Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1512

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1511 and EX28DRAFT_1512 are separated by 3 nucleotidesEX28DRAFT_1512 and EX28DRAFT_1513 are separated by 28 nucleotides EX28DRAFT_1511: EX28DRAFT_1511 - Predicted permease, at 1,524,978 to 1,526,012 _1511 EX28DRAFT_1512: EX28DRAFT_1512 - NADPH:quinone reductase and related Zn-dependent oxidoreductases, at 1,526,016 to 1,526,963 _1512 EX28DRAFT_1513: EX28DRAFT_1513 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 1,526,992 to 1,528,017 _1513 Position (kb) 1526 1527Strain fitness (log2 ratio) -1 0 1at 1525.046 kb on - strandat 1525.077 kb on - strandat 1525.088 kb on + strand, within EX28DRAFT_1511at 1525.119 kb on - strand, within EX28DRAFT_1511at 1525.266 kb on + strand, within EX28DRAFT_1511at 1525.266 kb on + strand, within EX28DRAFT_1511at 1525.356 kb on + strand, within EX28DRAFT_1511at 1525.357 kb on - strand, within EX28DRAFT_1511at 1525.359 kb on - strand, within EX28DRAFT_1511at 1525.680 kb on + strand, within EX28DRAFT_1511at 1525.680 kb on + strand, within EX28DRAFT_1511at 1525.680 kb on + strand, within EX28DRAFT_1511at 1525.680 kb on + strand, within EX28DRAFT_1511at 1525.680 kb on + strand, within EX28DRAFT_1511at 1525.681 kb on - strand, within EX28DRAFT_1511at 1525.681 kb on - strand, within EX28DRAFT_1511at 1525.681 kb on - strand, within EX28DRAFT_1511at 1525.682 kb on + strand, within EX28DRAFT_1511at 1525.753 kb on - strand, within EX28DRAFT_1511at 1526.007 kb on - strandat 1526.011 kb on - strandat 1526.066 kb on - strandat 1526.069 kb on + strandat 1526.119 kb on + strand, within EX28DRAFT_1512at 1526.138 kb on + strand, within EX28DRAFT_1512at 1526.342 kb on - strand, within EX28DRAFT_1512at 1526.595 kb on - strand, within EX28DRAFT_1512at 1526.596 kb on + strand, within EX28DRAFT_1512at 1526.596 kb on + strand, within EX28DRAFT_1512at 1526.596 kb on + strand, within EX28DRAFT_1512at 1526.597 kb on - strand, within EX28DRAFT_1512at 1526.597 kb on - strand, within EX28DRAFT_1512at 1526.597 kb on - strand, within EX28DRAFT_1512at 1526.597 kb on - strand, within EX28DRAFT_1512at 1526.597 kb on - strand, within EX28DRAFT_1512at 1526.597 kb on - strand, within EX28DRAFT_1512at 1526.647 kb on + strand, within EX28DRAFT_1512at 1526.647 kb on + strand, within EX28DRAFT_1512at 1526.648 kb on - strand, within EX28DRAFT_1512at 1526.648 kb on - strand, within EX28DRAFT_1512at 1526.668 kb on + strand, within EX28DRAFT_1512at 1527.057 kb on - strandat 1527.088 kb on + strandat 1527.089 kb on - strandat 1527.091 kb on + strandat 1527.092 kb on - strandat 1527.092 kb on - strandat 1527.161 kb on + strand, within EX28DRAFT_1513at 1527.239 kb on + strand, within EX28DRAFT_1513at 1527.307 kb on - strand, within EX28DRAFT_1513at 1527.472 kb on - strand, within EX28DRAFT_1513at 1527.472 kb on - strand, within EX28DRAFT_1513at 1527.472 kb on - strand, within EX28DRAFT_1513at 1527.472 kb on - strand, within EX28DRAFT_1513at 1527.534 kb on + strand, within EX28DRAFT_1513at 1527.534 kb on + strand, within EX28DRAFT_1513at 1527.535 kb on - strand, within EX28DRAFT_1513at 1527.535 kb on - strand, within EX28DRAFT_1513at 1527.752 kb on + strand, within EX28DRAFT_1513at 1527.752 kb on + strand, within EX28DRAFT_1513at 1527.753 kb on - strand, within EX28DRAFT_1513at 1527.753 kb on - strand, within EX28DRAFT_1513at 1527.753 kb on - strand, within EX28DRAFT_1513at 1527.849 kb on + strand, within EX28DRAFT_1513at 1527.849 kb on + strand, within EX28DRAFT_1513at 1527.881 kb on + strand, within EX28DRAFT_1513at 1527.884 kb on - strand, within EX28DRAFT_1513

