Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2518 and EX28DRAFT_2519 are separated by 35 nucleotides EX28DRAFT_2519 and EX28DRAFT_2520 are separated by 221 nucleotides EX28DRAFT_2520 and EX28DRAFT_2521 overlap by 8 nucleotides
EX28DRAFT_2518: EX28DRAFT_2518 - ammonium transporter, at 2,547,819 to 2,549,108
_2518
EX28DRAFT_2519: EX28DRAFT_2519 - nitrogen regulatory protein P-II family, at 2,549,144 to 2,549,482
_2519
EX28DRAFT_2520: EX28DRAFT_2520 - ABC-type multidrug transport system, ATPase and permease components, at 2,549,704 to 2,551,485
_2520
EX28DRAFT_2521: EX28DRAFT_2521 - ABC-type multidrug transport system, ATPase and permease components, at 2,551,478 to 2,553,250
_2521
Position (kb)
2549
2550
2551
2552 Strain fitness (log2 ratio)
-2
-1
0
1 at 2548.712 kb on + strand, within EX28DRAFT_2518 at 2548.747 kb on + strand, within EX28DRAFT_2518 at 2548.753 kb on + strand, within EX28DRAFT_2518 at 2549.101 kb on - strand at 2549.101 kb on - strand at 2549.323 kb on + strand, within EX28DRAFT_2519 at 2549.324 kb on - strand, within EX28DRAFT_2519 at 2549.462 kb on + strand at 2549.462 kb on + strand at 2549.463 kb on - strand at 2549.482 kb on + strand at 2549.483 kb on - strand at 2549.483 kb on - strand at 2549.533 kb on - strand at 2549.771 kb on + strand at 2550.084 kb on + strand, within EX28DRAFT_2520 at 2550.085 kb on - strand, within EX28DRAFT_2520 at 2550.349 kb on - strand, within EX28DRAFT_2520 at 2550.550 kb on + strand, within EX28DRAFT_2520 at 2550.550 kb on + strand, within EX28DRAFT_2520 at 2550.621 kb on + strand, within EX28DRAFT_2520 at 2550.621 kb on + strand, within EX28DRAFT_2520 at 2550.621 kb on + strand, within EX28DRAFT_2520 at 2550.621 kb on + strand, within EX28DRAFT_2520 at 2550.621 kb on + strand, within EX28DRAFT_2520 at 2550.622 kb on - strand, within EX28DRAFT_2520 at 2550.622 kb on - strand, within EX28DRAFT_2520 at 2550.622 kb on - strand, within EX28DRAFT_2520 at 2550.622 kb on - strand, within EX28DRAFT_2520 at 2550.622 kb on - strand, within EX28DRAFT_2520 at 2550.624 kb on + strand, within EX28DRAFT_2520 at 2550.625 kb on - strand, within EX28DRAFT_2520 at 2550.625 kb on - strand, within EX28DRAFT_2520 at 2550.654 kb on + strand, within EX28DRAFT_2520 at 2550.763 kb on - strand, within EX28DRAFT_2520 at 2550.773 kb on + strand, within EX28DRAFT_2520 at 2550.773 kb on + strand, within EX28DRAFT_2520 at 2550.774 kb on - strand, within EX28DRAFT_2520 at 2550.890 kb on + strand, within EX28DRAFT_2520 at 2550.891 kb on - strand, within EX28DRAFT_2520 at 2550.891 kb on - strand, within EX28DRAFT_2520 at 2550.932 kb on + strand, within EX28DRAFT_2520 at 2550.932 kb on + strand, within EX28DRAFT_2520 at 2551.238 kb on + strand, within EX28DRAFT_2520 at 2551.238 kb on + strand, within EX28DRAFT_2520 at 2551.239 kb on - strand, within EX28DRAFT_2520 at 2551.264 kb on + strand, within EX28DRAFT_2520 at 2551.275 kb on - strand, within EX28DRAFT_2520 at 2551.420 kb on - strand at 2551.420 kb on - strand at 2551.480 kb on - strand at 