Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2525

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2523 and EX28DRAFT_2524 are separated by 41 nucleotidesEX28DRAFT_2524 and EX28DRAFT_2525 are separated by 101 nucleotidesEX28DRAFT_2525 and EX28DRAFT_2526 are separated by 66 nucleotidesEX28DRAFT_2526 and EX28DRAFT_2527 are separated by 60 nucleotides EX28DRAFT_2523: EX28DRAFT_2523 - Cysteine synthase, at 2,553,852 to 2,554,901 _2523 EX28DRAFT_2524: EX28DRAFT_2524 - HAD-superfamily hydrolase, subfamily IIB, at 2,554,943 to 2,555,761 _2524 EX28DRAFT_2525: EX28DRAFT_2525 - ABC-type uncharacterized transport system, periplasmic component, at 2,555,863 to 2,557,563 _2525 EX28DRAFT_2526: EX28DRAFT_2526 - queuosine biosynthesis protein QueC, at 2,557,630 to 2,558,325 _2526 EX28DRAFT_2527: EX28DRAFT_2527 - acyl-CoA thioester hydrolase, YbgC/YbaW family, at 2,558,386 to 2,558,784 _2527 Position (kb) 2555 2556 2557 2558Strain fitness (log2 ratio) -2 -1 0 1 2at 2554.900 kb on - strandat 2554.916 kb on + strandat 2554.916 kb on + strandat 2554.917 kb on - strandat 2554.917 kb on - strandat 2555.093 kb on + strand, within EX28DRAFT_2524at 2555.093 kb on + strand, within EX28DRAFT_2524at 2555.094 kb on - strand, within EX28DRAFT_2524at 2555.140 kb on + strand, within EX28DRAFT_2524at 2555.140 kb on + strand, within EX28DRAFT_2524at 2555.140 kb on + strand, within EX28DRAFT_2524at 2555.201 kb on - strand, within EX28DRAFT_2524at 2555.329 kb on + strand, within EX28DRAFT_2524at 2555.329 kb on + strand, within EX28DRAFT_2524at 2555.330 kb on - strand, within EX28DRAFT_2524at 2555.330 kb on - strand, within EX28DRAFT_2524at 2555.330 kb on - strand, within EX28DRAFT_2524at 2555.366 kb on - strand, within EX28DRAFT_2524at 2555.373 kb on + strand, within EX28DRAFT_2524at 2555.406 kb on - strand, within EX28DRAFT_2524at 2555.406 kb on - strand, within EX28DRAFT_2524at 2555.544 kb on - strand, within EX28DRAFT_2524at 2555.766 kb on - strandat 2555.787 kb on + strandat 2556.063 kb on - strand, within EX28DRAFT_2525at 2556.182 kb on + strand, within EX28DRAFT_2525at 2556.616 kb on + strand, within EX28DRAFT_2525at 2556.616 kb on + strand, within EX28DRAFT_2525at 2556.617 kb on - strand, within EX28DRAFT_2525at 2556.893 kb on - strand, within EX28DRAFT_2525at 2556.945 kb on + strand, within EX28DRAFT_2525at 2556.951 kb on + strand, within EX28DRAFT_2525at 2557.059 kb on - strand, within EX28DRAFT_2525at 2557.067 kb on + strand, within EX28DRAFT_2525at 2557.067 kb on + strand, within EX28DRAFT_2525at 2557.067 kb on + strand, within EX28DRAFT_2525at 2557.068 kb on - strand, within EX28DRAFT_2525at 2557.096 kb on + strand, within EX28DRAFT_2525at 2557.144 kb on + strand, within EX28DRAFT_2525at 2557.144 kb on + strand, within EX28DRAFT_2525at 2557.144 kb on + strand, within EX28DRAFT_2525at 2557.144 kb on + strand, within EX28DRAFT_2525at 2557.250 kb on + strand, within EX28DRAFT_2525at 2557.250 kb on + strand, within EX28DRAFT_2525at 2557.272 kb on + strand, within EX28DRAFT_2525at 2557.272 kb on + strand, within EX28DRAFT_2525at 2557.273 kb on - strand, within EX28DRAFT_2525at 2557.389 kb on + strand, within EX28DRAFT_2525at 2557.460 kb on - strandat 2557.460 kb on - strandat 2557.497 kb on + strandat 2557.497 kb on + strandat 2557.497 kb on + strandat 2557.498 kb on - strandat 2557.498 kb on - strandat 2557.499 kb on + strandat 2557.598 kb on + strandat 2557.613 kb on - strandat 2557.674 kb on + strandat 2557.675 kb on - strandat 2557.703 kb on - strand, within EX28DRAFT_2526at 2557.827 kb on - strand, within EX28DRAFT_2526at 2557.863 kb on + strand, within EX28DRAFT_2526at 2557.863 kb on + strand, within EX28DRAFT_2526at 2557.864 kb on - strand, within EX28DRAFT_2526at 2557.864 kb on - strand, within EX28DRAFT_2526at 2557.879 kb on + strand, within EX28DRAFT_2526at 2557.879 kb on + strand, within EX28DRAFT_2526at 2557.880 kb on - strand, within EX28DRAFT_2526at 2557.880 kb on - strand, within EX28DRAFT_2526at 2557.929 kb on + strand, within EX28DRAFT_2526at 2557.957 kb on + strand, within EX28DRAFT_2526at 2557.958 kb on - strand, within EX28DRAFT_2526at 2557.958 kb on - strand, within EX28DRAFT_2526at 2557.958 kb on - strand, within EX28DRAFT_2526at 2557.958 kb on - strand, within EX28DRAFT_2526at 2557.971 kb on - strand, within EX28DRAFT_2526at 2558.194 kb on + strand, within EX28DRAFT_2526at 2558.319 kb on + strandat 2558.320 kb on - strandat 2558.323 kb on + strandat 2558.329 kb on + strandat 2558.527 kb on + strand, within EX28DRAFT_2527at 2558.528 kb on - strand, within EX28DRAFT_2527

