Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2922

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2921 and EX28DRAFT_2922 are separated by 63 nucleotidesEX28DRAFT_2922 and EX28DRAFT_2923 are separated by 235 nucleotides EX28DRAFT_2921: EX28DRAFT_2921 - 2-deoxy-D-gluconate 3-dehydrogenase, at 232,550 to 233,311 _2921 EX28DRAFT_2922: EX28DRAFT_2922 - 5-keto 4-deoxyuronate isomerase, at 233,375 to 234,211 _2922 EX28DRAFT_2923: EX28DRAFT_2923 - acetyl-CoA acetyltransferases, at 234,447 to 235,625 _2923 Position (kb) 233 234 235Strain fitness (log2 ratio) -1 0 1at 232.536 kb on + strandat 232.536 kb on + strandat 232.536 kb on + strandat 232.599 kb on + strandat 232.599 kb on + strandat 232.742 kb on - strand, within EX28DRAFT_2921at 232.742 kb on - strand, within EX28DRAFT_2921at 232.742 kb on - strand, within EX28DRAFT_2921at 232.744 kb on - strand, within EX28DRAFT_2921at 232.774 kb on + strand, within EX28DRAFT_2921at 232.774 kb on + strand, within EX28DRAFT_2921at 232.774 kb on + strand, within EX28DRAFT_2921at 232.774 kb on + strand, within EX28DRAFT_2921at 232.774 kb on + strand, within EX28DRAFT_2921at 232.775 kb on - strand, within EX28DRAFT_2921at 232.775 kb on - strand, within EX28DRAFT_2921at 232.775 kb on - strand, within EX28DRAFT_2921at 232.839 kb on + strand, within EX28DRAFT_2921at 232.839 kb on + strand, within EX28DRAFT_2921at 232.840 kb on - strand, within EX28DRAFT_2921at 232.885 kb on + strand, within EX28DRAFT_2921at 232.960 kb on + strand, within EX28DRAFT_2921at 232.961 kb on - strand, within EX28DRAFT_2921at 233.170 kb on + strand, within EX28DRAFT_2921at 233.191 kb on + strand, within EX28DRAFT_2921at 233.192 kb on - strand, within EX28DRAFT_2921at 233.322 kb on + strandat 233.323 kb on - strandat 233.323 kb on - strandat 233.356 kb on + strandat 233.357 kb on - strandat 233.446 kb on + strandat 233.447 kb on - strandat 233.447 kb on - strandat 233.833 kb on - strand, within EX28DRAFT_2922at 233.891 kb on - strand, within EX28DRAFT_2922at 233.926 kb on - strand, within EX28DRAFT_2922at 233.926 kb on - strand, within EX28DRAFT_2922at 234.062 kb on - strand, within EX28DRAFT_2922at 234.077 kb on - strand, within EX28DRAFT_2922at 234.108 kb on + strand, within EX28DRAFT_2922at 234.125 kb on + strand, within EX28DRAFT_2922at 234.163 kb on + strandat 234.286 kb on + strandat 234.287 kb on - strandat 234.287 kb on - strandat 234.287 kb on - strandat 234.287 kb on - strandat 234.287 kb on - strandat 234.298 kb on - strandat 234.488 kb on + strandat 234.488 kb on + strandat 234.488 kb on + strandat 234.667 kb on + strand, within EX28DRAFT_2923at 234.743 kb on - strand, within EX28DRAFT_2923at 234.780 kb on + strand, within EX28DRAFT_2923at 235.158 kb on - strand, within EX28DRAFT_2923at 235.162 kb on + strand, within EX28DRAFT_2923at 235.162 kb on + strand, within EX28DRAFT_2923at 235.163 kb on - strand, within EX28DRAFT_2923at 235.163 kb on - strand, within EX28DRAFT_2923at 235.163 kb on - strand, within EX28DRAFT_2923

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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232,536 + -0.1
232,536 + +1.4
232,536 + +0.7
232,599 + -0.3
232,599 + -0.0
232,742 - EX28DRAFT_2921 0.25 -0.2
232,742 - EX28DRAFT_2921 0.25 +0.4
232,742 - EX28DRAFT_2921 0.25 +0.1
232,744 - EX28DRAFT_2921 0.25 -0.1
232,774 + EX28DRAFT_2921 0.29 -0.7
232,774 + EX28DRAFT_2921 0.29 -0.1
232,774 + EX28DRAFT_2921 0.29 +0.2
232,774 + EX28DRAFT_2921 0.29 +0.1
232,774 + EX28DRAFT_2921 0.29 -0.1
232,775 - EX28DRAFT_2921 0.30 +0.1
232,775 - EX28DRAFT_2921 0.30 +0.2
232,775 - EX28DRAFT_2921 0.30 +0.0
232,839 + EX28DRAFT_2921 0.38 -0.4
232,839 + EX28DRAFT_2921 0.38 +0.3
232,840 - EX28DRAFT_2921 0.38 -0.3
232,885 + EX28DRAFT_2921 0.44 +0.1
232,960 + EX28DRAFT_2921 0.54 +0.5
232,961 - EX28DRAFT_2921 0.54 +0.0
233,170 + EX28DRAFT_2921 0.81 -0.2
233,191 + EX28DRAFT_2921 0.84 -0.1
233,192 - EX28DRAFT_2921 0.84 -0.3
233,322 + +0.2
233,323 - +0.5
233,323 - +0.4
233,356 + -0.7
233,357 - -0.8
233,446 + +0.2
233,447 - +0.2
233,447 - -0.1
233,833 - EX28DRAFT_2922 0.55 -0.2
233,891 - EX28DRAFT_2922 0.62 -0.5
233,926 - EX28DRAFT_2922 0.66 +0.2
233,926 - EX28DRAFT_2922 0.66 +0.1
234,062 - EX28DRAFT_2922 0.82 +0.4
234,077 - EX28DRAFT_2922 0.84 +0.1
234,108 + EX28DRAFT_2922 0.88 -0.8
234,125 + EX28DRAFT_2922 0.90 -0.2
234,163 + +0.3
234,286 + +0.5
234,287 - -0.2
234,287 - +0.2
234,287 - -0.0
234,287 - +0.2
234,287 - +1.2
234,298 - -1.0
234,488 + +0.8
234,488 + +0.0
234,488 + -0.1
234,667 + EX28DRAFT_2923 0.19 +0.1
234,743 - EX28DRAFT_2923 0.25 +0.8
234,780 + EX28DRAFT_2923 0.28 -0.1
235,158 - EX28DRAFT_2923 0.60 -0.2
235,162 + EX28DRAFT_2923 0.61 -0.2
235,162 + EX28DRAFT_2923 0.61 +0.7
235,163 - EX28DRAFT_2923 0.61 -0.3
235,163 - EX28DRAFT_2923 0.61 -0.5
235,163 - EX28DRAFT_2923 0.61 -0.2

Or see this region's nucleotide sequence