Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2622

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2621 and EX28DRAFT_2622 are separated by 576 nucleotidesEX28DRAFT_2622 and EX28DRAFT_2623 are separated by 259 nucleotides EX28DRAFT_2621: EX28DRAFT_2621 - hypothetical protein, at 2,660,141 to 2,660,500 _2621 EX28DRAFT_2622: EX28DRAFT_2622 - hypothetical protein, at 2,661,077 to 2,661,432 _2622 EX28DRAFT_2623: EX28DRAFT_2623 - Enolase, at 2,661,692 to 2,662,963 _2623 Position (kb) 2661 2662Strain fitness (log2 ratio) -2 -1 0 1at 2660.079 kb on - strandat 2660.129 kb on + strandat 2660.138 kb on + strandat 2660.139 kb on - strandat 2660.139 kb on - strandat 2660.223 kb on + strand, within EX28DRAFT_2621at 2660.223 kb on + strand, within EX28DRAFT_2621at 2660.353 kb on - strand, within EX28DRAFT_2621at 2660.449 kb on - strand, within EX28DRAFT_2621at 2660.515 kb on + strandat 2660.516 kb on - strandat 2660.592 kb on + strandat 2660.690 kb on + strandat 2660.691 kb on - strandat 2660.725 kb on + strandat 2660.725 kb on + strandat 2660.725 kb on + strandat 2660.726 kb on - strandat 2660.791 kb on + strandat 2660.872 kb on + strandat 2660.872 kb on + strandat 2660.928 kb on + strandat 2660.935 kb on + strandat 2660.935 kb on + strandat 2660.935 kb on + strandat 2660.988 kb on + strandat 2660.988 kb on + strandat 2660.999 kb on + strandat 2660.999 kb on + strandat 2661.000 kb on - strandat 2661.051 kb on - strandat 2661.051 kb on - strandat 2661.172 kb on + strand, within EX28DRAFT_2622at 2661.231 kb on + strand, within EX28DRAFT_2622at 2661.251 kb on + strand, within EX28DRAFT_2622at 2661.251 kb on + strand, within EX28DRAFT_2622at 2661.290 kb on + strand, within EX28DRAFT_2622at 2661.294 kb on - strand, within EX28DRAFT_2622at 2661.328 kb on + strand, within EX28DRAFT_2622at 2661.328 kb on + strand, within EX28DRAFT_2622at 2661.329 kb on - strand, within EX28DRAFT_2622at 2661.455 kb on + strandat 2661.498 kb on + strandat 2661.498 kb on + strandat 2661.568 kb on + strandat 2661.569 kb on - strandat 2661.590 kb on + strandat 2661.591 kb on - strandat 2661.591 kb on - strandat 2661.591 kb on - strandat 2661.593 kb on + strandat 2661.594 kb on - strandat 2661.594 kb on - strandat 2661.631 kb on + strandat 2661.631 kb on + strandat 2661.631 kb on + strandat 2661.631 kb on + strandat 2661.632 kb on - strandat 2661.632 kb on - strandat 2661.632 kb on - strandat 2661.635 kb on + strandat 2661.635 kb on + strandat 2661.635 kb on + strandat 2661.635 kb on + strandat 2661.636 kb on - strandat 2661.636 kb on - strandat 2661.684 kb on + strandat 2661.685 kb on - strandat 2661.719 kb on + strandat 2661.719 kb on + strandat 2661.720 kb on - strandat 2661.978 kb on - strand, within EX28DRAFT_2623at 2661.978 kb on - strand, within EX28DRAFT_2623at 2662.072 kb on + strand, within EX28DRAFT_2623at 2662.072 kb on + strand, within EX28DRAFT_2623at 2662.072 kb on + strand, within EX28DRAFT_2623at 2662.161 kb on + strand, within EX28DRAFT_2623at 2662.161 kb on + strand, within EX28DRAFT_2623at 2662.162 kb on - strand, within EX28DRAFT_2623at 2662.162 kb on - strand, within EX28DRAFT_2623at 2662.162 kb on - strand, within EX28DRAFT_2623at 2662.259 kb on - strand, within EX28DRAFT_2623at 2662.259 kb on - strand, within EX28DRAFT_2623at 2662.264 kb on + strand, within EX28DRAFT_2623at 2662.301 kb on + strand, within EX28DRAFT_2623

