Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2197 and EX28DRAFT_2198 overlap by 11 nucleotides EX28DRAFT_2198 and EX28DRAFT_2199 are separated by 9 nucleotides
EX28DRAFT_2197: EX28DRAFT_2197 - ABC-type multidrug transport system, ATPase component, at 2,220,764 to 2,222,503
_2197
EX28DRAFT_2198: EX28DRAFT_2198 - ABC-type multidrug transport system, permease component, at 2,222,493 to 2,223,626
_2198
EX28DRAFT_2199: EX28DRAFT_2199 - ABC-type multidrug transport system, permease component, at 2,223,636 to 2,224,742
_2199
Position (kb)
2222
2223
2224 Strain fitness (log2 ratio)
-1
0
1
2 at 2221.629 kb on + strand, within EX28DRAFT_2197 at 2221.720 kb on + strand, within EX28DRAFT_2197 at 2221.720 kb on + strand, within EX28DRAFT_2197 at 2221.721 kb on - strand, within EX28DRAFT_2197 at 2221.979 kb on + strand, within EX28DRAFT_2197 at 2221.979 kb on + strand, within EX28DRAFT_2197 at 2221.980 kb on - strand, within EX28DRAFT_2197 at 2221.981 kb on + strand, within EX28DRAFT_2197 at 2221.981 kb on + strand, within EX28DRAFT_2197 at 2221.981 kb on + strand, within EX28DRAFT_2197 at 2221.982 kb on - strand, within EX28DRAFT_2197 at 2222.158 kb on + strand, within EX28DRAFT_2197 at 2222.336 kb on + strand at 2222.501 kb on + strand at 2222.615 kb on + strand, within EX28DRAFT_2198 at 2222.616 kb on - strand, within EX28DRAFT_2198 at 2222.634 kb on - strand, within EX28DRAFT_2198 at 2222.846 kb on + strand, within EX28DRAFT_2198 at 2222.847 kb on - strand, within EX28DRAFT_2198 at 2222.870 kb on + strand, within EX28DRAFT_2198 at 2223.039 kb on - strand, within EX28DRAFT_2198 at 2223.062 kb on + strand, within EX28DRAFT_2198 at 2223.192 kb on + strand, within EX28DRAFT_2198 at 2223.195 kb on + strand, within EX28DRAFT_2198 at 2223.196 kb on - strand, within EX28DRAFT_2198 at 2223.196 kb on - strand, within EX28DRAFT_2198 at 2223.196 kb on - strand, within EX28DRAFT_2198 at 2223.196 kb on - strand, within EX28DRAFT_2198 at 2223.308 kb on - strand, within EX28DRAFT_2198 at 2223.441 kb on - strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.473 kb on + strand, within EX28DRAFT_2198 at 2223.562 kb on + strand at 2223.563 kb on - strand at 2224.007 kb on + strand, within EX28DRAFT_2199 at 2224.038 kb on + strand, within EX28DRAFT_2199 at 2224.039 kb on - strand, within EX28DRAFT_2199 at 2224.128 kb on + strand, within EX28DRAFT_2199 at 2224.129 kb on - strand, within EX28DRAFT_2199 at 2224.146 kb on + strand, within EX28DRAFT_2199 at 2224.146 kb on + strand, within EX28DRAFT_2199 at 2224.147 kb on - strand, within EX28DRAFT_2199 at 2224.508 kb on + strand, within EX28DRAFT_2199 at 2224.537 kb on - strand, within EX28DRAFT_2199 at 2224.608 kb on - strand, within EX28DRAFT_2199
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,221,629 + EX28DRAFT_2197 0.50 -0.3 2,221,720 + EX28DRAFT_2197 0.55 -0.4 2,221,720 + EX28DRAFT_2197 0.55 +0.4 2,221,721 - EX28DRAFT_2197 0.55 -0.5 2,221,979 + EX28DRAFT_2197 0.70 +0.1 2,221,979 + EX28DRAFT_2197 0.70 +2.5 2,221,980 - EX28DRAFT_2197 0.70 -0.6 2,221,981 + EX28DRAFT_2197 0.70 -0.0 2,221,981 + EX28DRAFT_2197 0.70 -0.0 2,221,981 + EX28DRAFT_2197 0.70 +0.3 2,221,982 - EX28DRAFT_2197 0.70 -0.0 2,222,158 + EX28DRAFT_2197 0.80 -0.0 2,222,336 + -0.2 2,222,501 + +0.5 2,222,615 + EX28DRAFT_2198 0.11 +1.4 2,222,616 - EX28DRAFT_2198 0.11 -0.5 2,222,634 - EX28DRAFT_2198 0.12 +1.3 2,222,846 + EX28DRAFT_2198 0.31 -0.2 2,222,847 - EX28DRAFT_2198 0.31 -0.7 2,222,870 + EX28DRAFT_2198 0.33 +0.8 2,223,039 - EX28DRAFT_2198 0.48 -0.1 2,223,062 + EX28DRAFT_2198 0.50 +1.3 2,223,192 + EX28DRAFT_2198 0.62 -0.0 2,223,195 + EX28DRAFT_2198 0.62 +0.1 2,223,196 - EX28DRAFT_2198 0.62 -0.1 2,223,196 - EX28DRAFT_2198 0.62 -0.8 2,223,196 - EX28DRAFT_2198 0.62 -0.2 2,223,196 - EX28DRAFT_2198 0.62 +0.1 2,223,308 - EX28DRAFT_2198 0.72 +0.7 2,223,441 - EX28DRAFT_2198 0.84 +0.4 2,223,468 + EX28DRAFT_2198 0.86 -0.4 2,223,468 + EX28DRAFT_2198 0.86 +0.1 2,223,468 + EX28DRAFT_2198 0.86 +0.9 2,223,468 + EX28DRAFT_2198 0.86 -0.3 2,223,468 + EX28DRAFT_2198 0.86 -0.6 2,223,469 - EX28DRAFT_2198 0.86 +0.4 2,223,469 - EX28DRAFT_2198 0.86 +0.1 2,223,469 - EX28DRAFT_2198 0.86 +0.3 2,223,469 - EX28DRAFT_2198 0.86 +0.3 2,223,469 - EX28DRAFT_2198 0.86 +0.1 2,223,469 - EX28DRAFT_2198 0.86 +0.2 2,223,469 - EX28DRAFT_2198 0.86 -0.8 2,223,469 - EX28DRAFT_2198 0.86 +0.8 2,223,473 + EX28DRAFT_2198 0.86 -0.2 2,223,562 + +0.5 2,223,563 - -0.1 2,224,007 + EX28DRAFT_2199 0.34 +0.7 2,224,038 + EX28DRAFT_2199 0.36 -0.2 2,224,039 - EX28DRAFT_2199 0.36 -1.2 2,224,128 + EX28DRAFT_2199 0.44 +0.1 2,224,129 - EX28DRAFT_2199 0.45 -0.0 2,224,146 + EX28DRAFT_2199 0.46 +1.8 2,224,146 + EX28DRAFT_2199 0.46 +0.3 2,224,147 - EX28DRAFT_2199 0.46 +0.1 2,224,508 + EX28DRAFT_2199 0.79 -0.1 2,224,537 - EX28DRAFT_2199 0.81 -0.3 2,224,608 - EX28DRAFT_2199 0.88 -0.0
Or see this region's nucleotide sequence