Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2058

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2057 and EX28DRAFT_2058 are separated by 178 nucleotidesEX28DRAFT_2058 and EX28DRAFT_2059 are separated by 144 nucleotides EX28DRAFT_2057: EX28DRAFT_2057 - MIP family channel proteins, at 2,079,697 to 2,080,392 _2057 EX28DRAFT_2058: EX28DRAFT_2058 - Predicted membrane protein, at 2,080,571 to 2,081,470 _2058 EX28DRAFT_2059: EX28DRAFT_2059 - hydroxylamine reductase, at 2,081,615 to 2,083,258 _2059 Position (kb) 2080 2081 2082Strain fitness (log2 ratio) -1 0 1 2at 2079.616 kb on - strandat 2079.652 kb on + strandat 2079.652 kb on + strandat 2079.652 kb on + strandat 2079.680 kb on - strandat 2079.729 kb on + strandat 2079.744 kb on - strandat 2079.836 kb on + strand, within EX28DRAFT_2057at 2079.836 kb on + strand, within EX28DRAFT_2057at 2079.837 kb on - strand, within EX28DRAFT_2057at 2079.865 kb on - strand, within EX28DRAFT_2057at 2079.899 kb on + strand, within EX28DRAFT_2057at 2079.899 kb on + strand, within EX28DRAFT_2057at 2079.905 kb on + strand, within EX28DRAFT_2057at 2079.938 kb on + strand, within EX28DRAFT_2057at 2079.938 kb on + strand, within EX28DRAFT_2057at 2079.946 kb on + strand, within EX28DRAFT_2057at 2079.946 kb on + strand, within EX28DRAFT_2057at 2079.973 kb on - strand, within EX28DRAFT_2057at 2079.975 kb on + strand, within EX28DRAFT_2057at 2079.975 kb on + strand, within EX28DRAFT_2057at 2079.975 kb on + strand, within EX28DRAFT_2057at 2079.975 kb on + strand, within EX28DRAFT_2057at 2079.994 kb on + strand, within EX28DRAFT_2057at 2080.227 kb on + strand, within EX28DRAFT_2057at 2080.526 kb on + strandat 2080.616 kb on + strandat 2080.654 kb on + strandat 2080.683 kb on - strand, within EX28DRAFT_2058at 2080.687 kb on + strand, within EX28DRAFT_2058at 2080.688 kb on - strand, within EX28DRAFT_2058at 2080.784 kb on - strand, within EX28DRAFT_2058at 2080.799 kb on - strand, within EX28DRAFT_2058at 2080.902 kb on + strand, within EX28DRAFT_2058at 2080.983 kb on - strand, within EX28DRAFT_2058at 2080.984 kb on + strand, within EX28DRAFT_2058at 2080.984 kb on + strand, within EX28DRAFT_2058at 2080.984 kb on + strand, within EX28DRAFT_2058at 2080.985 kb on - strand, within EX28DRAFT_2058at 2080.985 kb on - strand, within EX28DRAFT_2058at 2081.014 kb on + strand, within EX28DRAFT_2058at 2081.029 kb on + strand, within EX28DRAFT_2058at 2081.030 kb on - strand, within EX28DRAFT_2058at 2081.131 kb on + strand, within EX28DRAFT_2058at 2081.423 kb on - strandat 2081.427 kb on + strandat 2081.471 kb on + strandat 2081.614 kb on + strandat 2081.683 kb on + strandat 2081.684 kb on - strandat 2081.777 kb on + strandat 2081.782 kb on + strand, within EX28DRAFT_2059at 2081.783 kb on - strand, within EX28DRAFT_2059at 2081.796 kb on - strand, within EX28DRAFT_2059at 2081.845 kb on + strand, within EX28DRAFT_2059at 2081.888 kb on - strand, within EX28DRAFT_2059at 2081.888 kb on - strand, within EX28DRAFT_2059at 2082.074 kb on + strand, within EX28DRAFT_2059at 2082.098 kb on + strand, within EX28DRAFT_2059at 2082.099 kb on - strand, within EX28DRAFT_2059at 2082.144 kb on - strand, within EX28DRAFT_2059at 2082.194 kb on - strand, within EX28DRAFT_2059at 2082.369 kb on - strand, within EX28DRAFT_2059at 2082.369 kb on - strand, within EX28DRAFT_2059at 2082.369 kb on - strand, within EX28DRAFT_2059at 2082.410 kb on + strand, within EX28DRAFT_2059at 2082.411 kb on - strand, within EX28DRAFT_2059at 2082.458 kb on - strand, within EX28DRAFT_2059at 2082.463 kb on + strand, within EX28DRAFT_2059at 2082.464 kb on - strand, within EX28DRAFT_2059

