Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3025

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3023 and EX28DRAFT_3024 overlap by 4 nucleotidesEX28DRAFT_3024 and EX28DRAFT_3025 overlap by 8 nucleotidesEX28DRAFT_3025 and EX28DRAFT_3026 are separated by 5 nucleotides EX28DRAFT_3023: EX28DRAFT_3023 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 334,399 to 335,376 _3023 EX28DRAFT_3024: EX28DRAFT_3024 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 335,373 to 336,350 _3024 EX28DRAFT_3025: EX28DRAFT_3025 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 336,343 to 337,188 _3025 EX28DRAFT_3026: EX28DRAFT_3026 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 337,194 to 338,147 _3026 Position (kb) 336 337 338Strain fitness (log2 ratio) -1 0 1at 335.437 kb on + strandat 335.602 kb on + strand, within EX28DRAFT_3024at 335.665 kb on + strand, within EX28DRAFT_3024at 335.666 kb on - strand, within EX28DRAFT_3024at 336.197 kb on + strand, within EX28DRAFT_3024at 336.336 kb on + strandat 336.336 kb on + strandat 336.339 kb on + strandat 336.339 kb on + strandat 336.339 kb on + strandat 336.339 kb on + strandat 336.340 kb on - strandat 336.340 kb on - strandat 336.470 kb on + strand, within EX28DRAFT_3025at 336.470 kb on + strand, within EX28DRAFT_3025at 336.470 kb on + strand, within EX28DRAFT_3025at 336.470 kb on + strand, within EX28DRAFT_3025at 336.471 kb on - strand, within EX28DRAFT_3025at 336.487 kb on - strand, within EX28DRAFT_3025at 336.677 kb on + strand, within EX28DRAFT_3025at 336.678 kb on - strand, within EX28DRAFT_3025at 336.678 kb on - strand, within EX28DRAFT_3025at 336.751 kb on - strand, within EX28DRAFT_3025at 336.785 kb on + strand, within EX28DRAFT_3025at 336.786 kb on - strand, within EX28DRAFT_3025at 336.966 kb on - strand, within EX28DRAFT_3025at 337.111 kb on - strandat 337.231 kb on + strandat 337.295 kb on + strand, within EX28DRAFT_3026at 337.378 kb on + strand, within EX28DRAFT_3026at 337.379 kb on - strand, within EX28DRAFT_3026at 337.379 kb on - strand, within EX28DRAFT_3026at 337.421 kb on + strand, within EX28DRAFT_3026at 337.547 kb on - strand, within EX28DRAFT_3026at 337.555 kb on + strand, within EX28DRAFT_3026at 337.587 kb on - strand, within EX28DRAFT_3026at 337.738 kb on + strand, within EX28DRAFT_3026at 337.738 kb on + strand, within EX28DRAFT_3026at 337.738 kb on + strand, within EX28DRAFT_3026at 337.739 kb on - strand, within EX28DRAFT_3026at 337.746 kb on + strand, within EX28DRAFT_3026at 337.746 kb on + strand, within EX28DRAFT_3026at 337.778 kb on + strand, within EX28DRAFT_3026at 337.778 kb on + strand, within EX28DRAFT_3026at 337.778 kb on + strand, within EX28DRAFT_3026at 337.779 kb on - strand, within EX28DRAFT_3026at 337.955 kb on - strand, within EX28DRAFT_3026at 338.030 kb on + strand, within EX28DRAFT_3026at 338.031 kb on - strand, within EX28DRAFT_3026at 338.035 kb on + strand, within EX28DRAFT_3026at 338.036 kb on - strand, within EX28DRAFT_3026at 338.093 kb on + strandat 338.094 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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335,437 + -0.5
335,602 + EX28DRAFT_3024 0.23 +0.2
335,665 + EX28DRAFT_3024 0.30 +0.3
335,666 - EX28DRAFT_3024 0.30 -0.0
336,197 + EX28DRAFT_3024 0.84 -0.0
336,336 + +0.7
336,336 + -0.1
336,339 + +0.0
336,339 + +0.6
336,339 + -0.0
336,339 + +0.2
336,340 - +1.2
336,340 - +0.0
336,470 + EX28DRAFT_3025 0.15 -0.9
336,470 + EX28DRAFT_3025 0.15 -0.3
336,470 + EX28DRAFT_3025 0.15 +0.0
336,470 + EX28DRAFT_3025 0.15 -0.1
336,471 - EX28DRAFT_3025 0.15 +0.1
336,487 - EX28DRAFT_3025 0.17 +0.2
336,677 + EX28DRAFT_3025 0.39 -0.8
336,678 - EX28DRAFT_3025 0.40 -0.1
336,678 - EX28DRAFT_3025 0.40 -0.3
336,751 - EX28DRAFT_3025 0.48 +0.1
336,785 + EX28DRAFT_3025 0.52 -0.0
336,786 - EX28DRAFT_3025 0.52 +0.0
336,966 - EX28DRAFT_3025 0.74 -0.8
337,111 - -0.3
337,231 + -0.1
337,295 + EX28DRAFT_3026 0.11 -0.2
337,378 + EX28DRAFT_3026 0.19 +1.0
337,379 - EX28DRAFT_3026 0.19 +0.7
337,379 - EX28DRAFT_3026 0.19 -0.1
337,421 + EX28DRAFT_3026 0.24 +0.1
337,547 - EX28DRAFT_3026 0.37 +0.0
337,555 + EX28DRAFT_3026 0.38 +0.3
337,587 - EX28DRAFT_3026 0.41 -0.1
337,738 + EX28DRAFT_3026 0.57 -0.1
337,738 + EX28DRAFT_3026 0.57 +0.3
337,738 + EX28DRAFT_3026 0.57 -0.3
337,739 - EX28DRAFT_3026 0.57 -0.1
337,746 + EX28DRAFT_3026 0.58 -0.4
337,746 + EX28DRAFT_3026 0.58 -0.1
337,778 + EX28DRAFT_3026 0.61 -0.4
337,778 + EX28DRAFT_3026 0.61 -0.0
337,778 + EX28DRAFT_3026 0.61 -0.2
337,779 - EX28DRAFT_3026 0.61 -0.2
337,955 - EX28DRAFT_3026 0.80 +0.3
338,030 + EX28DRAFT_3026 0.88 +0.0
338,031 - EX28DRAFT_3026 0.88 +0.1
338,035 + EX28DRAFT_3026 0.88 +0.4
338,036 - EX28DRAFT_3026 0.88 +0.9
338,093 + -0.0
338,094 - +0.1

Or see this region's nucleotide sequence