Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2093

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2092 and EX28DRAFT_2093 overlap by 17 nucleotidesEX28DRAFT_2093 and EX28DRAFT_2094 are separated by 116 nucleotides EX28DRAFT_2092: EX28DRAFT_2092 - His Kinase A (phospho-acceptor) domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, at 2,115,872 to 2,117,341 _2092 EX28DRAFT_2093: EX28DRAFT_2093 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 2,117,325 to 2,118,032 _2093 EX28DRAFT_2094: EX28DRAFT_2094 - 23S rRNA (uracil-5-)-methyltransferase RumB, at 2,118,149 to 2,119,279 _2094 Position (kb) 2117 2118 2119Strain fitness (log2 ratio) -1 0 1 2at 2116.331 kb on - strand, within EX28DRAFT_2092at 2116.419 kb on + strand, within EX28DRAFT_2092at 2116.755 kb on - strand, within EX28DRAFT_2092at 2116.870 kb on + strand, within EX28DRAFT_2092at 2116.871 kb on - strand, within EX28DRAFT_2092at 2116.871 kb on - strand, within EX28DRAFT_2092at 2116.875 kb on + strand, within EX28DRAFT_2092at 2116.882 kb on - strand, within EX28DRAFT_2092at 2116.933 kb on + strand, within EX28DRAFT_2092at 2116.933 kb on + strand, within EX28DRAFT_2092at 2117.079 kb on + strand, within EX28DRAFT_2092at 2117.080 kb on - strand, within EX28DRAFT_2092at 2117.080 kb on - strand, within EX28DRAFT_2092at 2117.098 kb on + strand, within EX28DRAFT_2092at 2117.183 kb on + strand, within EX28DRAFT_2092at 2117.184 kb on - strand, within EX28DRAFT_2092at 2117.362 kb on + strandat 2117.438 kb on + strand, within EX28DRAFT_2093at 2117.438 kb on + strand, within EX28DRAFT_2093at 2117.439 kb on - strand, within EX28DRAFT_2093at 2117.447 kb on + strand, within EX28DRAFT_2093at 2117.737 kb on + strand, within EX28DRAFT_2093at 2118.056 kb on - strandat 2118.056 kb on - strandat 2118.056 kb on - strandat 2118.063 kb on - strandat 2118.063 kb on - strandat 2118.063 kb on - strandat 2118.063 kb on - strandat 2118.068 kb on + strandat 2118.193 kb on + strandat 2118.205 kb on + strandat 2118.288 kb on + strand, within EX28DRAFT_2094at 2118.297 kb on + strand, within EX28DRAFT_2094at 2118.321 kb on + strand, within EX28DRAFT_2094at 2118.571 kb on + strand, within EX28DRAFT_2094at 2118.571 kb on + strand, within EX28DRAFT_2094at 2118.571 kb on + strand, within EX28DRAFT_2094at 2118.572 kb on - strand, within EX28DRAFT_2094

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,116,331 - EX28DRAFT_2092 0.31 +1.0
2,116,419 + EX28DRAFT_2092 0.37 +0.6
2,116,755 - EX28DRAFT_2092 0.60 +0.3
2,116,870 + EX28DRAFT_2092 0.68 +0.1
2,116,871 - EX28DRAFT_2092 0.68 -0.2
2,116,871 - EX28DRAFT_2092 0.68 +0.0
2,116,875 + EX28DRAFT_2092 0.68 -0.9
2,116,882 - EX28DRAFT_2092 0.69 -0.0
2,116,933 + EX28DRAFT_2092 0.72 +0.1
2,116,933 + EX28DRAFT_2092 0.72 +0.4
2,117,079 + EX28DRAFT_2092 0.82 +0.4
2,117,080 - EX28DRAFT_2092 0.82 +0.8
2,117,080 - EX28DRAFT_2092 0.82 +0.2
2,117,098 + EX28DRAFT_2092 0.83 +0.3
2,117,183 + EX28DRAFT_2092 0.89 -0.1
2,117,184 - EX28DRAFT_2092 0.89 -0.1
2,117,362 + -0.0
2,117,438 + EX28DRAFT_2093 0.16 +0.1
2,117,438 + EX28DRAFT_2093 0.16 -0.1
2,117,439 - EX28DRAFT_2093 0.16 +1.4
2,117,447 + EX28DRAFT_2093 0.17 +0.2
2,117,737 + EX28DRAFT_2093 0.58 +0.2
2,118,056 - +0.6
2,118,056 - +0.2
2,118,056 - +0.3
2,118,063 - +0.4
2,118,063 - -0.2
2,118,063 - +1.9
2,118,063 - +0.5
2,118,068 + -0.6
2,118,193 + -0.4
2,118,205 + +0.1
2,118,288 + EX28DRAFT_2094 0.12 -0.1
2,118,297 + EX28DRAFT_2094 0.13 -0.2
2,118,321 + EX28DRAFT_2094 0.15 -0.2
2,118,571 + EX28DRAFT_2094 0.37 -0.1
2,118,571 + EX28DRAFT_2094 0.37 +0.6
2,118,571 + EX28DRAFT_2094 0.37 +0.8
2,118,572 - EX28DRAFT_2094 0.37 +0.1

Or see this region's nucleotide sequence