Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1845

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1844 and EX28DRAFT_1845 are separated by 212 nucleotidesEX28DRAFT_1845 and EX28DRAFT_1846 are separated by 24 nucleotides EX28DRAFT_1844: EX28DRAFT_1844 - pseudouridine synthase, RluA family, at 1,858,299 to 1,859,246 _1844 EX28DRAFT_1845: EX28DRAFT_1845 - RNA, at 1,859,459 to 1,859,794 _1845 EX28DRAFT_1846: EX28DRAFT_1846 - ribonuclease, Rne/Rng family, at 1,859,819 to 1,862,947 _1846 Position (kb) 1859 1860Strain fitness (log2 ratio) -1 0 1at 1858.632 kb on - strand, within EX28DRAFT_1844at 1859.045 kb on + strand, within EX28DRAFT_1844at 1859.263 kb on + strandat 1859.300 kb on + strandat 1859.300 kb on + strandat 1859.301 kb on - strandat 1859.301 kb on - strandat 1859.301 kb on - strandat 1859.301 kb on - strandat 1859.302 kb on + strandat 1859.303 kb on - strandat 1859.306 kb on + strandat 1859.353 kb on + strandat 1859.404 kb on + strandat 1859.484 kb on + strandat 1859.549 kb on + strand, within EX28DRAFT_1845at 1859.697 kb on + strand, within EX28DRAFT_1845

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,858,632 - EX28DRAFT_1844 0.35 -0.0
1,859,045 + EX28DRAFT_1844 0.79 -0.5
1,859,263 + -0.2
1,859,300 + -0.2
1,859,300 + -0.3
1,859,301 - -0.2
1,859,301 - -0.0
1,859,301 - -0.2
1,859,301 - -0.1
1,859,302 + +1.7
1,859,303 - +0.3
1,859,306 + +0.7
1,859,353 + +0.1
1,859,404 + +0.1
1,859,484 + -0.9
1,859,549 + EX28DRAFT_1845 0.27 -0.5
1,859,697 + EX28DRAFT_1845 0.71 -0.7

Or see this region's nucleotide sequence