Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1596 and EX28DRAFT_1597 are separated by 319 nucleotides EX28DRAFT_1597 and EX28DRAFT_1598 are separated by 174 nucleotides EX28DRAFT_1598 and EX28DRAFT_1599 are separated by 452 nucleotides EX28DRAFT_1599 and EX28DRAFT_1600 are separated by 209 nucleotides
EX28DRAFT_1596: EX28DRAFT_1596 - Protein of unknown function (DUF1019), at 1,611,987 to 1,612,538
_1596
EX28DRAFT_1597: EX28DRAFT_1597 - Helix-turn-helix, at 1,612,858 to 1,613,241
_1597
EX28DRAFT_1598: EX28DRAFT_1598 - P63C domain, at 1,613,416 to 1,614,402
_1598
EX28DRAFT_1599: EX28DRAFT_1599 - hypothetical protein, at 1,614,855 to 1,615,046
_1599
EX28DRAFT_1600: EX28DRAFT_1600 - Protein of unknown function (DUF1482), at 1,615,256 to 1,615,432
_1600
Position (kb)
1613
1614
1615 Strain fitness (log2 ratio)
-2
-1
0
1 at 1612.496 kb on + strand at 1612.511 kb on + strand at 1612.511 kb on + strand at 1612.538 kb on + strand at 1612.538 kb on + strand at 1612.542 kb on + strand at 1612.542 kb on + strand at 1612.759 kb on + strand at 1612.759 kb on + strand at 1612.759 kb on + strand at 1612.846 kb on + strand at 1612.846 kb on + strand at 1612.857 kb on + strand at 1613.382 kb on - strand at 1613.393 kb on - strand at 1613.600 kb on + strand, within EX28DRAFT_1598 at 1613.600 kb on + strand, within EX28DRAFT_1598 at 1613.608 kb on + strand, within EX28DRAFT_1598 at 1613.615 kb on + strand, within EX28DRAFT_1598 at 1613.615 kb on + strand, within EX28DRAFT_1598 at 1613.616 kb on - strand, within EX28DRAFT_1598 at 1613.796 kb on + strand, within EX28DRAFT_1598 at 1613.843 kb on + strand, within EX28DRAFT_1598 at 1613.918 kb on + strand, within EX28DRAFT_1598 at 1613.949 kb on + strand, within EX28DRAFT_1598 at 1614.045 kb on - strand, within EX28DRAFT_1598 at 1614.060 kb on + strand, within EX28DRAFT_1598 at 1614.066 kb on + strand, within EX28DRAFT_1598 at 1614.077 kb on - strand, within EX28DRAFT_1598 at 1614.089 kb on + strand, within EX28DRAFT_1598 at 1614.142 kb on + strand, within EX28DRAFT_1598 at 1614.207 kb on + strand, within EX28DRAFT_1598 at 1614.212 kb on + strand, within EX28DRAFT_1598 at 1614.212 kb on + strand, within EX28DRAFT_1598 at 1614.212 kb on + strand, within EX28DRAFT_1598 at 1614.212 kb on + strand, within EX28DRAFT_1598 at 1614.223 kb on - strand, within EX28DRAFT_1598 at 1614.285 kb on + strand, within EX28DRAFT_1598 at 1614.400 kb on + strand at 1614.431 kb on + strand at 1614.468 kb on + strand at 1614.469 kb on - strand at 1614.472 kb on + strand at 1614.526 kb on + strand at 1614.672 kb on - strand at 1614.716 kb on - strand at 1614.737 kb on + strand at 1614.748 kb on - strand at 1614.748 kb on - strand at 1614.748 kb on - strand at 1614.749 kb on + strand at 1614.749 kb on + strand at 1614.750 kb on - strand at 1614.779 kb on + strand at 1614.796 kb on + strand at 1614.829 kb on - strand at 1614.848 kb on + strand at 1614.848 kb on + strand at 1614.848 kb on + strand at 1614.848 kb on + strand at 1614.848 kb on + strand at 1614.848 kb on + strand at 1614.848 kb on + strand at 1614.848 kb on + strand at 1614.849 kb on - strand at 1614.849 kb on - strand at 1614.849 kb on - strand at 1614.849 kb on - strand at 1614.850 kb on + strand at 1614.851 kb on - strand at 1614.851 kb on - strand at 1614.851 kb on - strand at 1614.851 kb on - strand at 1614.851 kb on - strand at 1614.856 kb on + strand at 1614.986 kb on - strand, within EX28DRAFT_1599 at 1614.993 kb on - strand, within EX28DRAFT_1599 at 1614.993 kb on - strand, within EX28DRAFT_1599 at 1614.993 kb on - strand, within EX28DRAFT_1599 