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,660,079 - -0.0
2,660,129 + +0.7
2,660,138 + -0.2
2,660,139 - -0.8
2,660,139 - +0.3
2,660,223 + EX28DRAFT_2621 0.23 -0.2
2,660,223 + EX28DRAFT_2621 0.23 -0.1
2,660,353 - EX28DRAFT_2621 0.59 +0.2
2,660,449 - EX28DRAFT_2621 0.86 +0.1
2,660,515 + +0.1
2,660,516 - -2.3
2,660,592 + +0.5
2,660,690 + +0.6
2,660,691 - -0.6
2,660,725 + +0.1
2,660,725 + +0.1
2,660,725 + -0.8
2,660,726 - -0.4
2,660,791 + -0.3
2,660,872 + +0.3
2,660,872 + +0.1
2,660,928 + -0.0
2,660,935 + -0.4
2,660,935 + +0.0
2,660,935 + +0.3
2,660,988 + +0.0
2,660,988 + -0.1
2,660,999 + +0.2
2,660,999 + -0.6
2,661,000 - -0.4
2,661,051 - -0.9
2,661,051 - -0.3
2,661,172 + EX28DRAFT_2622 0.27 -0.2
2,661,231 + EX28DRAFT_2622 0.43 -0.1
2,661,251 + EX28DRAFT_2622 0.49 +0.0
2,661,251 + EX28DRAFT_2622 0.49 +0.0
2,661,290 + EX28DRAFT_2622 0.60 +0.3
2,661,294 - EX28DRAFT_2622 0.61 -0.8
2,661,328 + EX28DRAFT_2622 0.71 -0.0
2,661,328 + EX28DRAFT_2622 0.71 -1.0
2,661,329 - EX28DRAFT_2622 0.71 -0.2
2,661,455 + +0.1
2,661,498 + -0.1
2,661,498 + +0.1
2,661,568 + -0.9
2,661,569 - +0.4
2,661,590 + +0.1
2,661,591 - -0.3
2,661,591 - -0.1
2,661,591 - -0.5
2,661,593 + -1.2
2,661,594 - -0.1
2,661,594 - -0.2
2,661,631 + +0.3
2,661,631 + -0.1
2,661,631 + -0.6
2,661,631 + -0.8
2,661,632 - -0.5
2,661,632 - +0.0
2,661,632 - -0.6
2,661,635 + -0.3
2,661,635 + -0.1
2,661,635 + -0.1
2,661,635 + -0.1
2,661,636 - +0.3
2,661,636 - +0.2
2,661,684 + +0.2
2,661,685 - +0.7
2,661,719 + +0.1
2,661,719 + -1.4
2,661,720 - -0.3
2,661,978 - EX28DRAFT_2623 0.22 +0.0
2,661,978 - EX28DRAFT_2623 0.22 -0.2
2,662,072 + EX28DRAFT_2623 0.30 +0.2
2,662,072 + EX28DRAFT_2623 0.30 +0.2
2,662,072 + EX28DRAFT_2623 0.30 -0.7
2,662,161 + EX28DRAFT_2623 0.37 -0.2
2,662,161 + EX28DRAFT_2623 0.37 +0.2
2,662,162 - EX28DRAFT_2623 0.37 +0.7
2,662,162 - EX28DRAFT_2623 0.37 -1.9
2,662,162 - EX28DRAFT_2623 0.37 -0.2
2,662,259 - EX28DRAFT_2623 0.45 -0.5
2,662,259 - EX28DRAFT_2623 0.45 -0.7
2,662,264 + EX28DRAFT_2623 0.45 -0.0
2,662,301 + EX28DRAFT_2623 0.48 -0.1

Or see this region's nucleotide sequence