Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2193 and EX28DRAFT_2194 are separated by 97 nucleotides EX28DRAFT_2194 and EX28DRAFT_2195 are separated by 207 nucleotides EX28DRAFT_2195 and EX28DRAFT_2196 overlap by 4 nucleotides
EX28DRAFT_2193: EX28DRAFT_2193 - Rad3-related DNA helicases, at 2,215,234 to 2,217,411
_2193
EX28DRAFT_2194: EX28DRAFT_2194 - Superfamily II DNA and RNA helicases, at 2,217,509 to 2,218,894
_2194
EX28DRAFT_2195: EX28DRAFT_2195 - transcriptional regulator, TetR family, at 2,219,102 to 2,219,779
_2195
EX28DRAFT_2196: EX28DRAFT_2196 - Multidrug resistance efflux pump, at 2,219,776 to 2,220,771
_2196
Position (kb)
2217
2218
2219 Strain fitness (log2 ratio)
-1
0
1
2 at 2216.691 kb on + strand, within EX28DRAFT_2193 at 2216.810 kb on + strand, within EX28DRAFT_2193 at 2216.913 kb on + strand, within EX28DRAFT_2193 at 2216.913 kb on + strand, within EX28DRAFT_2193 at 2216.914 kb on - strand, within EX28DRAFT_2193 at 2216.914 kb on - strand, within EX28DRAFT_2193 at 2216.914 kb on - strand, within EX28DRAFT_2193 at 2216.914 kb on - strand, within EX28DRAFT_2193 at 2216.965 kb on - strand, within EX28DRAFT_2193 at 2217.368 kb on + strand at 2217.368 kb on + strand at 2217.368 kb on + strand at 2217.368 kb on + strand at 2217.369 kb on - strand at 2217.369 kb on - strand at 2217.369 kb on - strand at 2217.426 kb on + strand at 2217.432 kb on - strand at 2217.433 kb on + strand at 2217.434 kb on - strand at 2217.898 kb on + strand, within EX28DRAFT_2194 at 2217.909 kb on + strand, within EX28DRAFT_2194 at 2217.909 kb on + strand, within EX28DRAFT_2194 at 2218.165 kb on + strand, within EX28DRAFT_2194 at 2218.166 kb on - strand, within EX28DRAFT_2194 at 2218.834 kb on - strand at 2218.895 kb on - strand at 2218.928 kb on + strand at 2218.943 kb on + strand at 2218.943 kb on + strand at 2218.943 kb on + strand at 2218.943 kb on + strand at 2218.944 kb on - strand at 2218.944 kb on - strand at 2218.944 kb on - strand at 2218.944 kb on - strand at 2218.945 kb on + strand at 2218.945 kb on + strand at 2218.945 kb on + strand at 2219.023 kb on + strand at 2219.064 kb on - strand at 2219.107 kb on + strand at 2219.253 kb on - strand, within EX28DRAFT_2195 at 2219.274 kb on + strand, within EX28DRAFT_2195 at 2219.274 kb on + strand, within EX28DRAFT_2195 at 2219.275 kb on - strand, within EX28DRAFT_2195 at 2219.275 kb on - strand, within EX28DRAFT_2195 at 2219.275 kb on - strand, within EX28DRAFT_2195 at 2219.417 kb on - strand, within EX28DRAFT_2195 at 2219.443 kb on + strand, within EX28DRAFT_2195 at 2219.444 kb on - strand, within EX28DRAFT_2195 at 2219.465 kb on - strand, within EX28DRAFT_2195 at 2219.564 kb on + strand, within EX28DRAFT_2195 at 2219.565 kb on - strand, within EX28DRAFT_2195 at 2219.566 kb on + strand, within EX28DRAFT_2195 at 2219.566 kb on + strand, within EX28DRAFT_2195 at 2219.866 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,216,691 + EX28DRAFT_2193 0.67 -0.3 2,216,810 + EX28DRAFT_2193 0.72 +0.5 2,216,913 + EX28DRAFT_2193 0.77 +2.7 2,216,913 + EX28DRAFT_2193 0.77 +0.6 2,216,914 - EX28DRAFT_2193 0.77 -0.4 2,216,914 - EX28DRAFT_2193 0.77 -0.1 2,216,914 - EX28DRAFT_2193 0.77 -0.1 2,216,914 - EX28DRAFT_2193 0.77 +0.0 2,216,965 - EX28DRAFT_2193 0.79 -0.1 2,217,368 + +0.2 2,217,368 + -0.7 2,217,368 + +0.3 2,217,368 + +0.0 2,217,369 - -0.2 2,217,369 - -0.3 2,217,369 - -0.2 2,217,426 + -0.7 2,217,432 - -0.0 2,217,433 + -0.1 2,217,434 - +0.0 2,217,898 + EX28DRAFT_2194 0.28 -1.5 2,217,909 + EX28DRAFT_2194 0.29 +0.2 2,217,909 + EX28DRAFT_2194 0.29 -0.2 2,218,165 + EX28DRAFT_2194 0.47 +0.3 2,218,166 - EX28DRAFT_2194 0.47 -1.2 2,218,834 - +0.9 2,218,895 - -0.1 2,218,928 + -0.5 2,218,943 + -0.1 2,218,943 + -0.1 2,218,943 + +0.4 2,218,943 + +0.0 2,218,944 - -0.1 2,218,944 - -0.4 2,218,944 - +0.2 2,218,944 - +0.5 2,218,945 + +1.1 2,218,945 + -0.1 2,218,945 + -0.4 2,219,023 + +0.5 2,219,064 - -0.6 2,219,107 + -0.3 2,219,253 - EX28DRAFT_2195 0.22 +0.7 2,219,274 + EX28DRAFT_2195 0.25 +1.8 2,219,274 + EX28DRAFT_2195 0.25 -1.0 2,219,275 - EX28DRAFT_2195 0.26 +0.5 2,219,275 - EX28DRAFT_2195 0.26 +1.2 2,219,275 - EX28DRAFT_2195 0.26 -0.0 2,219,417 - EX28DRAFT_2195 0.46 -0.6 2,219,443 + EX28DRAFT_2195 0.50 +1.1 2,219,444 - EX28DRAFT_2195 0.50 -0.8 2,219,465 - EX28DRAFT_2195 0.54 +0.2 2,219,564 + EX28DRAFT_2195 0.68 +0.3 2,219,565 - EX28DRAFT_2195 0.68 +0.7 2,219,566 + EX28DRAFT_2195 0.68 +0.9 2,219,566 + EX28DRAFT_2195 0.68 -0.7 2,219,866 - -0.7
Or see this region's nucleotide sequence