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,554,900 - -0.2
2,554,916 + +0.0
2,554,916 + -0.2
2,554,917 - +0.2
2,554,917 - -0.0
2,555,093 + EX28DRAFT_2524 0.18 -0.5
2,555,093 + EX28DRAFT_2524 0.18 +1.4
2,555,094 - EX28DRAFT_2524 0.18 -0.6
2,555,140 + EX28DRAFT_2524 0.24 +0.2
2,555,140 + EX28DRAFT_2524 0.24 -0.2
2,555,140 + EX28DRAFT_2524 0.24 -0.2
2,555,201 - EX28DRAFT_2524 0.32 -0.5
2,555,329 + EX28DRAFT_2524 0.47 +0.2
2,555,329 + EX28DRAFT_2524 0.47 +0.2
2,555,330 - EX28DRAFT_2524 0.47 -0.6
2,555,330 - EX28DRAFT_2524 0.47 +1.1
2,555,330 - EX28DRAFT_2524 0.47 +0.7
2,555,366 - EX28DRAFT_2524 0.52 +0.8
2,555,373 + EX28DRAFT_2524 0.53 -0.2
2,555,406 - EX28DRAFT_2524 0.57 -0.3
2,555,406 - EX28DRAFT_2524 0.57 -0.7
2,555,544 - EX28DRAFT_2524 0.73 +0.5
2,555,766 - -1.1
2,555,787 + +0.9
2,556,063 - EX28DRAFT_2525 0.12 -0.3
2,556,182 + EX28DRAFT_2525 0.19 +0.1
2,556,616 + EX28DRAFT_2525 0.44 +0.1
2,556,616 + EX28DRAFT_2525 0.44 +0.4
2,556,617 - EX28DRAFT_2525 0.44 -0.1
2,556,893 - EX28DRAFT_2525 0.61 -0.8
2,556,945 + EX28DRAFT_2525 0.64 -0.3
2,556,951 + EX28DRAFT_2525 0.64 -0.4
2,557,059 - EX28DRAFT_2525 0.70 -0.3
2,557,067 + EX28DRAFT_2525 0.71 +0.1
2,557,067 + EX28DRAFT_2525 0.71 +0.2
2,557,067 + EX28DRAFT_2525 0.71 -0.7
2,557,068 - EX28DRAFT_2525 0.71 -0.4
2,557,096 + EX28DRAFT_2525 0.72 -0.1
2,557,144 + EX28DRAFT_2525 0.75 -0.5
2,557,144 + EX28DRAFT_2525 0.75 -0.8
2,557,144 + EX28DRAFT_2525 0.75 +1.4
2,557,144 + EX28DRAFT_2525 0.75 -0.2
2,557,250 + EX28DRAFT_2525 0.82 -0.2
2,557,250 + EX28DRAFT_2525 0.82 -0.1
2,557,272 + EX28DRAFT_2525 0.83 -0.9
2,557,272 + EX28DRAFT_2525 0.83 -0.2
2,557,273 - EX28DRAFT_2525 0.83 +0.0
2,557,389 + EX28DRAFT_2525 0.90 -0.5
2,557,460 - -0.1
2,557,460 - +0.9
2,557,497 + +0.2
2,557,497 + +1.9
2,557,497 + -0.0
2,557,498 - +1.1
2,557,498 - -0.4
2,557,499 + +0.1
2,557,598 + -0.6
2,557,613 - +0.0
2,557,674 + +0.1
2,557,675 - -0.6
2,557,703 - EX28DRAFT_2526 0.10 +0.5
2,557,827 - EX28DRAFT_2526 0.28 +0.1
2,557,863 + EX28DRAFT_2526 0.33 +0.8
2,557,863 + EX28DRAFT_2526 0.33 +0.5
2,557,864 - EX28DRAFT_2526 0.34 +0.0
2,557,864 - EX28DRAFT_2526 0.34 +0.3
2,557,879 + EX28DRAFT_2526 0.36 -1.0
2,557,879 + EX28DRAFT_2526 0.36 +0.7
2,557,880 - EX28DRAFT_2526 0.36 -0.0
2,557,880 - EX28DRAFT_2526 0.36 -2.0
2,557,929 + EX28DRAFT_2526 0.43 +0.1
2,557,957 + EX28DRAFT_2526 0.47 +0.0
2,557,958 - EX28DRAFT_2526 0.47 +0.9
2,557,958 - EX28DRAFT_2526 0.47 +0.4
2,557,958 - EX28DRAFT_2526 0.47 -0.0
2,557,958 - EX28DRAFT_2526 0.47 +1.1
2,557,971 - EX28DRAFT_2526 0.49 +0.0
2,558,194 + EX28DRAFT_2526 0.81 +0.2
2,558,319 + +0.1
2,558,320 - +0.5
2,558,323 + -0.5
2,558,329 + -0.2
2,558,527 + EX28DRAFT_2527 0.35 -0.8
2,558,528 - EX28DRAFT_2527 0.36 -0.3

Or see this region's nucleotide sequence