Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2075

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2073 and EX28DRAFT_2074 overlap by 8 nucleotidesEX28DRAFT_2074 and EX28DRAFT_2075 overlap by 8 nucleotidesEX28DRAFT_2075 and EX28DRAFT_2076 overlap by 1 nucleotidesEX28DRAFT_2076 and EX28DRAFT_2077 are separated by 2 nucleotides EX28DRAFT_2073: EX28DRAFT_2073 - type II secretion system protein J, at 2,099,280 to 2,099,960 _2073 EX28DRAFT_2074: EX28DRAFT_2074 - type II secretion system protein I, at 2,099,953 to 2,100,336 _2074 EX28DRAFT_2075: EX28DRAFT_2075 - type II secretion system protein H, at 2,100,329 to 2,100,814 _2075 EX28DRAFT_2076: EX28DRAFT_2076 - type II secretion system protein G, at 2,100,814 to 2,101,263 _2076 EX28DRAFT_2077: EX28DRAFT_2077 - type II secretion system protein F, at 2,101,266 to 2,102,474 _2077 Position (kb) 2100 2101Strain fitness (log2 ratio) -1 0 1at 2099.424 kb on - strand, within EX28DRAFT_2073at 2099.424 kb on - strand, within EX28DRAFT_2073at 2099.768 kb on - strand, within EX28DRAFT_2073at 2099.791 kb on + strand, within EX28DRAFT_2073at 2099.792 kb on - strand, within EX28DRAFT_2073at 2099.916 kb on - strandat 2099.916 kb on - strandat 2099.916 kb on - strandat 2100.031 kb on + strand, within EX28DRAFT_2074at 2100.076 kb on - strand, within EX28DRAFT_2074at 2100.330 kb on + strandat 2100.555 kb on - strand, within EX28DRAFT_2075at 2100.703 kb on + strand, within EX28DRAFT_2075at 2100.762 kb on - strand, within EX28DRAFT_2075at 2100.861 kb on + strand, within EX28DRAFT_2076at 2100.864 kb on + strand, within EX28DRAFT_2076at 2101.077 kb on - strand, within EX28DRAFT_2076at 2101.077 kb on - strand, within EX28DRAFT_2076at 2101.197 kb on + strand, within EX28DRAFT_2076at 2101.277 kb on + strandat 2101.277 kb on + strandat 2101.284 kb on - strandat 2101.340 kb on + strandat 2101.341 kb on - strandat 2101.345 kb on - strandat 2101.347 kb on + strandat 2101.347 kb on + strandat 2101.382 kb on + strandat 2101.383 kb on - strandat 2101.474 kb on + strand, within EX28DRAFT_2077at 2101.577 kb on - strand, within EX28DRAFT_2077at 2101.606 kb on + strand, within EX28DRAFT_2077at 2101.606 kb on + strand, within EX28DRAFT_2077at 2101.607 kb on - strand, within EX28DRAFT_2077at 2101.607 kb on - strand, within EX28DRAFT_2077at 2101.607 kb on - strand, within EX28DRAFT_2077at 2101.607 kb on - strand, within EX28DRAFT_2077at 2101.647 kb on - strand, within EX28DRAFT_2077at 2101.656 kb on - strand, within EX28DRAFT_2077at 2101.663 kb on + strand, within EX28DRAFT_2077at 2101.664 kb on - strand, within EX28DRAFT_2077at 2101.664 kb on - strand, within EX28DRAFT_2077at 2101.664 kb on - strand, within EX28DRAFT_2077at 2101.729 kb on + strand, within EX28DRAFT_2077

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,099,424 - EX28DRAFT_2073 0.21 +0.3
2,099,424 - EX28DRAFT_2073 0.21 +0.7
2,099,768 - EX28DRAFT_2073 0.72 +0.6
2,099,791 + EX28DRAFT_2073 0.75 -0.5
2,099,792 - EX28DRAFT_2073 0.75 -0.1
2,099,916 - -0.1
2,099,916 - -1.7
2,099,916 - +0.2
2,100,031 + EX28DRAFT_2074 0.20 -0.3
2,100,076 - EX28DRAFT_2074 0.32 -1.5
2,100,330 + -0.1
2,100,555 - EX28DRAFT_2075 0.47 +0.2
2,100,703 + EX28DRAFT_2075 0.77 +0.3
2,100,762 - EX28DRAFT_2075 0.89 +0.2
2,100,861 + EX28DRAFT_2076 0.10 +0.1
2,100,864 + EX28DRAFT_2076 0.11 +0.0
2,101,077 - EX28DRAFT_2076 0.58 +0.1
2,101,077 - EX28DRAFT_2076 0.58 +0.1
2,101,197 + EX28DRAFT_2076 0.85 +0.1
2,101,277 + -0.1
2,101,277 + +0.5
2,101,284 - -0.1
2,101,340 + -0.1
2,101,341 - -0.1
2,101,345 - -0.5
2,101,347 + -0.1
2,101,347 + +0.0
2,101,382 + +0.2
2,101,383 - -0.7
2,101,474 + EX28DRAFT_2077 0.17 +0.3
2,101,577 - EX28DRAFT_2077 0.26 +0.2
2,101,606 + EX28DRAFT_2077 0.28 -0.7
2,101,606 + EX28DRAFT_2077 0.28 -0.0
2,101,607 - EX28DRAFT_2077 0.28 -0.2
2,101,607 - EX28DRAFT_2077 0.28 +0.2
2,101,607 - EX28DRAFT_2077 0.28 +0.8
2,101,607 - EX28DRAFT_2077 0.28 -0.2
2,101,647 - EX28DRAFT_2077 0.32 -0.2
2,101,656 - EX28DRAFT_2077 0.32 -0.1
2,101,663 + EX28DRAFT_2077 0.33 -0.1
2,101,664 - EX28DRAFT_2077 0.33 -0.6
2,101,664 - EX28DRAFT_2077 0.33 +0.4
2,101,664 - EX28DRAFT_2077 0.33 +0.1
2,101,729 + EX28DRAFT_2077 0.38 +1.2

Or see this region's nucleotide sequence