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,525,046 - -0.8
1,525,077 - +1.1
1,525,088 + EX28DRAFT_1511 0.11 +0.8
1,525,119 - EX28DRAFT_1511 0.14 -0.0
1,525,266 + EX28DRAFT_1511 0.28 -0.2
1,525,266 + EX28DRAFT_1511 0.28 -0.0
1,525,356 + EX28DRAFT_1511 0.37 -0.4
1,525,357 - EX28DRAFT_1511 0.37 +0.0
1,525,359 - EX28DRAFT_1511 0.37 +0.6
1,525,680 + EX28DRAFT_1511 0.68 +0.1
1,525,680 + EX28DRAFT_1511 0.68 +0.1
1,525,680 + EX28DRAFT_1511 0.68 -0.3
1,525,680 + EX28DRAFT_1511 0.68 +0.7
1,525,680 + EX28DRAFT_1511 0.68 -0.5
1,525,681 - EX28DRAFT_1511 0.68 +0.2
1,525,681 - EX28DRAFT_1511 0.68 +1.0
1,525,681 - EX28DRAFT_1511 0.68 +0.0
1,525,682 + EX28DRAFT_1511 0.68 -0.4
1,525,753 - EX28DRAFT_1511 0.75 -0.2
1,526,007 - -0.1
1,526,011 - +0.3
1,526,066 - +0.0
1,526,069 + -0.1
1,526,119 + EX28DRAFT_1512 0.11 +0.6
1,526,138 + EX28DRAFT_1512 0.13 -0.2
1,526,342 - EX28DRAFT_1512 0.34 +0.1
1,526,595 - EX28DRAFT_1512 0.61 -0.6
1,526,596 + EX28DRAFT_1512 0.61 +0.8
1,526,596 + EX28DRAFT_1512 0.61 -0.2
1,526,596 + EX28DRAFT_1512 0.61 -0.1
1,526,597 - EX28DRAFT_1512 0.61 +1.4
1,526,597 - EX28DRAFT_1512 0.61 +0.7
1,526,597 - EX28DRAFT_1512 0.61 +0.2
1,526,597 - EX28DRAFT_1512 0.61 +0.2
1,526,597 - EX28DRAFT_1512 0.61 -0.1
1,526,597 - EX28DRAFT_1512 0.61 +0.2
1,526,647 + EX28DRAFT_1512 0.67 -0.1
1,526,647 + EX28DRAFT_1512 0.67 +0.6
1,526,648 - EX28DRAFT_1512 0.67 +0.2
1,526,648 - EX28DRAFT_1512 0.67 +0.7
1,526,668 + EX28DRAFT_1512 0.69 -0.1
1,527,057 - -0.2
1,527,088 + -0.0
1,527,089 - +0.7
1,527,091 + +0.2
1,527,092 - -1.0
1,527,092 - +0.6
1,527,161 + EX28DRAFT_1513 0.16 -0.0
1,527,239 + EX28DRAFT_1513 0.24 -0.1
1,527,307 - EX28DRAFT_1513 0.31 -0.3
1,527,472 - EX28DRAFT_1513 0.47 -0.5
1,527,472 - EX28DRAFT_1513 0.47 +0.1
1,527,472 - EX28DRAFT_1513 0.47 -0.1
1,527,472 - EX28DRAFT_1513 0.47 +0.1
1,527,534 + EX28DRAFT_1513 0.53 -0.1
1,527,534 + EX28DRAFT_1513 0.53 +0.0
1,527,535 - EX28DRAFT_1513 0.53 +0.2
1,527,535 - EX28DRAFT_1513 0.53 +1.4
1,527,752 + EX28DRAFT_1513 0.74 +0.1
1,527,752 + EX28DRAFT_1513 0.74 -0.1
1,527,753 - EX28DRAFT_1513 0.74 -0.9
1,527,753 - EX28DRAFT_1513 0.74 -0.1
1,527,753 - EX28DRAFT_1513 0.74 +0.8
1,527,849 + EX28DRAFT_1513 0.84 -0.7
1,527,849 + EX28DRAFT_1513 0.84 +0.2
1,527,881 + EX28DRAFT_1513 0.87 +0.8
1,527,884 - EX28DRAFT_1513 0.87 -0.3

Or see this region's nucleotide sequence