Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2099

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2098 and EX28DRAFT_2099 are separated by 143 nucleotidesEX28DRAFT_2099 and EX28DRAFT_2100 are separated by 351 nucleotidesEX28DRAFT_2100 and EX28DRAFT_2101 are separated by 63 nucleotides EX28DRAFT_2098: EX28DRAFT_2098 - spermidine/putrescine ABC transporter ATP-binding subunit, at 2,121,664 to 2,122,797 _2098 EX28DRAFT_2099: EX28DRAFT_2099 - Spermidine/putrescine-binding periplasmic protein, at 2,122,941 to 2,124,053 _2099 EX28DRAFT_2100: EX28DRAFT_2100 - Putative bacterial sensory transduction regulator, at 2,124,405 to 2,124,881 _2100 EX28DRAFT_2101: EX28DRAFT_2101 - alpha-L-glutamate ligase, RimK family, at 2,124,945 to 2,125,868 _2101 Position (kb) 2122 2123 2124 2125Strain fitness (log2 ratio) -1 0 1at 2122.140 kb on + strand, within EX28DRAFT_2098at 2122.140 kb on + strand, within EX28DRAFT_2098at 2122.237 kb on - strand, within EX28DRAFT_2098at 2122.289 kb on - strand, within EX28DRAFT_2098at 2122.670 kb on + strand, within EX28DRAFT_2098at 2122.670 kb on + strand, within EX28DRAFT_2098at 2122.670 kb on + strand, within EX28DRAFT_2098at 2122.670 kb on + strand, within EX28DRAFT_2098at 2122.671 kb on - strand, within EX28DRAFT_2098at 2122.671 kb on - strand, within EX28DRAFT_2098at 2122.671 kb on - strand, within EX28DRAFT_2098at 2122.671 kb on - strand, within EX28DRAFT_2098at 2122.674 kb on + strand, within EX28DRAFT_2098at 2122.674 kb on + strand, within EX28DRAFT_2098at 2122.815 kb on - strandat 2122.893 kb on - strandat 2123.048 kb on - strandat 2123.161 kb on + strand, within EX28DRAFT_2099at 2123.258 kb on - strand, within EX28DRAFT_2099at 2123.258 kb on - strand, within EX28DRAFT_2099at 2123.368 kb on + strand, within EX28DRAFT_2099at 2123.386 kb on + strand, within EX28DRAFT_2099at 2123.438 kb on - strand, within EX28DRAFT_2099at 2123.438 kb on - strand, within EX28DRAFT_2099at 2123.450 kb on + strand, within EX28DRAFT_2099at 2123.476 kb on + strand, within EX28DRAFT_2099at 2123.477 kb on - strand, within EX28DRAFT_2099at 2123.477 kb on - strand, within EX28DRAFT_2099at 2123.630 kb on - strand, within EX28DRAFT_2099at 2123.657 kb on - strand, within EX28DRAFT_2099at 2123.668 kb on + strand, within EX28DRAFT_2099at 2123.669 kb on - strand, within EX28DRAFT_2099at 2123.935 kb on + strand, within EX28DRAFT_2099at 2124.038 kb on + strandat 2124.054 kb on - strandat 2124.060 kb on - strandat 2124.112 kb on + strandat 2124.146 kb on + strandat 2124.208 kb on + strandat 2124.209 kb on - strandat 2124.209 kb on - strandat 2124.277 kb on + strandat 2124.277 kb on + strandat 2124.461 kb on - strand, within EX28DRAFT_2100at 2124.610 kb on - strand, within EX28DRAFT_2100at 2124.774 kb on - strand, within EX28DRAFT_2100at 2124.774 kb on - strand, within EX28DRAFT_2100at 2124.818 kb on + strand, within EX28DRAFT_2100at 2124.846 kb on + strandat 2124.847 kb on - strandat 2124.860 kb on + strandat 2124.861 kb on - strandat 2124.864 kb on + strandat 2124.865 kb on - strandat 2124.901 kb on + strandat 2124.903 kb on + strandat 2124.903 kb on + strandat 2124.903 kb on + strandat 2124.904 kb on - strandat 2124.904 kb on - strandat 2124.904 kb on - strandat 2124.914 kb on + strandat 2124.915 kb on - strandat 2124.915 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,122,140 + EX28DRAFT_2098 0.42 -0.1
2,122,140 + EX28DRAFT_2098 0.42 +0.1
2,122,237 - EX28DRAFT_2098 0.51 +0.1
2,122,289 - EX28DRAFT_2098 0.55 +1.0
2,122,670 + EX28DRAFT_2098 0.89 +0.2
2,122,670 + EX28DRAFT_2098 0.89 +1.0
2,122,670 + EX28DRAFT_2098 0.89 -0.4
2,122,670 + EX28DRAFT_2098 0.89 +0.2
2,122,671 - EX28DRAFT_2098 0.89 +0.1
2,122,671 - EX28DRAFT_2098 0.89 +0.8
2,122,671 - EX28DRAFT_2098 0.89 -0.2
2,122,671 - EX28DRAFT_2098 0.89 -0.3
2,122,674 + EX28DRAFT_2098 0.89 +0.5
2,122,674 + EX28DRAFT_2098 0.89 +0.8
2,122,815 - -0.3
2,122,893 - +0.4
2,123,048 - +0.0
2,123,161 + EX28DRAFT_2099 0.20 +0.1
2,123,258 - EX28DRAFT_2099 0.28 -0.1
2,123,258 - EX28DRAFT_2099 0.28 +0.3
2,123,368 + EX28DRAFT_2099 0.38 +0.1
2,123,386 + EX28DRAFT_2099 0.40 -0.1
2,123,438 - EX28DRAFT_2099 0.45 +0.2
2,123,438 - EX28DRAFT_2099 0.45 +1.1
2,123,450 + EX28DRAFT_2099 0.46 +0.0
2,123,476 + EX28DRAFT_2099 0.48 +0.3
2,123,477 - EX28DRAFT_2099 0.48 +0.2
2,123,477 - EX28DRAFT_2099 0.48 -0.3
2,123,630 - EX28DRAFT_2099 0.62 -0.2
2,123,657 - EX28DRAFT_2099 0.64 +0.3
2,123,668 + EX28DRAFT_2099 0.65 +0.5
2,123,669 - EX28DRAFT_2099 0.65 +0.4
2,123,935 + EX28DRAFT_2099 0.89 +0.9
2,124,038 + +0.1
2,124,054 - +0.1
2,124,060 - -0.0
2,124,112 + -0.0
2,124,146 + -0.1
2,124,208 + -0.1
2,124,209 - +0.0
2,124,209 - -1.6
2,124,277 + +0.0
2,124,277 + +0.5
2,124,461 - EX28DRAFT_2100 0.12 -0.1
2,124,610 - EX28DRAFT_2100 0.43 +0.2
2,124,774 - EX28DRAFT_2100 0.77 +0.1
2,124,774 - EX28DRAFT_2100 0.77 +0.3
2,124,818 + EX28DRAFT_2100 0.87 -0.1
2,124,846 + +0.2
2,124,847 - -0.2
2,124,860 + -0.1
2,124,861 - +0.1
2,124,864 + -0.4
2,124,865 - +0.0
2,124,901 + +0.4
2,124,903 + +0.6
2,124,903 + -0.6
2,124,903 + +0.3
2,124,904 - +0.0
2,124,904 - +0.7
2,124,904 - +0.8
2,124,914 + +0.3
2,124,915 - +0.0
2,124,915 - -0.3

Or see this region's nucleotide sequence