Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2734

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2733 and EX28DRAFT_2734 overlap by 20 nucleotidesEX28DRAFT_2734 and EX28DRAFT_2735 are separated by 187 nucleotidesEX28DRAFT_2735 and EX28DRAFT_2736 are separated by 17 nucleotidesEX28DRAFT_2736 and EX28DRAFT_2737 are separated by 88 nucleotides EX28DRAFT_2733: EX28DRAFT_2733 - type I secretion system ATPase, LssB family, at 44,292 to 46,490 _2733 EX28DRAFT_2734: EX28DRAFT_2734 - Multidrug resistance efflux pump, at 46,471 to 47,670 _2734 EX28DRAFT_2735: EX28DRAFT_2735 - RNA, at 47,858 to 47,945 _2735 EX28DRAFT_2736: EX28DRAFT_2736 - hypothetical protein, at 47,963 to 48,341 _2736 EX28DRAFT_2737: EX28DRAFT_2737 - addiction module antidote protein, HigA family, at 48,430 to 48,699 _2737 Position (kb) 46 47 48Strain fitness (log2 ratio) -1 0 1 2at 45.496 kb on - strand, within EX28DRAFT_2733at 45.738 kb on + strand, within EX28DRAFT_2733at 45.738 kb on + strand, within EX28DRAFT_2733at 45.738 kb on + strand, within EX28DRAFT_2733at 46.676 kb on + strand, within EX28DRAFT_2734at 46.676 kb on + strand, within EX28DRAFT_2734at 46.979 kb on + strand, within EX28DRAFT_2734at 46.980 kb on - strand, within EX28DRAFT_2734at 46.980 kb on - strand, within EX28DRAFT_2734at 47.102 kb on + strand, within EX28DRAFT_2734at 47.102 kb on + strand, within EX28DRAFT_2734at 47.103 kb on - strand, within EX28DRAFT_2734at 47.117 kb on - strand, within EX28DRAFT_2734at 47.117 kb on - strand, within EX28DRAFT_2734at 47.163 kb on + strand, within EX28DRAFT_2734at 47.465 kb on + strand, within EX28DRAFT_2734at 47.494 kb on + strand, within EX28DRAFT_2734at 47.494 kb on + strand, within EX28DRAFT_2734at 47.494 kb on + strand, within EX28DRAFT_2734at 47.495 kb on - strand, within EX28DRAFT_2734at 47.528 kb on - strand, within EX28DRAFT_2734at 47.528 kb on - strand, within EX28DRAFT_2734at 47.538 kb on + strand, within EX28DRAFT_2734at 47.592 kb on + strandat 47.593 kb on - strandat 47.681 kb on + strandat 47.681 kb on + strandat 47.682 kb on - strandat 47.682 kb on - strandat 47.682 kb on - strandat 47.682 kb on - strandat 47.682 kb on - strandat 47.682 kb on - strandat 47.743 kb on - strandat 47.758 kb on + strandat 47.759 kb on - strandat 48.289 kb on + strand, within EX28DRAFT_2736at 48.289 kb on + strand, within EX28DRAFT_2736at 48.569 kb on + strand, within EX28DRAFT_2737at 48.577 kb on - strand, within EX28DRAFT_2737

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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45,496 - EX28DRAFT_2733 0.55 +0.3
45,738 + EX28DRAFT_2733 0.66 +0.2
45,738 + EX28DRAFT_2733 0.66 -0.5
45,738 + EX28DRAFT_2733 0.66 +0.6
46,676 + EX28DRAFT_2734 0.17 +0.2
46,676 + EX28DRAFT_2734 0.17 +0.9
46,979 + EX28DRAFT_2734 0.42 +0.4
46,980 - EX28DRAFT_2734 0.42 +0.3
46,980 - EX28DRAFT_2734 0.42 +0.5
47,102 + EX28DRAFT_2734 0.53 +0.2
47,102 + EX28DRAFT_2734 0.53 +0.0
47,103 - EX28DRAFT_2734 0.53 -0.1
47,117 - EX28DRAFT_2734 0.54 -0.8
47,117 - EX28DRAFT_2734 0.54 -0.0
47,163 + EX28DRAFT_2734 0.58 +0.5
47,465 + EX28DRAFT_2734 0.83 +1.8
47,494 + EX28DRAFT_2734 0.85 -0.3
47,494 + EX28DRAFT_2734 0.85 +0.2
47,494 + EX28DRAFT_2734 0.85 -0.4
47,495 - EX28DRAFT_2734 0.85 +0.1
47,528 - EX28DRAFT_2734 0.88 -0.0
47,528 - EX28DRAFT_2734 0.88 +0.3
47,538 + EX28DRAFT_2734 0.89 +0.2
47,592 + -0.3
47,593 - -0.2
47,681 + -0.2
47,681 + +0.2
47,682 - +0.1
47,682 - -0.8
47,682 - -0.2
47,682 - +0.1
47,682 - +0.1
47,682 - +0.5
47,743 - +0.1
47,758 + -0.1
47,759 - -0.2
48,289 + EX28DRAFT_2736 0.86 -0.3
48,289 + EX28DRAFT_2736 0.86 -0.3
48,569 + EX28DRAFT_2737 0.51 -0.3
48,577 - EX28DRAFT_2737 0.54 -0.4

Or see this region's nucleotide sequence