Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1786

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1783 and EX28DRAFT_1784 are separated by 0 nucleotidesEX28DRAFT_1784 and EX28DRAFT_1785 are separated by 80 nucleotidesEX28DRAFT_1785 and EX28DRAFT_1786 are separated by 268 nucleotidesEX28DRAFT_1786 and EX28DRAFT_1787 are separated by 274 nucleotidesEX28DRAFT_1787 and EX28DRAFT_1788 are separated by 216 nucleotidesEX28DRAFT_1788 and EX28DRAFT_1789 are separated by 5 nucleotides EX28DRAFT_1783: EX28DRAFT_1783 - Uncharacterized conserved protein, at 1,799,112 to 1,799,456 _1783 EX28DRAFT_1784: EX28DRAFT_1784 - hypothetical protein, at 1,799,457 to 1,799,762 _1784 EX28DRAFT_1785: EX28DRAFT_1785 - Putative hemolysin, at 1,799,843 to 1,800,097 _1785 EX28DRAFT_1786: EX28DRAFT_1786 - diguanylate cyclase (GGDEF) domain, at 1,800,366 to 1,801,436 _1786 EX28DRAFT_1787: EX28DRAFT_1787 - Predicted membrane protein, at 1,801,711 to 1,801,959 _1787 EX28DRAFT_1788: EX28DRAFT_1788 - RNA, at 1,802,176 to 1,802,239 _1788 EX28DRAFT_1789: EX28DRAFT_1789 - diguanylate cyclase (GGDEF) domain, at 1,802,245 to 1,803,717 _1789 Position (kb) 1800 1801 1802Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1799.392 kb on - strand, within EX28DRAFT_1783at 1799.428 kb on + strandat 1799.429 kb on - strandat 1799.688 kb on - strand, within EX28DRAFT_1784at 1799.750 kb on + strandat 1799.750 kb on + strandat 1799.762 kb on + strandat 1799.763 kb on - strandat 1799.763 kb on - strandat 1799.763 kb on - strandat 1799.803 kb on + strandat 1799.809 kb on + strandat 1799.810 kb on - strandat 1799.833 kb on + strandat 1799.835 kb on + strandat 1799.835 kb on + strandat 1799.835 kb on + strandat 1799.835 kb on + strandat 1799.835 kb on + strandat 1799.835 kb on + strandat 1799.835 kb on + strandat 1799.836 kb on - strandat 1799.836 kb on - strandat 1799.836 kb on - strandat 1799.836 kb on - strandat 1799.836 kb on - strandat 1799.927 kb on + strand, within EX28DRAFT_1785at 1800.001 kb on + strand, within EX28DRAFT_1785at 1800.128 kb on + strandat 1800.192 kb on + strandat 1800.192 kb on + strandat 1800.192 kb on + strandat 1800.194 kb on + strandat 1800.194 kb on + strandat 1800.194 kb on + strandat 1800.306 kb on + strandat 1800.307 kb on - strandat 1800.362 kb on + strandat 1800.362 kb on + strandat 1800.362 kb on + strandat 1800.402 kb on + strandat 1800.403 kb on - strandat 1800.419 kb on + strandat 1800.420 kb on - strandat 1800.526 kb on - strand, within EX28DRAFT_1786at 1800.538 kb on + strand, within EX28DRAFT_1786at 1800.538 kb on + strand, within EX28DRAFT_1786at 1800.538 kb on + strand, within EX28DRAFT_1786at 1800.538 kb on + strand, within EX28DRAFT_1786at 1800.538 kb on + strand, within EX28DRAFT_1786at 1800.539 kb on - strand, within EX28DRAFT_1786at 1800.539 kb on - strand, within EX28DRAFT_1786at 1800.539 kb on - strand, within EX28DRAFT_1786at 1800.539 kb on - strand, within EX28DRAFT_1786at 1800.563 kb on + strand, within EX28DRAFT_1786at 1800.570 kb on + strand, within EX28DRAFT_1786at 1800.665 kb on - strand, within EX28DRAFT_1786at 1800.732 kb on + strand, within EX28DRAFT_1786at 1800.732 kb on + strand, within EX28DRAFT_1786at 1801.019 kb on + strand, within EX28DRAFT_1786at 1801.020 kb on - strand, within EX28DRAFT_1786at 1801.149 kb on - strand, within EX28DRAFT_1786at 1801.259 kb on + strand, within EX28DRAFT_1786at 1801.259 kb on + strand, within EX28DRAFT_1786at 1801.364 kb on - strandat 1801.386 kb on + strandat 1801.387 kb on - strandat 1801.394 kb on + strandat 1801.578 kb on + strandat 1801.601 kb on + strandat 1801.666 kb on + strandat 1801.819 kb on - strand, within EX28DRAFT_1787at 1801.819 kb on - strand, within EX28DRAFT_1787at 1801.858 kb on + strand, within EX28DRAFT_1787at 1801.859 kb on - strand, within EX28DRAFT_1787at 1801.938 kb on + strandat 1801.959 kb on + strandat 1801.975 kb on - strandat 1801.989 kb on + strandat 1801.989 kb on + strandat 1802.012 kb on + strandat 1802.249 kb on - strandat 1802.317 kb on - strandat 1802.323 kb on - strandat 1802.323 kb on - strandat 1802.323 kb on - strandat 1802.401 kb on - strand, within EX28DRAFT_1789

