Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1872

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1869 and EX28DRAFT_1870 are separated by 74 nucleotidesEX28DRAFT_1870 and EX28DRAFT_1871 are separated by 275 nucleotidesEX28DRAFT_1871 and EX28DRAFT_1872 are separated by 116 nucleotidesEX28DRAFT_1872 and EX28DRAFT_1873 are separated by 59 nucleotidesEX28DRAFT_1873 and EX28DRAFT_1874 are separated by 150 nucleotidesEX28DRAFT_1874 and EX28DRAFT_1875 are separated by 1 nucleotides EX28DRAFT_1869: EX28DRAFT_1869 - dihydroorotase (EC 3.5.2.3), at 1,883,013 to 1,884,059 _1869 EX28DRAFT_1870: EX28DRAFT_1870 - DinI-like family, at 1,884,134 to 1,884,379 _1870 EX28DRAFT_1871: EX28DRAFT_1871 - BssS protein family, at 1,884,655 to 1,884,909 _1871 EX28DRAFT_1872: EX28DRAFT_1872 - Glycine/D-amino acid oxidases (deaminating), at 1,885,026 to 1,886,144 _1872 EX28DRAFT_1873: EX28DRAFT_1873 - Protein of unknown function (DUF2770), at 1,886,204 to 1,886,317 _1873 EX28DRAFT_1874: EX28DRAFT_1874 - Cytochrome B561, at 1,886,468 to 1,887,091 _1874 EX28DRAFT_1875: EX28DRAFT_1875 - Uncharacterized conserved protein, at 1,887,093 to 1,887,671 _1875 Position (kb) 1885 1886 1887Strain fitness (log2 ratio) -1 0 1 2at 1884.049 kb on + strandat 1884.133 kb on + strandat 1884.133 kb on + strandat 1884.134 kb on - strandat 1884.310 kb on + strand, within EX28DRAFT_1870at 1884.310 kb on + strand, within EX28DRAFT_1870at 1884.311 kb on - strand, within EX28DRAFT_1870at 1884.378 kb on - strandat 1884.456 kb on - strandat 1884.498 kb on + strandat 1884.498 kb on + strandat 1884.499 kb on - strandat 1884.547 kb on - strandat 1884.570 kb on + strandat 1884.570 kb on + strandat 1884.577 kb on + strandat 1884.578 kb on - strandat 1884.642 kb on + strandat 1884.651 kb on + strandat 1884.653 kb on + strandat 1884.711 kb on + strand, within EX28DRAFT_1871at 1884.716 kb on + strand, within EX28DRAFT_1871at 1884.716 kb on + strand, within EX28DRAFT_1871at 1884.716 kb on + strand, within EX28DRAFT_1871at 1884.716 kb on + strand, within EX28DRAFT_1871at 1884.717 kb on - strand, within EX28DRAFT_1871at 1884.720 kb on + strand, within EX28DRAFT_1871at 1884.724 kb on + strand, within EX28DRAFT_1871at 1884.724 kb on + strand, within EX28DRAFT_1871at 1884.856 kb on - strand, within EX28DRAFT_1871at 1884.881 kb on - strand, within EX28DRAFT_1871at 1884.897 kb on + strandat 1884.898 kb on - strandat 1884.907 kb on + strandat 1884.913 kb on + strandat 1884.913 kb on + strandat 1884.914 kb on - strandat 1884.914 kb on - strandat 1884.953 kb on + strandat 1884.953 kb on + strandat 1884.953 kb on + strandat 1884.954 kb on - strandat 1884.986 kb on + strandat 1884.990 kb on + strandat 1884.991 kb on - strandat 1884.991 kb on - strandat 1884.999 kb on - strandat 1885.025 kb on + strandat 1885.026 kb on - strandat 1885.026 kb on - strandat 1885.026 kb on - strandat 1885.032 kb on + strandat 1885.040 kb on - strandat 1885.047 kb on - strandat 1885.203 kb on + strand, within EX28DRAFT_1872at 1885.203 kb on + strand, within EX28DRAFT_1872at 1885.207 kb on + strand, within EX28DRAFT_1872at 1885.208 kb on - strand, within EX28DRAFT_1872at 1885.208 kb on - strand, within EX28DRAFT_1872at 1885.425 kb on + strand, within EX28DRAFT_1872at 1885.426 kb on - strand, within EX28DRAFT_1872at 1885.847 kb on + strand, within EX28DRAFT_1872at 1885.946 kb on + strand, within EX28DRAFT_1872at 1885.947 kb on - strand, within EX28DRAFT_1872at 1885.950 kb on + strand, within