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,079,616 - -0.1
2,079,652 + -0.5
2,079,652 + -0.0
2,079,652 + +0.4
2,079,680 - -0.2
2,079,729 + +0.3
2,079,744 - +0.2
2,079,836 + EX28DRAFT_2057 0.20 +0.6
2,079,836 + EX28DRAFT_2057 0.20 -0.2
2,079,837 - EX28DRAFT_2057 0.20 -0.0
2,079,865 - EX28DRAFT_2057 0.24 +0.4
2,079,899 + EX28DRAFT_2057 0.29 +0.0
2,079,899 + EX28DRAFT_2057 0.29 -0.2
2,079,905 + EX28DRAFT_2057 0.30 -0.1
2,079,938 + EX28DRAFT_2057 0.35 -0.2
2,079,938 + EX28DRAFT_2057 0.35 -0.6
2,079,946 + EX28DRAFT_2057 0.36 -0.1
2,079,946 + EX28DRAFT_2057 0.36 +0.7
2,079,973 - EX28DRAFT_2057 0.40 +0.3
2,079,975 + EX28DRAFT_2057 0.40 +0.2
2,079,975 + EX28DRAFT_2057 0.40 +0.1
2,079,975 + EX28DRAFT_2057 0.40 -0.1
2,079,975 + EX28DRAFT_2057 0.40 -0.0
2,079,994 + EX28DRAFT_2057 0.43 +0.8
2,080,227 + EX28DRAFT_2057 0.76 +0.6
2,080,526 + -0.7
2,080,616 + +0.4
2,080,654 + -0.1
2,080,683 - EX28DRAFT_2058 0.12 -0.2
2,080,687 + EX28DRAFT_2058 0.13 +0.1
2,080,688 - EX28DRAFT_2058 0.13 -0.1
2,080,784 - EX28DRAFT_2058 0.24 -0.5
2,080,799 - EX28DRAFT_2058 0.25 +0.2
2,080,902 + EX28DRAFT_2058 0.37 -0.2
2,080,983 - EX28DRAFT_2058 0.46 -0.0
2,080,984 + EX28DRAFT_2058 0.46 +0.1
2,080,984 + EX28DRAFT_2058 0.46 -0.3
2,080,984 + EX28DRAFT_2058 0.46 -0.4
2,080,985 - EX28DRAFT_2058 0.46 -0.3
2,080,985 - EX28DRAFT_2058 0.46 -0.6
2,081,014 + EX28DRAFT_2058 0.49 +0.2
2,081,029 + EX28DRAFT_2058 0.51 -0.1
2,081,030 - EX28DRAFT_2058 0.51 -0.2
2,081,131 + EX28DRAFT_2058 0.62 -0.7
2,081,423 - +0.8
2,081,427 + -0.4
2,081,471 + -0.5
2,081,614 + -0.4
2,081,683 + -0.4
2,081,684 - -1.0
2,081,777 + +0.2
2,081,782 + EX28DRAFT_2059 0.10 +0.8
2,081,783 - EX28DRAFT_2059 0.10 +0.4
2,081,796 - EX28DRAFT_2059 0.11 -0.2
2,081,845 + EX28DRAFT_2059 0.14 +0.2
2,081,888 - EX28DRAFT_2059 0.17 +0.4
2,081,888 - EX28DRAFT_2059 0.17 -0.2
2,082,074 + EX28DRAFT_2059 0.28 +0.1
2,082,098 + EX28DRAFT_2059 0.29 +0.1
2,082,099 - EX28DRAFT_2059 0.29 -0.4
2,082,144 - EX28DRAFT_2059 0.32 -0.3
2,082,194 - EX28DRAFT_2059 0.35 -0.4
2,082,369 - EX28DRAFT_2059 0.46 -0.4
2,082,369 - EX28DRAFT_2059 0.46 +1.8
2,082,369 - EX28DRAFT_2059 0.46 -0.1
2,082,410 + EX28DRAFT_2059 0.48 +0.7
2,082,411 - EX28DRAFT_2059 0.48 -0.0
2,082,458 - EX28DRAFT_2059 0.51 -0.7
2,082,463 + EX28DRAFT_2059 0.52 -0.2
2,082,464 - EX28DRAFT_2059 0.52 -0.6

Or see this region's nucleotide sequence