2551.548 kb on + strand at 2551.622 kb on + strand at 2551.888 kb on + strand, within EX28DRAFT_2521 at 2551.899 kb on - strand, within EX28DRAFT_2521 at 2551.899 kb on - strand, within EX28DRAFT_2521 at 2552.180 kb on - strand, within EX28DRAFT_2521 at 2552.403 kb on + strand, within EX28DRAFT_2521 at 2552.403 kb on + strand, within EX28DRAFT_2521 at 2552.434 kb on + strand, within EX28DRAFT_2521 at 2552.435 kb on - strand, within EX28DRAFT_2521 at 2552.482 kb on + strand, within EX28DRAFT_2521 at 2552.482 kb on + strand, within EX28DRAFT_2521 at 2552.483 kb on - strand, within EX28DRAFT_2521 at 2552.483 kb on - strand, within EX28DRAFT_2521 at 2552.483 kb on - strand, within EX28DRAFT_2521 at 2552.483 kb on - strand, within EX28DRAFT_2521
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,548,712 + EX28DRAFT_2518 0.69 -0.3 2,548,747 + EX28DRAFT_2518 0.72 -0.5 2,548,753 + EX28DRAFT_2518 0.72 -0.6 2,549,101 - -0.4 2,549,101 - -0.3 2,549,323 + EX28DRAFT_2519 0.53 +0.1 2,549,324 - EX28DRAFT_2519 0.53 +0.8 2,549,462 + -0.2 2,549,462 + -0.7 2,549,463 - +0.4 2,549,482 + -1.7 2,549,483 - +0.3 2,549,483 - -0.5 2,549,533 - -0.8 2,549,771 + +0.2 2,550,084 + EX28DRAFT_2520 0.21 +0.0 2,550,085 - EX28DRAFT_2520 0.21 -2.1 2,550,349 - EX28DRAFT_2520 0.36 -1.0 2,550,550 + EX28DRAFT_2520 0.47 -0.1 2,550,550 + EX28DRAFT_2520 0.47 +0.3 2,550,621 + EX28DRAFT_2520 0.51 -0.0 2,550,621 + EX28DRAFT_2520 0.51 +0.2 2,550,621 + EX28DRAFT_2520 0.51 -1.1 2,550,621 + EX28DRAFT_2520 0.51 -0.4 2,550,621 + EX28DRAFT_2520 0.51 -0.0 2,550,622 - EX28DRAFT_2520 0.52 -1.2 2,550,622 - EX28DRAFT_2520 0.52 -2.3 2,550,622 - EX28DRAFT_2520 0.52 +0.1 2,550,622 - EX28DRAFT_2520 0.52 +0.5 2,550,622 - EX28DRAFT_2520 0.52 +0.0 2,550,624 + EX28DRAFT_2520 0.52 -0.0 2,550,625 - EX28DRAFT_2520 0.52 +0.1 2,550,625 - EX28DRAFT_2520 0.52 -1.7 2,550,654 + EX28DRAFT_2520 0.53 +1.0 2,550,763 - EX28DRAFT_2520 0.59 -0.6 2,550,773 + EX28DRAFT_2520 0.60 +0.2 2,550,773 + EX28DRAFT_2520 0.60 -1.0 2,550,774 - EX28DRAFT_2520 0.60 +0.3 2,550,890 + EX28DRAFT_2520 0.67 -0.4 2,550,891 - EX28DRAFT_2520 0.67 -0.4 2,550,891 - EX28DRAFT_2520 0.67 -1.7 2,550,932 + EX28DRAFT_2520 0.69 -0.8 2,550,932 + EX28DRAFT_2520 0.69 +0.7 2,551,238 + EX28DRAFT_2520 0.86 -0.6 2,551,238 + EX28DRAFT_2520 0.86 -0.6 2,551,239 - EX28DRAFT_2520 0.86 -0.3 2,551,264 + EX28DRAFT_2520 0.88 -0.4 2,551,275 - EX28DRAFT_2520 0.88 -0.3 2,551,420 - -1.7 2,551,420 - +0.0 2,551,480 - +0.1 2,551,548 + +0.3 2,551,622 + +0.6 2,551,888 + EX28DRAFT_2521 0.23 -0.1 2,551,899 - EX28DRAFT_2521 0.24 -0.4 2,551,899 - EX28DRAFT_2521 0.24 -0.0 2,552,180 - EX28DRAFT_2521 0.40 -0.5 2,552,403 + EX28DRAFT_2521 0.52 -0.2 2,552,403 + EX28DRAFT_2521 0.52 +0.1 2,552,434 + EX28DRAFT_2521 0.54 +0.0 2,552,435 - EX28DRAFT_2521 0.54 +0.1 2,552,482 + EX28DRAFT_2521 0.57 -0.5 2,552,482 + EX28DRAFT_2521 0.57 +1.5 2,552,483 - EX28DRAFT_2521 0.57 -0.4 2,552,483 - EX28DRAFT_2521 0.57 -0.1 2,552,483 - EX28DRAFT_2521 0.57 -0.0 2,552,483 - EX28DRAFT_2521 0.57 +1.3
Or see this region's nucleotide sequence