EX28DRAFT_1872at 1885.986 kb on - strand, within EX28DRAFT_1872at 1886.043 kb on - strandat 1886.259 kb on - strand, within EX28DRAFT_1873at 1886.261 kb on - strand, within EX28DRAFT_1873at 1886.261 kb on - strand, within EX28DRAFT_1873at 1886.373 kb on + strandat 1886.396 kb on - strandat 1886.437 kb on + strandat 1886.506 kb on + strandat 1886.562 kb on + strand, within EX28DRAFT_1874at 1886.569 kb on - strand, within EX28DRAFT_1874at 1886.584 kb on - strand, within EX28DRAFT_1874at 1886.643 kb on - strand, within EX28DRAFT_1874at 1886.645 kb on + strand, within EX28DRAFT_1874at 1886.677 kb on - strand, within EX28DRAFT_1874at 1886.680 kb on + strand, within EX28DRAFT_1874at 1886.681 kb on - strand, within EX28DRAFT_1874at 1886.681 kb on - strand, within EX28DRAFT_1874at 1886.817 kb on - strand, within EX28DRAFT_1874at 1886.854 kb on + strand, within EX28DRAFT_1874at 1887.035 kb on - strandat 1887.048 kb on + strandat 1887.131 kb on - strandat 1887.131 kb on - strandat 1887.133 kb on + strandat 1887.133 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,884,049 + -0.1
1,884,133 + +0.5
1,884,133 + -0.1
1,884,134 - -0.0
1,884,310 + EX28DRAFT_1870 0.72 -0.4
1,884,310 + EX28DRAFT_1870 0.72 -0.4
1,884,311 - EX28DRAFT_1870 0.72 +1.2
1,884,378 - -0.0
1,884,456 - -0.1
1,884,498 + +0.0
1,884,498 + -0.7
1,884,499 - +0.6
1,884,547 - +0.8
1,884,570 + +0.3
1,884,570 + +1.3
1,884,577 + -0.2
1,884,578 - -0.9
1,884,642 + -0.0
1,884,651 + +0.1
1,884,653 + -0.3
1,884,711 + EX28DRAFT_1871 0.22 -0.2
1,884,716 + EX28DRAFT_1871 0.24 -0.2
1,884,716 + EX28DRAFT_1871 0.24 +0.8
1,884,716 + EX28DRAFT_1871 0.24 +0.1
1,884,716 + EX28DRAFT_1871 0.24 -1.6
1,884,717 - EX28DRAFT_1871 0.24 -0.3
1,884,720 + EX28DRAFT_1871 0.25 -0.3
1,884,724 + EX28DRAFT_1871 0.27 -0.5
1,884,724 + EX28DRAFT_1871 0.27 -0.5
1,884,856 - EX28DRAFT_1871 0.79 +0.2
1,884,881 - EX28DRAFT_1871 0.89 +0.8
1,884,897 + +0.4
1,884,898 - -0.1
1,884,907 + -0.1
1,884,913 + -0.2
1,884,913 + +0.1
1,884,914 - -0.3
1,884,914 - +1.7
1,884,953 + +0.2
1,884,953 + +0.2
1,884,953 + -0.3
1,884,954 - +0.0
1,884,986 + -1.7
1,884,990 + +1.5
1,884,991 - -0.7
1,884,991 - +0.1
1,884,999 - -0.2
1,885,025 + -0.4
1,885,026 - +0.5
1,885,026 - -0.2
1,885,026 - +0.6
1,885,032 + +0.3
1,885,040 - +1.5
1,885,047 - +0.0
1,885,203 + EX28DRAFT_1872 0.16 +0.1
1,885,203 + EX28DRAFT_1872 0.16 +0.0
1,885,207 + EX28DRAFT_1872 0.16 -0.1
1,885,208 - EX28DRAFT_1872 0.16 -1.0
1,885,208 - EX28DRAFT_1872 0.16 +0.3
1,885,425 + EX28DRAFT_1872 0.36 +0.7
1,885,426 - EX28DRAFT_1872 0.36 +0.6
1,885,847 + EX28DRAFT_1872 0.73 -0.3
1,885,946 + EX28DRAFT_1872 0.82 -1.6
1,885,947 - EX28DRAFT_1872 0.82 +0.7
1,885,950 + EX28DRAFT_1872 0.83 +0.3
1,885,986 - EX28DRAFT_1872 0.86 +1.2
1,886,043 - -0.1
1,886,259 - EX28DRAFT_1873 0.48 +0.5
1,886,261 - EX28DRAFT_1873 0.50 +0.7
1,886,261 - EX28DRAFT_1873 0.50 -0.1
1,886,373 + +0.2
1,886,396 - -0.6
1,886,437 + -0.4
1,886,506 + -0.4
1,886,562 + EX28DRAFT_1874 0.15 +0.1
1,886,569 - EX28DRAFT_1874 0.16 -0.8
1,886,584 - EX28DRAFT_1874 0.19 +0.7
1,886,643 - EX28DRAFT_1874 0.28 +0.0
1,886,645 + EX28DRAFT_1874 0.28 +0.8
1,886,677 - EX28DRAFT_1874 0.33 +0.6
1,886,680 + EX28DRAFT_1874 0.34 -0.3
1,886,681 - EX28DRAFT_1874 0.34 -0.3
1,886,681 - EX28DRAFT_1874 0.34 +0.1
1,886,817 - EX28DRAFT_1874 0.56 +0.1
1,886,854 + EX28DRAFT_1874 0.62 -0.6
1,887,035 - +0.8
1,887,048 + +0.1
1,887,131 - +0.3
1,887,131 - -0.7
1,887,133 + +0.2
1,887,133 + +1.8

Or see this region's nucleotide sequence