Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1591

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1589 and EX28DRAFT_1590 are separated by 17 nucleotidesEX28DRAFT_1590 and EX28DRAFT_1591 are separated by 397 nucleotidesEX28DRAFT_1591 and EX28DRAFT_1592 are separated by 192 nucleotides EX28DRAFT_1589: EX28DRAFT_1589 - Cellobiose phosphorylase, at 1,599,027 to 1,607,609 _1589 EX28DRAFT_1590: EX28DRAFT_1590 - hypothetical protein, at 1,607,627 to 1,607,863 _1590 EX28DRAFT_1591: EX28DRAFT_1591 - hypothetical protein, at 1,608,261 to 1,608,536 _1591 EX28DRAFT_1592: EX28DRAFT_1592 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase, at 1,608,729 to 1,609,637 _1592 Position (kb) 1608 1609Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1607.275 kb on + strandat 1607.275 kb on + strandat 1607.276 kb on - strandat 1607.276 kb on - strandat 1607.293 kb on - strandat 1607.310 kb on - strandat 1607.389 kb on + strandat 1607.416 kb on + strandat 1607.416 kb on + strandat 1607.417 kb on - strandat 1607.417 kb on - strandat 1607.417 kb on - strandat 1607.417 kb on - strandat 1607.461 kb on - strandat 1607.482 kb on - strandat 1607.524 kb on + strandat 1607.525 kb on - strandat 1607.527 kb on + strandat 1607.528 kb on - strandat 1607.528 kb on - strandat 1607.528 kb on - strandat 1607.528 kb on - strandat 1607.528 kb on - strandat 1607.528 kb on - strandat 1607.528 kb on - strandat 1607.587 kb on + strandat 1607.587 kb on + strandat 1607.587 kb on + strandat 1607.588 kb on - strandat 1607.590 kb on + strandat 1607.591 kb on - strandat 1607.591 kb on - strandat 1607.617 kb on + strandat 1607.660 kb on - strand, within EX28DRAFT_1590at 1607.713 kb on + strand, within EX28DRAFT_1590at 1607.893 kb on - strandat 1607.968 kb on - strandat 1608.042 kb on + strandat 1608.083 kb on - strandat 1608.242 kb on + strandat 1608.343 kb on - strand, within EX28DRAFT_1591at 1608.343 kb on - strand, within EX28DRAFT_1591at 1608.372 kb on - strand, within EX28DRAFT_1591at 1608.453 kb on + strand, within EX28DRAFT_1591at 1608.834 kb on + strand, within EX28DRAFT_1592at 1608.893 kb on + strand, within EX28DRAFT_1592at 1608.959 kb on - strand, within EX28DRAFT_1592at 1608.962 kb on + strand, within EX28DRAFT_1592at 1608.962 kb on + strand, within EX28DRAFT_1592at 1609.170 kb on + strand, within EX28DRAFT_1592at 1609.171 kb on - strand, within EX28DRAFT_1592at 1609.253 kb on + strand, within EX28DRAFT_1592at 1609.254 kb on - strand, within EX28DRAFT_1592at 1609.254 kb on - strand, within EX28DRAFT_1592at 1609.259 kb on - strand, within EX28DRAFT_1592at 1609.259 kb on - strand, within EX28DRAFT_1592at 1609.268 kb on - strand, within EX28DRAFT_1592at 1609.389 kb on + strand, within EX28DRAFT_1592at 1609.430 kb on + strand, within EX28DRAFT_1592at 1609.430 kb on + strand, within EX28DRAFT_1592at 1609.431 kb on - strand, within EX28DRAFT_1592at 1609.431 kb on - strand, within EX28DRAFT_1592at 1609.461 kb on + strand, within EX28DRAFT_1592at 1609.466 kb on + strand, within EX28DRAFT_1592at 1609.466 kb on + strand, within EX28DRAFT_1592at 1609.466 kb on + strand, within EX28DRAFT_1592at 1609.466 kb on + strand, within EX28DRAFT_1592at 1609.466 kb on + strand, within EX28DRAFT_1592at 1609.467 kb on - strand, within EX28DRAFT_1592at 1609.467 kb on - strand, within EX28DRAFT_1592at 1609.467 kb on - strand, within EX28DRAFT_1592at 1609.467 kb on - strand, within EX28DRAFT_1592at 1609.467 kb on - strand, within EX28DRAFT_1592at 1609.467 kb on - strand, within EX28DRAFT_1592at 1609.467 kb on - strand, within EX28DRAFT_1592at 1609.467 kb on - strand, within EX28DRAFT_1592at 1609.470 kb on + strand, within EX28DRAFT_1592at 1609.470 kb on + strand, within EX28DRAFT_1592at 1609.470 kb on + strand, within EX28DRAFT_1592at 1609.470 kb on + strand, within EX28DRAFT_1592at 1609.470 kb on + strand, within EX28DRAFT_1592at 1609.471 kb on - strand, within EX28DRAFT_1592at 1609.471 kb on - strand, within EX28DRAFT_1592at 1609.471 kb on - strand, within EX28DRAFT_1592at 1609.471 kb on - strand, within EX28DRAFT_1592at 1609.471 kb on - strand, within EX28DRAFT_1592at 1609.473 kb on - strand, within EX28DRAFT_1592at 1609.473 kb on - strand, within EX28DRAFT_1592at 1609.478 kb on + strand, within EX28DRAFT_1592at 1609.479 kb on - strand, within EX28DRAFT_1592at 1609.479 kb on - strand, within EX28DRAFT_1592at 1609.489 kb on + strand, within EX28DRAFT_1592at 1609.527 kb on + strand, within EX28DRAFT_1592at 1609.527 kb on + strand, within EX28DRAFT_1592at 1609.527 kb on + strand, within EX28DRAFT_1592at 1609.527 kb on + strand, within EX28DRAFT_1592at 1609.528 kb on - strand, within EX28DRAFT_1592at 1609.530 kb on - strand, within EX28DRAFT_1592at 1609.536 kb on - strand, within EX28DRAFT_1592

