Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2191 and EX28DRAFT_2192 overlap by 4 nucleotides EX28DRAFT_2192 and EX28DRAFT_2193 overlap by 14 nucleotides
EX28DRAFT_2191: EX28DRAFT_2191 - P pilus assembly protein, pilin FimA, at 2,213,752 to 2,214,747
_2191
EX28DRAFT_2192: EX28DRAFT_2192 - P pilus assembly protein, pilin FimA, at 2,214,744 to 2,215,247
_2192
EX28DRAFT_2193: EX28DRAFT_2193 - Rad3-related DNA helicases, at 2,215,234 to 2,217,411
_2193
Position (kb)
2214
2215
2216 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2213.762 kb on + strand at 2213.763 kb on - strand at 2213.781 kb on - strand at 2213.781 kb on - strand at 2213.781 kb on - strand at 2213.786 kb on + strand at 2213.786 kb on + strand at 2213.786 kb on + strand at 2213.812 kb on - strand at 2213.874 kb on + strand, within EX28DRAFT_2191 at 2213.882 kb on + strand, within EX28DRAFT_2191 at 2213.886 kb on + strand, within EX28DRAFT_2191 at 2213.886 kb on + strand, within EX28DRAFT_2191 at 2213.887 kb on - strand, within EX28DRAFT_2191 at 2213.953 kb on + strand, within EX28DRAFT_2191 at 2213.953 kb on + strand, within EX28DRAFT_2191 at 2213.953 kb on + strand, within EX28DRAFT_2191 at 2213.954 kb on - strand, within EX28DRAFT_2191 at 2213.954 kb on - strand, within EX28DRAFT_2191 at 2213.954 kb on - strand, within EX28DRAFT_2191 at 2213.955 kb on + strand, within EX28DRAFT_2191 at 2213.955 kb on + strand, within EX28DRAFT_2191 at 2213.955 kb on + strand, within EX28DRAFT_2191 at 2213.956 kb on - strand, within EX28DRAFT_2191 at 2213.956 kb on - strand, within EX28DRAFT_2191 at 2213.956 kb on - strand, within EX28DRAFT_2191 at 2214.034 kb on + strand, within EX28DRAFT_2191 at 2214.035 kb on - strand, within EX28DRAFT_2191 at 2214.075 kb on + strand, within EX28DRAFT_2191 at 2214.252 kb on + strand, within EX28DRAFT_2191 at 2214.281 kb on + strand, within EX28DRAFT_2191 at 2214.313 kb on + strand, within EX28DRAFT_2191 at 2214.353 kb on + strand, within EX28DRAFT_2191 at 2214.470 kb on + strand, within EX28DRAFT_2191 at 2214.470 kb on + strand, within EX28DRAFT_2191 at 2214.470 kb on + strand, within EX28DRAFT_2191 at 2214.471 kb on - strand, within EX28DRAFT_2191 at 2214.536 kb on + strand, within EX28DRAFT_2191 at 2214.613 kb on + strand, within EX28DRAFT_2191 at 2214.613 kb on + strand, within EX28DRAFT_2191 at 2214.613 kb on + strand, within EX28DRAFT_2191 at 2214.614 kb on - strand, within EX28DRAFT_2191 at 2214.614 kb on - strand, within EX28DRAFT_2191 at 2214.615 kb on + strand, within EX28DRAFT_2191 at 2214.615 kb on + strand, within EX28DRAFT_2191 at 2214.616 kb on - strand, within EX28DRAFT_2191 at 2214.616 kb on - strand, within EX28DRAFT_2191 at 2214.616 kb on - strand, within EX28DRAFT_2191 at 2214.616 kb on - strand, within EX28DRAFT_2191 at 2214.616 kb on - strand, within EX28DRAFT_2191 at 2214.616 kb on - strand, within EX28DRAFT_2191 at 2214.616 kb on - strand, within EX28DRAFT_2191 at 2214.616 kb on - strand, within EX28DRAFT_2191 at 2214.616 kb on - strand, within