Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2098 and EX28DRAFT_2099 are separated by 143 nucleotides EX28DRAFT_2099 and EX28DRAFT_2100 are separated by 351 nucleotides EX28DRAFT_2100 and EX28DRAFT_2101 are separated by 63 nucleotides
EX28DRAFT_2098: EX28DRAFT_2098 - spermidine/putrescine ABC transporter ATP-binding subunit, at 2,121,664 to 2,122,797
_2098
EX28DRAFT_2099: EX28DRAFT_2099 - Spermidine/putrescine-binding periplasmic protein, at 2,122,941 to 2,124,053
_2099
EX28DRAFT_2100: EX28DRAFT_2100 - Putative bacterial sensory transduction regulator, at 2,124,405 to 2,124,881
_2100
EX28DRAFT_2101: EX28DRAFT_2101 - alpha-L-glutamate ligase, RimK family, at 2,124,945 to 2,125,868
_2101
Position (kb)
2122
2123
2124
2125 Strain fitness (log2 ratio)
-1
0
1 at 2122.140 kb on + strand, within EX28DRAFT_2098 at 2122.140 kb on + strand, within EX28DRAFT_2098 at 2122.237 kb on - strand, within EX28DRAFT_2098 at 2122.289 kb on - strand, within EX28DRAFT_2098 at 2122.670 kb on + strand, within EX28DRAFT_2098 at 2122.670 kb on + strand, within EX28DRAFT_2098 at 2122.670 kb on + strand, within EX28DRAFT_2098 at 2122.670 kb on + strand, within EX28DRAFT_2098 at 2122.671 kb on - strand, within EX28DRAFT_2098 at 2122.671 kb on - strand, within EX28DRAFT_2098 at 2122.671 kb on - strand, within EX28DRAFT_2098 at 2122.671 kb on - strand, within EX28DRAFT_2098 at 2122.674 kb on + strand, within EX28DRAFT_2098 at 2122.674 kb on + strand, within EX28DRAFT_2098 at 2122.815 kb on - strand at 2122.893 kb on - strand at 2123.048 kb on - strand at 2123.161 kb on + strand, within EX28DRAFT_2099 at 2123.258 kb on - strand, within EX28DRAFT_2099 at 2123.258 kb on - strand, within EX28DRAFT_2099 at 2123.368 kb on + strand, within EX28DRAFT_2099 at 2123.386 kb on + strand, within EX28DRAFT_2099 at 2123.438 kb on - strand, within EX28DRAFT_2099 at 2123.438 kb on - strand, within EX28DRAFT_2099 at 2123.450 kb on + strand, within EX28DRAFT_2099 at 2123.476 kb on + strand, within EX28DRAFT_2099 at 2123.477 kb on - strand, within EX28DRAFT_2099 at 2123.477 kb on - strand, within EX28DRAFT_2099 at 2123.630 kb on - strand, within EX28DRAFT_2099 at 2123.657 kb on - strand, within EX28DRAFT_2099 at 2123.668 kb on + strand, within EX28DRAFT_2099 at 2123.669 kb on - strand, within EX28DRAFT_2099 at 2123.935 kb on + strand, within EX28DRAFT_2099 at 2124.038 kb on + strand at 2124.054 kb on - strand at 2124.060 kb on - strand at 2124.112 kb on + strand at 2124.146 kb on + strand at 2124.208 kb on + strand at 2124.209 kb on - strand at 2124.209 kb on - strand at 2124.277 kb on + strand at 2124.277 kb on + strand at 2124.461 kb on - strand, within EX28DRAFT_2100 at 2124.610 kb on - strand, within EX28DRAFT_2100 at 2124.774 kb on - strand, within EX28DRAFT_2100 at 2124.774 kb on - strand, within EX28DRAFT_2100 at 2124.818 kb on + strand, within EX28DRAFT_2100 at 2124.846 kb on + strand at 2124.847 kb on - strand at 2124.860 kb on + strand at 2124.861 kb on - strand at 2124.864 kb on + strand at 2124.865 kb on - strand at 2124.901 kb on + strand at 2124.903 kb on + strand at 2124.903 kb on + strand at 2124.903 kb on + strand at 2124.904 kb on - strand at 2124.904 kb on - strand at 2124.904 kb on - strand at 2124.914 kb on + strand at 2124.915 kb on - strand at 2124.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,122,140 + EX28DRAFT_2098 0.42 -0.1 2,122,140 + EX28DRAFT_2098 0.42 +0.1 2,122,237 - EX28DRAFT_2098 0.51 +0.1 2,122,289 - EX28DRAFT_2098 0.55 +1.0 2,122,670 + EX28DRAFT_2098 0.89 +0.2 2,122,670 + EX28DRAFT_2098 0.89 +1.0 2,122,670 + EX28DRAFT_2098 0.89 -0.4 2,122,670 + EX28DRAFT_2098 0.89 +0.2 2,122,671 - EX28DRAFT_2098 0.89 +0.1 2,122,671 - EX28DRAFT_2098 0.89 +0.8 2,122,671 - EX28DRAFT_2098 0.89 -0.2 2,122,671 - EX28DRAFT_2098 0.89 -0.3 2,122,674 + EX28DRAFT_2098 0.89 +0.5 2,122,674 + EX28DRAFT_2098 0.89 +0.8 2,122,815 - -0.3 2,122,893 - +0.4 2,123,048 - +0.0 2,123,161 + EX28DRAFT_2099 0.20 +0.1 2,123,258 - EX28DRAFT_2099 0.28 -0.1 2,123,258 - EX28DRAFT_2099 0.28 +0.3 2,123,368 + EX28DRAFT_2099 0.38 +0.1 2,123,386 + EX28DRAFT_2099 0.40 -0.1 2,123,438 - EX28DRAFT_2099 0.45 +0.2 2,123,438 - EX28DRAFT_2099 0.45 +1.1 2,123,450 + EX28DRAFT_2099 0.46 +0.0 2,123,476 + EX28DRAFT_2099 0.48 +0.3 2,123,477 - EX28DRAFT_2099 0.48 +0.2 2,123,477 - EX28DRAFT_2099 0.48 -0.3 2,123,630 - EX28DRAFT_2099 0.62 -0.2 2,123,657 - EX28DRAFT_2099 0.64 +0.3 2,123,668 + EX28DRAFT_2099 0.65 +0.5 2,123,669 - EX28DRAFT_2099 0.65 +0.4 2,123,935 + EX28DRAFT_2099 0.89 +0.9 2,124,038 + +0.1 2,124,054 - +0.1 2,124,060 - -0.0 2,124,112 + -0.0 2,124,146 + -0.1 2,124,208 + -0.1 2,124,209 - +0.0 2,124,209 - -1.6 2,124,277 + +0.0 2,124,277 + +0.5 2,124,461 - EX28DRAFT_2100 0.12 -0.1 2,124,610 - EX28DRAFT_2100 0.43 +0.2 2,124,774 - EX28DRAFT_2100 0.77 +0.1 2,124,774 - EX28DRAFT_2100 0.77 +0.3 2,124,818 + EX28DRAFT_2100 0.87 -0.1 2,124,846 + +0.2 2,124,847 - -0.2 2,124,860 + -0.1 2,124,861 - +0.1 2,124,864 + -0.4 2,124,865 - +0.0 2,124,901 + +0.4 2,124,903 + +0.6 2,124,903 + -0.6 2,124,903 + +0.3 2,124,904 - +0.0 2,124,904 - +0.7 2,124,904 - +0.8 2,124,914 + +0.3 2,124,915 - +0.0 2,124,915 - -0.3
Or see this region's nucleotide sequence