Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2198

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2197 and EX28DRAFT_2198 overlap by 11 nucleotidesEX28DRAFT_2198 and EX28DRAFT_2199 are separated by 9 nucleotides EX28DRAFT_2197: EX28DRAFT_2197 - ABC-type multidrug transport system, ATPase component, at 2,220,764 to 2,222,503 _2197 EX28DRAFT_2198: EX28DRAFT_2198 - ABC-type multidrug transport system, permease component, at 2,222,493 to 2,223,626 _2198 EX28DRAFT_2199: EX28DRAFT_2199 - ABC-type multidrug transport system, permease component, at 2,223,636 to 2,224,742 _2199 Position (kb) 2222 2223 2224Strain fitness (log2 ratio) -1 0 1 2at 2221.629 kb on + strand, within EX28DRAFT_2197at 2221.720 kb on + strand, within EX28DRAFT_2197at 2221.720 kb on + strand, within EX28DRAFT_2197at 2221.721 kb on - strand, within EX28DRAFT_2197at 2221.979 kb on + strand, within EX28DRAFT_2197at 2221.979 kb on + strand, within EX28DRAFT_2197at 2221.980 kb on - strand, within EX28DRAFT_2197at 2221.981 kb on + strand, within EX28DRAFT_2197at 2221.981 kb on + strand, within EX28DRAFT_2197at 2221.981 kb on + strand, within EX28DRAFT_2197at 2221.982 kb on - strand, within EX28DRAFT_2197at 2222.158 kb on + strand, within EX28DRAFT_2197at 2222.336 kb on + strandat 2222.501 kb on + strandat 2222.615 kb on + strand, within EX28DRAFT_2198at 2222.616 kb on - strand, within EX28DRAFT_2198at 2222.634 kb on - strand, within EX28DRAFT_2198at 2222.846 kb on + strand, within EX28DRAFT_2198at 2222.847 kb on - strand, within EX28DRAFT_2198at 2222.870 kb on + strand, within EX28DRAFT_2198at 2223.039 kb on - strand, within EX28DRAFT_2198at 2223.062 kb on + strand, within EX28DRAFT_2198at 2223.192 kb on + strand, within EX28DRAFT_2198at 2223.195 kb on + strand, within EX28DRAFT_2198at 2223.196 kb on - strand, within EX28DRAFT_2198at 2223.196 kb on - strand, within EX28DRAFT_2198at 2223.196 kb on - strand, within EX28DRAFT_2198at 2223.196 kb on - strand, within EX28DRAFT_2198at 2223.308 kb on - strand, within EX28DRAFT_2198at 2223.441 kb on - strand, within EX28DRAFT_2198at 2223.468 kb on + strand, within EX28DRAFT_2198at 2223.468 kb on + strand, within EX28DRAFT_2198at 2223.468 kb on + strand, within EX28DRAFT_2198at 2223.468 kb on + strand, within EX28DRAFT_2198at 2223.468 kb on + strand, within EX28DRAFT_2198at 2223.469 kb on - strand, within EX28DRAFT_2198at 2223.469 kb on - strand, within EX28DRAFT_2198at 2223.469 kb on - strand, within EX28DRAFT_2198at 2223.469 kb on - strand, within EX28DRAFT_2198at 2223.469 kb on - strand, within EX28DRAFT_2198at 2223.469 kb on - strand, within EX28DRAFT_2198at 2223.469 kb on - strand, within EX28DRAFT_2198at 2223.469 kb on - strand, within EX28DRAFT_2198at 2223.473 kb on + strand, within EX28DRAFT_2198at 2223.562 kb on + strandat 2223.563 kb on - strandat 2224.007 kb on + strand, within EX28DRAFT_2199at 2224.038 kb on + strand, within EX28DRAFT_2199at 2224.039 kb on - strand, within EX28DRAFT_2199at 2224.128 kb on + strand, within EX28DRAFT_2199at 2224.129 kb on - strand, within EX28DRAFT_2199at 2224.146 kb on + strand, within EX28DRAFT_2199at 2224.146 kb on + strand, within EX28DRAFT_2199at 2224.147 kb on - strand, within EX28DRAFT_2199at 2224.508 kb on + strand, within EX28DRAFT_2199at 2224.537 kb on - strand, within EX28DRAFT_2199at 2224.608 kb on - strand, within EX28DRAFT_2199

