Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1834

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1832 and EX28DRAFT_1833 are separated by 2 nucleotidesEX28DRAFT_1833 and EX28DRAFT_1834 are separated by 120 nucleotidesEX28DRAFT_1834 and EX28DRAFT_1835 are separated by 91 nucleotidesEX28DRAFT_1835 and EX28DRAFT_1836 are separated by 154 nucleotides EX28DRAFT_1832: EX28DRAFT_1832 - conserved hypothetical protein, YceG family, at 1,849,350 to 1,850,372 _1832 EX28DRAFT_1833: EX28DRAFT_1833 - aminodeoxychorismate lyase, at 1,850,375 to 1,851,184 _1833 EX28DRAFT_1834: EX28DRAFT_1834 - beta-ketoacyl-acyl-carrier-protein synthase II, at 1,851,305 to 1,852,546 _1834 EX28DRAFT_1835: EX28DRAFT_1835 - acyl carrier protein, at 1,852,638 to 1,852,874 _1835 EX28DRAFT_1836: EX28DRAFT_1836 - 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100), at 1,853,029 to 1,853,763 _1836 Position (kb) 1851 1852 1853Strain fitness (log2 ratio) -1 0 1at 1850.376 kb on + strandat 1850.377 kb on - strandat 1850.394 kb on - strandat 1850.460 kb on - strand, within EX28DRAFT_1833at 1850.528 kb on - strand, within EX28DRAFT_1833at 1850.595 kb on - strand, within EX28DRAFT_1833at 1850.648 kb on + strand, within EX28DRAFT_1833at 1850.731 kb on + strand, within EX28DRAFT_1833at 1850.731 kb on + strand, within EX28DRAFT_1833at 1850.732 kb on - strand, within EX28DRAFT_1833at 1850.767 kb on + strand, within EX28DRAFT_1833at 1850.767 kb on + strand, within EX28DRAFT_1833at 1851.001 kb on + strand, within EX28DRAFT_1833at 1851.002 kb on - strand, within EX28DRAFT_1833at 1851.013 kb on + strand, within EX28DRAFT_1833at 1851.026 kb on + strand, within EX28DRAFT_1833at 1851.027 kb on - strand, within EX28DRAFT_1833at 1851.209 kb on + strandat 1851.254 kb on + strandat 1851.282 kb on + strandat 1851.359 kb on - strandat 1851.359 kb on - strandat 1851.359 kb on - strandat 1851.490 kb on - strand, within EX28DRAFT_1834at 1851.668 kb on - strand, within EX28DRAFT_1834at 1851.745 kb on - strand, within EX28DRAFT_1834at 1852.039 kb on + strand, within EX28DRAFT_1834at 1852.040 kb on - strand, within EX28DRAFT_1834at 1852.040 kb on - strand, within EX28DRAFT_1834at 1852.190 kb on - strand, within EX28DRAFT_1834at 1852.388 kb on + strand, within EX28DRAFT_1834

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,850,376 + +0.0
1,850,377 - +0.7
1,850,394 - -1.2
1,850,460 - EX28DRAFT_1833 0.10 -0.3
1,850,528 - EX28DRAFT_1833 0.19 -0.3
1,850,595 - EX28DRAFT_1833 0.27 -0.1
1,850,648 + EX28DRAFT_1833 0.34 -0.1
1,850,731 + EX28DRAFT_1833 0.44 +0.5
1,850,731 + EX28DRAFT_1833 0.44 +0.2
1,850,732 - EX28DRAFT_1833 0.44 +0.1
1,850,767 + EX28DRAFT_1833 0.48 -0.5
1,850,767 + EX28DRAFT_1833 0.48 -0.4
1,851,001 + EX28DRAFT_1833 0.77 -0.4
1,851,002 - EX28DRAFT_1833 0.77 -0.0
1,851,013 + EX28DRAFT_1833 0.79 -0.3
1,851,026 + EX28DRAFT_1833 0.80 +0.3
1,851,027 - EX28DRAFT_1833 0.80 -0.1
1,851,209 + +0.4
1,851,254 + -0.2
1,851,282 + +0.7
1,851,359 - -1.3
1,851,359 - -0.7
1,851,359 - -0.6
1,851,490 - EX28DRAFT_1834 0.15 -1.2
1,851,668 - EX28DRAFT_1834 0.29 -0.6
1,851,745 - EX28DRAFT_1834 0.35 +0.9
1,852,039 + EX28DRAFT_1834 0.59 -1.3
1,852,040 - EX28DRAFT_1834 0.59 -0.8
1,852,040 - EX28DRAFT_1834 0.59 -0.7
1,852,190 - EX28DRAFT_1834 0.71 -0.7
1,852,388 + EX28DRAFT_1834 0.87 +0.7

Or see this region's nucleotide sequence