Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1869 and EX28DRAFT_1870 are separated by 74 nucleotides EX28DRAFT_1870 and EX28DRAFT_1871 are separated by 275 nucleotides EX28DRAFT_1871 and EX28DRAFT_1872 are separated by 116 nucleotides EX28DRAFT_1872 and EX28DRAFT_1873 are separated by 59 nucleotides EX28DRAFT_1873 and EX28DRAFT_1874 are separated by 150 nucleotides EX28DRAFT_1874 and EX28DRAFT_1875 are separated by 1 nucleotides
EX28DRAFT_1869: EX28DRAFT_1869 - dihydroorotase (EC 3.5.2.3), at 1,883,013 to 1,884,059
_1869
EX28DRAFT_1870: EX28DRAFT_1870 - DinI-like family, at 1,884,134 to 1,884,379
_1870
EX28DRAFT_1871: EX28DRAFT_1871 - BssS protein family, at 1,884,655 to 1,884,909
_1871
EX28DRAFT_1872: EX28DRAFT_1872 - Glycine/D-amino acid oxidases (deaminating), at 1,885,026 to 1,886,144
_1872
EX28DRAFT_1873: EX28DRAFT_1873 - Protein of unknown function (DUF2770), at 1,886,204 to 1,886,317
_1873
EX28DRAFT_1874: EX28DRAFT_1874 - Cytochrome B561, at 1,886,468 to 1,887,091
_1874
EX28DRAFT_1875: EX28DRAFT_1875 - Uncharacterized conserved protein, at 1,887,093 to 1,887,671
_1875
Position (kb)
1885
1886
1887 Strain fitness (log2 ratio)
-1
0
1
2 at 1884.049 kb on + strand at 1884.133 kb on + strand at 1884.133 kb on + strand at 1884.134 kb on - strand at 1884.310 kb on + strand, within EX28DRAFT_1870 at 1884.310 kb on + strand, within EX28DRAFT_1870 at 1884.311 kb on - strand, within EX28DRAFT_1870 at 1884.378 kb on - strand at 1884.456 kb on - strand at 1884.498 kb on + strand at 1884.498 kb on + strand at 1884.499 kb on - strand at 1884.547 kb on - strand at 1884.570 kb on + strand at 1884.570 kb on + strand at 1884.577 kb on + strand at 1884.578 kb on - strand at 1884.642 kb on + strand at 1884.651 kb on + strand at 1884.653 kb on + strand at 1884.711 kb on + strand, within EX28DRAFT_1871 at 1884.716 kb on + strand, within EX28DRAFT_1871 at 1884.716 kb on + strand, within EX28DRAFT_1871 at 1884.716 kb on + strand, within EX28DRAFT_1871 at 1884.716 kb on + strand, within EX28DRAFT_1871 at 1884.717 kb on - strand, within EX28DRAFT_1871 at 1884.720 kb on + strand, within EX28DRAFT_1871 at 1884.724 kb on + strand, within EX28DRAFT_1871 at 1884.724 kb on + strand, within EX28DRAFT_1871 at 1884.856 kb on - strand, within EX28DRAFT_1871 at 1884.881 kb on - strand, within EX28DRAFT_1871 at 1884.897 kb on + strand at 1884.898 kb on - strand at 1884.907 kb on + strand at 1884.913 kb on + strand at 1884.913 kb on + strand at 1884.914 kb on - strand at 1884.914 kb on - strand at 1884.953 kb on + strand at 1884.953 kb on + strand at 1884.953 kb on + strand at 1884.954 kb on - strand at 1884.986 kb on + strand at 1884.990 kb on + strand at 1884.991 kb on - strand at 1884.991 kb on - strand at 1884.999 kb on - strand at 1885.025 kb on + strand at 1885.026 kb on - strand at 1885.026 kb on - strand at 1885.026 kb on - strand at 1885.032 kb on + strand at 1885.040 kb on - strand at 1885.047 kb on - strand at 1885.203 kb on + strand, within EX28DRAFT_1872 at 1885.203 kb on + strand, within EX28DRAFT_1872 at 1885.207 kb on + strand, within EX28DRAFT_1872 at 1885.208 kb on - strand, within EX28DRAFT_1872 at 1885.208 kb on - strand, within EX28DRAFT_1872 at 1885.425 kb on + strand, within EX28DRAFT_1872 at 1885.426 kb on - strand, within EX28DRAFT_1872 at 1885.847 kb on + strand, within EX28DRAFT_1872 at 1885.946 kb on + strand, within EX28DRAFT_1872 at 1885.947 kb on - strand, within EX28DRAFT_1872 at 1885.950 kb on + strand, within