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,221,629 + EX28DRAFT_2197 0.50 -0.3
2,221,720 + EX28DRAFT_2197 0.55 -0.4
2,221,720 + EX28DRAFT_2197 0.55 +0.4
2,221,721 - EX28DRAFT_2197 0.55 -0.5
2,221,979 + EX28DRAFT_2197 0.70 +0.1
2,221,979 + EX28DRAFT_2197 0.70 +2.5
2,221,980 - EX28DRAFT_2197 0.70 -0.6
2,221,981 + EX28DRAFT_2197 0.70 -0.0
2,221,981 + EX28DRAFT_2197 0.70 -0.0
2,221,981 + EX28DRAFT_2197 0.70 +0.3
2,221,982 - EX28DRAFT_2197 0.70 -0.0
2,222,158 + EX28DRAFT_2197 0.80 -0.0
2,222,336 + -0.2
2,222,501 + +0.5
2,222,615 + EX28DRAFT_2198 0.11 +1.4
2,222,616 - EX28DRAFT_2198 0.11 -0.5
2,222,634 - EX28DRAFT_2198 0.12 +1.3
2,222,846 + EX28DRAFT_2198 0.31 -0.2
2,222,847 - EX28DRAFT_2198 0.31 -0.7
2,222,870 + EX28DRAFT_2198 0.33 +0.8
2,223,039 - EX28DRAFT_2198 0.48 -0.1
2,223,062 + EX28DRAFT_2198 0.50 +1.3
2,223,192 + EX28DRAFT_2198 0.62 -0.0
2,223,195 + EX28DRAFT_2198 0.62 +0.1
2,223,196 - EX28DRAFT_2198 0.62 -0.1
2,223,196 - EX28DRAFT_2198 0.62 -0.8
2,223,196 - EX28DRAFT_2198 0.62 -0.2
2,223,196 - EX28DRAFT_2198 0.62 +0.1
2,223,308 - EX28DRAFT_2198 0.72 +0.7
2,223,441 - EX28DRAFT_2198 0.84 +0.4
2,223,468 + EX28DRAFT_2198 0.86 -0.4
2,223,468 + EX28DRAFT_2198 0.86 +0.1
2,223,468 + EX28DRAFT_2198 0.86 +0.9
2,223,468 + EX28DRAFT_2198 0.86 -0.3
2,223,468 + EX28DRAFT_2198 0.86 -0.6
2,223,469 - EX28DRAFT_2198 0.86 +0.4
2,223,469 - EX28DRAFT_2198 0.86 +0.1
2,223,469 - EX28DRAFT_2198 0.86 +0.3
2,223,469 - EX28DRAFT_2198 0.86 +0.3
2,223,469 - EX28DRAFT_2198 0.86 +0.1
2,223,469 - EX28DRAFT_2198 0.86 +0.2
2,223,469 - EX28DRAFT_2198 0.86 -0.8
2,223,469 - EX28DRAFT_2198 0.86 +0.8
2,223,473 + EX28DRAFT_2198 0.86 -0.2
2,223,562 + +0.5
2,223,563 - -0.1
2,224,007 + EX28DRAFT_2199 0.34 +0.7
2,224,038 + EX28DRAFT_2199 0.36 -0.2
2,224,039 - EX28DRAFT_2199 0.36 -1.2
2,224,128 + EX28DRAFT_2199 0.44 +0.1
2,224,129 - EX28DRAFT_2199 0.45 -0.0
2,224,146 + EX28DRAFT_2199 0.46 +1.8
2,224,146 + EX28DRAFT_2199 0.46 +0.3
2,224,147 - EX28DRAFT_2199 0.46 +0.1
2,224,508 + EX28DRAFT_2199 0.79 -0.1
2,224,537 - EX28DRAFT_2199 0.81 -0.3
2,224,608 - EX28DRAFT_2199 0.88 -0.0

Or see this region's nucleotide sequence