at 1614.994 kb on + strand, within EX28DRAFT_1599 at 1614.994 kb on + strand, within EX28DRAFT_1599 at 1614.994 kb on + strand, within EX28DRAFT_1599 at 1614.995 kb on - strand, within EX28DRAFT_1599 at 1614.995 kb on - strand, within EX28DRAFT_1599 at 1614.995 kb on - strand, within EX28DRAFT_1599 at 1614.995 kb on - strand, within EX28DRAFT_1599 at 1615.022 kb on - strand, within EX28DRAFT_1599 at 1615.051 kb on - strand at 1615.062 kb on + strand at 1615.063 kb on - strand at 1615.108 kb on - strand at 1615.131 kb on - strand at 1615.131 kb on - strand at 1615.134 kb on + strand at 1615.218 kb on + strand at 1615.250 kb on - strand at 1615.250 kb on - strand at 1615.250 kb on - strand at 1615.330 kb on - strand, within EX28DRAFT_1600 at 1615.331 kb on + strand, within EX28DRAFT_1600 at 1615.331 kb on + strand, within EX28DRAFT_1600 at 1615.397 kb on + strand, within EX28DRAFT_1600 at 1615.398 kb on - strand, within EX28DRAFT_1600
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,612,496 + +0.1 1,612,511 + -1.2 1,612,511 + -0.7 1,612,538 + +0.4 1,612,538 + +0.6 1,612,542 + +0.2 1,612,542 + -0.5 1,612,759 + -0.1 1,612,759 + +0.5 1,612,759 + -0.3 1,612,846 + +0.3 1,612,846 + +0.8 1,612,857 + +0.2 1,613,382 - -0.6 1,613,393 - -0.2 1,613,600 + EX28DRAFT_1598 0.19 -0.0 1,613,600 + EX28DRAFT_1598 0.19 +0.4 1,613,608 + EX28DRAFT_1598 0.19 -0.3 1,613,615 + EX28DRAFT_1598 0.20 +0.1 1,613,615 + EX28DRAFT_1598 0.20 +0.3 1,613,616 - EX28DRAFT_1598 0.20 +0.3 1,613,796 + EX28DRAFT_1598 0.39 -0.9 1,613,843 + EX28DRAFT_1598 0.43 -0.4 1,613,918 + EX28DRAFT_1598 0.51 +0.1 1,613,949 + EX28DRAFT_1598 0.54 -0.3 1,614,045 - EX28DRAFT_1598 0.64 -0.3 1,614,060 + EX28DRAFT_1598 0.65 -0.6 1,614,066 + EX28DRAFT_1598 0.66 +0.4 1,614,077 - EX28DRAFT_1598 0.67 -1.7 1,614,089 + EX28DRAFT_1598 0.68 -0.3 1,614,142 + EX28DRAFT_1598 0.74 +0.0 1,614,207 + EX28DRAFT_1598 0.80 +0.0 1,614,212 + EX28DRAFT_1598 0.81 -0.5 1,614,212 + EX28DRAFT_1598 0.81 -0.7 1,614,212 + EX28DRAFT_1598 0.81 -0.4 1,614,212 + EX28DRAFT_1598 0.81 +0.6 1,614,223 - EX28DRAFT_1598 0.82 -0.3 1,614,285 + EX28DRAFT_1598 0.88 -0.4 1,614,400 + -0.6 1,614,431 + +0.1 1,614,468 + -0.0 1,614,469 - -0.2 1,614,472 + -0.5 1,614,526 + -0.2 1,614,672 - +0.2 1,614,716 - -0.5 1,614,737 + +0.8 1,614,748 - -0.5 1,614,748 - +0.0 1,614,748 - +0.2 1,614,749 + -0.5 1,614,749 + +0.5 1,614,750 - +0.2 1,614,779 + -0.5 1,614,796 + -0.4 1,614,829 - -0.2 1,614,848 + +0.2 1,614,848 + -0.6 1,614,848 + +0.1 1,614,848 + +0.2 1,614,848 + +0.4 1,614,848 + -0.4 1,614,848 + +0.1 1,614,848 + -0.0 1,614,849 - -0.1 1,614,849 - -0.4 1,614,849 - -0.7 1,614,849 - +0.2 1,614,850 + +0.0 1,614,851 - +0.1 1,614,851 - +0.1 1,614,851 - +0.2 1,614,851 - -0.4 1,614,851 - +1.0 1,614,856 + +0.1 1,614,986 - EX28DRAFT_1599 0.68 +0.1 1,614,993 - EX28DRAFT_1599 0.72 +0.3 1,614,993 - EX28DRAFT_1599 0.72 -0.1 1,614,993 - EX28DRAFT_1599 0.72 +0.1 1,614,994 + EX28DRAFT_1599 0.72 -0.1 1,614,994 + EX28DRAFT_1599 0.72 +0.5 1,614,994 + EX28DRAFT_1599 0.72 +0.1 1,614,995 - EX28DRAFT_1599 0.73 +0.1 1,614,995 - EX28DRAFT_1599 0.73 +0.2 1,614,995 - EX28DRAFT_1599 0.73 +0.1 1,614,995 - EX28DRAFT_1599 0.73 -0.1 1,615,022 - EX28DRAFT_1599 0.87 +0.0 1,615,051 - +0.2 1,615,062 + -0.8 1,615,063 - -0.0 1,615,108 - +0.3 1,615,131 - +0.1 1,615,131 - -0.1 1,615,134 + -0.1 1,615,218 + +0.4 1,615,250 - -2.6 1,615,250 - -0.0 1,615,250 - +0.8 1,615,330 - EX28DRAFT_1600 0.42 -0.2 1,615,331 + EX28DRAFT_1600 0.42 +0.0 1,615,331 + EX28DRAFT_1600 0.42 +0.1 1,615,397 + EX28DRAFT_1600 0.80 +0.6 1,615,398 - EX28DRAFT_1600 0.80 -0.1
Or see this region's nucleotide sequence