Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2289

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2287 and EX28DRAFT_2288 are separated by 24 nucleotidesEX28DRAFT_2288 and EX28DRAFT_2289 are separated by 183 nucleotidesEX28DRAFT_2289 and EX28DRAFT_2290 are separated by 128 nucleotidesEX28DRAFT_2290 and EX28DRAFT_2291 are separated by 155 nucleotides EX28DRAFT_2287: EX28DRAFT_2287 - phosphoglucomutase, alpha-D-glucose phosphate-specific, at 2,315,264 to 2,316,904 _2287 EX28DRAFT_2288: EX28DRAFT_2288 - negative regulator of replication initiation SeqA, at 2,316,929 to 2,317,477 _2288 EX28DRAFT_2289: EX28DRAFT_2289 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 2,317,661 to 2,318,434 _2289 EX28DRAFT_2290: EX28DRAFT_2290 - Ribbon-helix-helix protein, copG family, at 2,318,563 to 2,318,850 _2290 EX28DRAFT_2291: EX28DRAFT_2291 - flavodoxin, long chain, at 2,319,006 to 2,319,536 _2291 Position (kb) 2317 2318 2319Strain fitness (log2 ratio) -2 -1 0 1at 2316.661 kb on - strand, within EX28DRAFT_2287at 2316.775 kb on + strandat 2316.776 kb on - strandat 2316.825 kb on + strandat 2316.825 kb on + strandat 2316.826 kb on - strandat 2316.826 kb on - strandat 2316.931 kb on - strandat 2317.180 kb on - strand, within EX28DRAFT_2288at 2317.438 kb on + strandat 2317.439 kb on - strandat 2317.439 kb on - strandat 2317.498 kb on + strandat 2317.523 kb on - strandat 2317.523 kb on - strandat 2317.524 kb on + strandat 2317.524 kb on + strandat 2317.524 kb on + strandat 2317.524 kb on + strandat 2317.525 kb on - strandat 2317.582 kb on - strandat 2317.639 kb on + strandat 2317.639 kb on + strandat 2317.639 kb on + strandat 2317.639 kb on + strandat 2317.639 kb on + strandat 2317.639 kb on + strandat 2317.640 kb on - strandat 2317.643 kb on + strandat 2317.643 kb on + strandat 2317.644 kb on - strandat 2317.705 kb on + strandat 2317.793 kb on - strand, within EX28DRAFT_2289at 2317.797 kb on + strand, within EX28DRAFT_2289at 2317.976 kb on - strand, within EX28DRAFT_2289at 2318.015 kb on + strand, within EX28DRAFT_2289at 2318.119 kb on + strand, within EX28DRAFT_2289at 2318.204 kb on + strand, within EX28DRAFT_2289at 2318.204 kb on + strand, within EX28DRAFT_2289at 2318.204 kb on + strand, within EX28DRAFT_2289at 2318.204 kb on + strand, within EX28DRAFT_2289at 2318.498 kb on + strandat 2318.498 kb on + strandat 2318.499 kb on - strandat 2318.499 kb on - strandat 2318.499 kb on - strandat 2318.587 kb on - strandat 2318.848 kb on + strandat 2318.848 kb on + strandat 2318.848 kb on + strandat 2318.848 kb on + strandat 2318.848 kb on + strandat 2318.849 kb on - strandat 2318.883 kb on + strandat 2318.908 kb on + strandat 2318.908 kb on + strandat 2318.909 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,316,661 - EX28DRAFT_2287 0.85 +0.0
2,316,775 + -1.5
2,316,776 - -1.9
2,316,825 + +0.8
2,316,825 + -0.5
2,316,826 - -1.3
2,316,826 - +0.6
2,316,931 - +0.3
2,317,180 - EX28DRAFT_2288 0.46 +0.1
2,317,438 + -0.3
2,317,439 - +0.3
2,317,439 - -0.0
2,317,498 + -0.2
2,317,523 - -0.0
2,317,523 - +0.2
2,317,524 + +0.5
2,317,524 + +0.4
2,317,524 + +0.1
2,317,524 + -0.6
2,317,525 - +0.8
2,317,582 - +0.2
2,317,639 + -0.1
2,317,639 + +0.1
2,317,639 + +0.7
2,317,639 + -1.5
2,317,639 + -0.3
2,317,639 + -0.6
2,317,640 - +0.1
2,317,643 + +0.0
2,317,643 + +0.8
2,317,644 - +0.1
2,317,705 + +0.3
2,317,793 - EX28DRAFT_2289 0.17 +0.4
2,317,797 + EX28DRAFT_2289 0.18 +0.4
2,317,976 - EX28DRAFT_2289 0.41 -0.2
2,318,015 + EX28DRAFT_2289 0.46 +0.5
2,318,119 + EX28DRAFT_2289 0.59 -0.1
2,318,204 + EX28DRAFT_2289 0.70 -0.3
2,318,204 + EX28DRAFT_2289 0.70 +1.7
2,318,204 + EX28DRAFT_2289 0.70 +0.1
2,318,204 + EX28DRAFT_2289 0.70 +1.2
2,318,498 + +0.8
2,318,498 + +0.1
2,318,499 - +1.1
2,318,499 - +0.3
2,318,499 - -0.3
2,318,587 - +0.4
2,318,848 + +0.2
2,318,848 + -0.1
2,318,848 + +0.1
2,318,848 + +0.9
2,318,848 + +0.7
2,318,849 - +0.3
2,318,883 + -0.0
2,318,908 + +0.1
2,318,908 + -0.2
2,318,909 - -1.8

Or see this region's nucleotide sequence