EX28DRAFT_2191 at 2214.655 kb on + strand at 2214.656 kb on - strand at 2214.766 kb on + strand at 2214.851 kb on - strand, within EX28DRAFT_2192 at 2214.917 kb on - strand, within EX28DRAFT_2192 at 2214.950 kb on - strand, within EX28DRAFT_2192 at 2214.950 kb on - strand, within EX28DRAFT_2192 at 2214.950 kb on - strand, within EX28DRAFT_2192 at 2215.016 kb on + strand, within EX28DRAFT_2192 at 2215.017 kb on - strand, within EX28DRAFT_2192 at 2215.239 kb on + strand at 2215.240 kb on - strand at 2215.579 kb on - strand, within EX28DRAFT_2193 at 2215.736 kb on - strand, within EX28DRAFT_2193 at 2215.736 kb on - strand, within EX28DRAFT_2193
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,213,762 + +0.5 2,213,763 - -0.2 2,213,781 - +0.1 2,213,781 - +0.6 2,213,781 - -0.2 2,213,786 + +0.3 2,213,786 + -0.8 2,213,786 + -0.4 2,213,812 - +0.3 2,213,874 + EX28DRAFT_2191 0.12 +0.6 2,213,882 + EX28DRAFT_2191 0.13 +0.6 2,213,886 + EX28DRAFT_2191 0.13 -0.1 2,213,886 + EX28DRAFT_2191 0.13 +0.0 2,213,887 - EX28DRAFT_2191 0.14 +0.4 2,213,953 + EX28DRAFT_2191 0.20 -1.3 2,213,953 + EX28DRAFT_2191 0.20 -0.1 2,213,953 + EX28DRAFT_2191 0.20 -0.3 2,213,954 - EX28DRAFT_2191 0.20 -0.0 2,213,954 - EX28DRAFT_2191 0.20 -0.2 2,213,954 - EX28DRAFT_2191 0.20 +0.6 2,213,955 + EX28DRAFT_2191 0.20 -0.5 2,213,955 + EX28DRAFT_2191 0.20 -0.0 2,213,955 + EX28DRAFT_2191 0.20 +0.2 2,213,956 - EX28DRAFT_2191 0.20 +0.3 2,213,956 - EX28DRAFT_2191 0.20 -0.1 2,213,956 - EX28DRAFT_2191 0.20 -0.7 2,214,034 + EX28DRAFT_2191 0.28 -0.1 2,214,035 - EX28DRAFT_2191 0.28 +1.4 2,214,075 + EX28DRAFT_2191 0.32 +0.1 2,214,252 + EX28DRAFT_2191 0.50 +0.1 2,214,281 + EX28DRAFT_2191 0.53 +0.4 2,214,313 + EX28DRAFT_2191 0.56 +0.2 2,214,353 + EX28DRAFT_2191 0.60 -0.3 2,214,470 + EX28DRAFT_2191 0.72 +0.2 2,214,470 + EX28DRAFT_2191 0.72 -0.2 2,214,470 + EX28DRAFT_2191 0.72 +0.6 2,214,471 - EX28DRAFT_2191 0.72 -1.3 2,214,536 + EX28DRAFT_2191 0.79 +0.6 2,214,613 + EX28DRAFT_2191 0.86 +1.1 2,214,613 + EX28DRAFT_2191 0.86 -0.2 2,214,613 + EX28DRAFT_2191 0.86 +0.0 2,214,614 - EX28DRAFT_2191 0.87 -0.2 2,214,614 - EX28DRAFT_2191 0.87 +0.0 2,214,615 + EX28DRAFT_2191 0.87 +2.8 2,214,615 + EX28DRAFT_2191 0.87 -0.4 2,214,616 - EX28DRAFT_2191 0.87 +0.0 2,214,616 - EX28DRAFT_2191 0.87 +0.2 2,214,616 - EX28DRAFT_2191 0.87 +0.2 2,214,616 - EX28DRAFT_2191 0.87 -0.3 2,214,616 - EX28DRAFT_2191 0.87 +0.2 2,214,616 - EX28DRAFT_2191 0.87 +0.3 2,214,616 - EX28DRAFT_2191 0.87 -0.6 2,214,616 - EX28DRAFT_2191 0.87 -0.2 2,214,616 - EX28DRAFT_2191 0.87 -0.3 2,214,655 + -0.2 2,214,656 - +0.7 2,214,766 + +2.4 2,214,851 - EX28DRAFT_2192 0.21 +0.7 2,214,917 - EX28DRAFT_2192 0.34 +0.5 2,214,950 - EX28DRAFT_2192 0.41 +0.3 2,214,950 - EX28DRAFT_2192 0.41 -0.4 2,214,950 - EX28DRAFT_2192 0.41 +0.7 2,215,016 + EX28DRAFT_2192 0.54 +0.8 2,215,017 - EX28DRAFT_2192 0.54 -0.2 2,215,239 + +0.2 2,215,240 - +0.2 2,215,579 - EX28DRAFT_2193 0.16 -0.3 2,215,736 - EX28DRAFT_2193 0.23 +0.1 2,215,736 - EX28DRAFT_2193 0.23 +0.6
Or see this region's nucleotide sequence