EX28DRAFT_1872 at 1885.986 kb on - strand, within EX28DRAFT_1872 at 1886.043 kb on - strand at 1886.259 kb on - strand, within EX28DRAFT_1873 at 1886.261 kb on - strand, within EX28DRAFT_1873 at 1886.261 kb on - strand, within EX28DRAFT_1873 at 1886.373 kb on + strand at 1886.396 kb on - strand at 1886.437 kb on + strand at 1886.506 kb on + strand at 1886.562 kb on + strand, within EX28DRAFT_1874 at 1886.569 kb on - strand, within EX28DRAFT_1874 at 1886.584 kb on - strand, within EX28DRAFT_1874 at 1886.643 kb on - strand, within EX28DRAFT_1874 at 1886.645 kb on + strand, within EX28DRAFT_1874 at 1886.677 kb on - strand, within EX28DRAFT_1874 at 1886.680 kb on + strand, within EX28DRAFT_1874 at 1886.681 kb on - strand, within EX28DRAFT_1874 at 1886.681 kb on - strand, within EX28DRAFT_1874 at 1886.817 kb on - strand, within EX28DRAFT_1874 at 1886.854 kb on + strand, within EX28DRAFT_1874 at 1887.035 kb on - strand at 1887.048 kb on + strand at 1887.131 kb on - strand at 1887.131 kb on - strand at 1887.133 kb on + strand at 1887.133 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,884,049 + -0.1 1,884,133 + +0.5 1,884,133 + -0.1 1,884,134 - -0.0 1,884,310 + EX28DRAFT_1870 0.72 -0.4 1,884,310 + EX28DRAFT_1870 0.72 -0.4 1,884,311 - EX28DRAFT_1870 0.72 +1.2 1,884,378 - -0.0 1,884,456 - -0.1 1,884,498 + +0.0 1,884,498 + -0.7 1,884,499 - +0.6 1,884,547 - +0.8 1,884,570 + +0.3 1,884,570 + +1.3 1,884,577 + -0.2 1,884,578 - -0.9 1,884,642 + -0.0 1,884,651 + +0.1 1,884,653 + -0.3 1,884,711 + EX28DRAFT_1871 0.22 -0.2 1,884,716 + EX28DRAFT_1871 0.24 -0.2 1,884,716 + EX28DRAFT_1871 0.24 +0.8 1,884,716 + EX28DRAFT_1871 0.24 +0.1 1,884,716 + EX28DRAFT_1871 0.24 -1.6 1,884,717 - EX28DRAFT_1871 0.24 -0.3 1,884,720 + EX28DRAFT_1871 0.25 -0.3 1,884,724 + EX28DRAFT_1871 0.27 -0.5 1,884,724 + EX28DRAFT_1871 0.27 -0.5 1,884,856 - EX28DRAFT_1871 0.79 +0.2 1,884,881 - EX28DRAFT_1871 0.89 +0.8 1,884,897 + +0.4 1,884,898 - -0.1 1,884,907 + -0.1 1,884,913 + -0.2 1,884,913 + +0.1 1,884,914 - -0.3 1,884,914 - +1.7 1,884,953 + +0.2 1,884,953 + +0.2 1,884,953 + -0.3 1,884,954 - +0.0 1,884,986 + -1.7 1,884,990 + +1.5 1,884,991 - -0.7 1,884,991 - +0.1 1,884,999 - -0.2 1,885,025 + -0.4 1,885,026 - +0.5 1,885,026 - -0.2 1,885,026 - +0.6 1,885,032 + +0.3 1,885,040 - +1.5 1,885,047 - +0.0 1,885,203 + EX28DRAFT_1872 0.16 +0.1 1,885,203 + EX28DRAFT_1872 0.16 +0.0 1,885,207 + EX28DRAFT_1872 0.16 -0.1 1,885,208 - EX28DRAFT_1872 0.16 -1.0 1,885,208 - EX28DRAFT_1872 0.16 +0.3 1,885,425 + EX28DRAFT_1872 0.36 +0.7 1,885,426 - EX28DRAFT_1872 0.36 +0.6 1,885,847 + EX28DRAFT_1872 0.73 -0.3 1,885,946 + EX28DRAFT_1872 0.82 -1.6 1,885,947 - EX28DRAFT_1872 0.82 +0.7 1,885,950 + EX28DRAFT_1872 0.83 +0.3 1,885,986 - EX28DRAFT_1872 0.86 +1.2 1,886,043 - -0.1 1,886,259 - EX28DRAFT_1873 0.48 +0.5 1,886,261 - EX28DRAFT_1873 0.50 +0.7 1,886,261 - EX28DRAFT_1873 0.50 -0.1 1,886,373 + +0.2 1,886,396 - -0.6 1,886,437 + -0.4 1,886,506 + -0.4 1,886,562 + EX28DRAFT_1874 0.15 +0.1 1,886,569 - EX28DRAFT_1874 0.16 -0.8 1,886,584 - EX28DRAFT_1874 0.19 +0.7 1,886,643 - EX28DRAFT_1874 0.28 +0.0 1,886,645 + EX28DRAFT_1874 0.28 +0.8 1,886,677 - EX28DRAFT_1874 0.33 +0.6 1,886,680 + EX28DRAFT_1874 0.34 -0.3 1,886,681 - EX28DRAFT_1874 0.34 -0.3 1,886,681 - EX28DRAFT_1874 0.34 +0.1 1,886,817 - EX28DRAFT_1874 0.56 +0.1 1,886,854 + EX28DRAFT_1874 0.62 -0.6 1,887,035 - +0.8 1,887,048 + +0.1 1,887,131 - +0.3 1,887,131 - -0.7 1,887,133 + +0.2 1,887,133 + +1.8
Or see this region's nucleotide sequence