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,607,275 + -0.5
1,607,275 + -0.3
1,607,276 - +0.3
1,607,276 - +0.7
1,607,293 - +0.5
1,607,310 - +1.0
1,607,389 + -0.0
1,607,416 + +0.1
1,607,416 + +0.4
1,607,417 - -1.0
1,607,417 - -0.4
1,607,417 - +0.3
1,607,417 - -0.1
1,607,461 - -0.3
1,607,482 - -0.6
1,607,524 + -0.1
1,607,525 - +0.1
1,607,527 + +0.2
1,607,528 - +4.3
1,607,528 - +1.8
1,607,528 - -1.6
1,607,528 - -0.7
1,607,528 - +0.9
1,607,528 - +0.5
1,607,528 - -0.2
1,607,587 + -0.3
1,607,587 + -0.2
1,607,587 + -2.5
1,607,588 - -1.8
1,607,590 + -0.8
1,607,591 - -0.2
1,607,591 - -0.4
1,607,617 + +0.3
1,607,660 - EX28DRAFT_1590 0.14 +0.2
1,607,713 + EX28DRAFT_1590 0.36 -0.3
1,607,893 - +0.1
1,607,968 - -0.3
1,608,042 + -0.3
1,608,083 - +0.1
1,608,242 + -0.4
1,608,343 - EX28DRAFT_1591 0.30 +0.3
1,608,343 - EX28DRAFT_1591 0.30 -1.1
1,608,372 - EX28DRAFT_1591 0.40 -0.1
1,608,453 + EX28DRAFT_1591 0.70 -1.2
1,608,834 + EX28DRAFT_1592 0.12 +0.4
1,608,893 + EX28DRAFT_1592 0.18 -0.2
1,608,959 - EX28DRAFT_1592 0.25 -0.4
1,608,962 + EX28DRAFT_1592 0.26 +0.2
1,608,962 + EX28DRAFT_1592 0.26 +0.2
1,609,170 + EX28DRAFT_1592 0.49 +0.0
1,609,171 - EX28DRAFT_1592 0.49 -0.1
1,609,253 + EX28DRAFT_1592 0.58 +0.5
1,609,254 - EX28DRAFT_1592 0.58 +0.7
1,609,254 - EX28DRAFT_1592 0.58 +0.4
1,609,259 - EX28DRAFT_1592 0.58 +0.0
1,609,259 - EX28DRAFT_1592 0.58 +0.2
1,609,268 - EX28DRAFT_1592 0.59 -0.6
1,609,389 + EX28DRAFT_1592 0.73 -1.3
1,609,430 + EX28DRAFT_1592 0.77 +0.7
1,609,430 + EX28DRAFT_1592 0.77 +1.4
1,609,431 - EX28DRAFT_1592 0.77 +0.0
1,609,431 - EX28DRAFT_1592 0.77 -0.1
1,609,461 + EX28DRAFT_1592 0.81 -0.2
1,609,466 + EX28DRAFT_1592 0.81 -0.5
1,609,466 + EX28DRAFT_1592 0.81 -0.4
1,609,466 + EX28DRAFT_1592 0.81 +0.6
1,609,466 + EX28DRAFT_1592 0.81 +0.5
1,609,466 + EX28DRAFT_1592 0.81 +0.6
1,609,467 - EX28DRAFT_1592 0.81 +0.6
1,609,467 - EX28DRAFT_1592 0.81 -0.4
1,609,467 - EX28DRAFT_1592 0.81 +0.2
1,609,467 - EX28DRAFT_1592 0.81 -1.5
1,609,467 - EX28DRAFT_1592 0.81 +0.5
1,609,467 - EX28DRAFT_1592 0.81 -0.4
1,609,467 - EX28DRAFT_1592 0.81 -0.9
1,609,467 - EX28DRAFT_1592 0.81 +0.1
1,609,470 + EX28DRAFT_1592 0.82 -0.2
1,609,470 + EX28DRAFT_1592 0.82 +0.5
1,609,470 + EX28DRAFT_1592 0.82 -0.4
1,609,470 + EX28DRAFT_1592 0.82 +0.4
1,609,470 + EX28DRAFT_1592 0.82 +0.7
1,609,471 - EX28DRAFT_1592 0.82 -0.0
1,609,471 - EX28DRAFT_1592 0.82 +0.2
1,609,471 - EX28DRAFT_1592 0.82 +1.0
1,609,471 - EX28DRAFT_1592 0.82 +0.2
1,609,471 - EX28DRAFT_1592 0.82 +0.5
1,609,473 - EX28DRAFT_1592 0.82 -0.5
1,609,473 - EX28DRAFT_1592 0.82 -0.9
1,609,478 + EX28DRAFT_1592 0.82 +0.7
1,609,479 - EX28DRAFT_1592 0.83 +0.5
1,609,479 - EX28DRAFT_1592 0.83 +0.0
1,609,489 + EX28DRAFT_1592 0.84 -1.2
1,609,527 + EX28DRAFT_1592 0.88 +0.1
1,609,527 + EX28DRAFT_1592 0.88 -0.2
1,609,527 + EX28DRAFT_1592 0.88 -0.4
1,609,527 + EX28DRAFT_1592 0.88 -2.5
1,609,528 - EX28DRAFT_1592 0.88 -0.1
1,609,530 - EX28DRAFT_1592 0.88 +0.3
1,609,536 - EX28DRAFT_1592 0.89 -0.3

Or see this region's nucleotide sequence