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,799,392 - EX28DRAFT_1783 0.81 +0.7
1,799,428 + +0.6
1,799,429 - -0.1
1,799,688 - EX28DRAFT_1784 0.75 -0.4
1,799,750 + +0.1
1,799,750 + +0.6
1,799,762 + +0.7
1,799,763 - +0.1
1,799,763 - -0.4
1,799,763 - -0.7
1,799,803 + +0.4
1,799,809 + +0.2
1,799,810 - -0.1
1,799,833 + +0.0
1,799,835 + -0.0
1,799,835 + -0.7
1,799,835 + -1.0
1,799,835 + +0.3
1,799,835 + +0.3
1,799,835 + -0.7
1,799,835 + -0.6
1,799,836 - -0.2
1,799,836 - -0.6
1,799,836 - +0.3
1,799,836 - -0.3
1,799,836 - -0.4
1,799,927 + EX28DRAFT_1785 0.33 -0.2
1,800,001 + EX28DRAFT_1785 0.62 +0.1
1,800,128 + +0.1
1,800,192 + +0.3
1,800,192 + +0.1
1,800,192 + -0.4
1,800,194 + +0.3
1,800,194 + +0.0
1,800,194 + +0.4
1,800,306 + -0.8
1,800,307 - -0.3
1,800,362 + -0.2
1,800,362 + +1.3
1,800,362 + -0.5
1,800,402 + -0.2
1,800,403 - -0.6
1,800,419 + +0.1
1,800,420 - -0.1
1,800,526 - EX28DRAFT_1786 0.15 +0.1
1,800,538 + EX28DRAFT_1786 0.16 +2.9
1,800,538 + EX28DRAFT_1786 0.16 +0.6
1,800,538 + EX28DRAFT_1786 0.16 -0.5
1,800,538 + EX28DRAFT_1786 0.16 +0.4
1,800,538 + EX28DRAFT_1786 0.16 +0.7
1,800,539 - EX28DRAFT_1786 0.16 +0.3
1,800,539 - EX28DRAFT_1786 0.16 +0.1
1,800,539 - EX28DRAFT_1786 0.16 +0.5
1,800,539 - EX28DRAFT_1786 0.16 +0.0
1,800,563 + EX28DRAFT_1786 0.18 +2.2
1,800,570 + EX28DRAFT_1786 0.19 +0.3
1,800,665 - EX28DRAFT_1786 0.28 +0.1
1,800,732 + EX28DRAFT_1786 0.34 +0.4
1,800,732 + EX28DRAFT_1786 0.34 -0.3
1,801,019 + EX28DRAFT_1786 0.61 -0.0
1,801,020 - EX28DRAFT_1786 0.61 +0.1
1,801,149 - EX28DRAFT_1786 0.73 +0.3
1,801,259 + EX28DRAFT_1786 0.83 -0.1
1,801,259 + EX28DRAFT_1786 0.83 +0.0
1,801,364 - +0.4
1,801,386 + -1.3
1,801,387 - +0.4
1,801,394 + +0.7
1,801,578 + +0.5
1,801,601 + -0.2
1,801,666 + -0.0
1,801,819 - EX28DRAFT_1787 0.43 +0.0
1,801,819 - EX28DRAFT_1787 0.43 -0.4
1,801,858 + EX28DRAFT_1787 0.59 +0.9
1,801,859 - EX28DRAFT_1787 0.59 -0.2
1,801,938 + +0.0
1,801,959 + -0.7
1,801,975 - -1.1
1,801,989 + -0.2
1,801,989 + -2.0
1,802,012 + -0.4
1,802,249 - +0.8
1,802,317 - -0.0
1,802,323 - +0.2
1,802,323 - +0.3
1,802,323 - +0.4
1,802,401 - EX28DRAFT_1789 0.11 +0.3

Or see this region's nucleotide sequence