Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1465

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1463 and EX28DRAFT_1464 are separated by 93 nucleotidesEX28DRAFT_1464 and EX28DRAFT_1465 are separated by 40 nucleotidesEX28DRAFT_1465 and EX28DRAFT_1466 are separated by 169 nucleotidesEX28DRAFT_1466 and EX28DRAFT_1467 are separated by 253 nucleotides EX28DRAFT_1463: EX28DRAFT_1463 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family, at 1,475,089 to 1,477,527 _1463 EX28DRAFT_1464: EX28DRAFT_1464 - Uncharacterized component of anaerobic dehydrogenases, at 1,477,621 to 1,478,235 _1464 EX28DRAFT_1465: EX28DRAFT_1465 - Sulfate permease and related transporters (MFS superfamily), at 1,478,276 to 1,479,991 _1465 EX28DRAFT_1466: EX28DRAFT_1466 - Lactoylglutathione lyase and related lyases, at 1,480,161 to 1,480,586 _1466 EX28DRAFT_1467: EX28DRAFT_1467 - hypothetical protein, at 1,480,840 to 1,481,388 _1467 Position (kb) 1478 1479 1480Strain fitness (log2 ratio) -2 -1 0 1at 1477.525 kb on + strandat 1477.526 kb on - strandat 1477.526 kb on - strandat 1477.553 kb on - strandat 1477.639 kb on - strandat 1477.684 kb on + strand, within EX28DRAFT_1464at 1477.848 kb on + strand, within EX28DRAFT_1464at 1478.172 kb on - strand, within EX28DRAFT_1464at 1478.277 kb on + strandat 1478.277 kb on + strandat 1478.278 kb on - strandat 1478.279 kb on + strandat 1478.280 kb on - strandat 1478.321 kb on - strandat 1478.337 kb on + strandat 1478.438 kb on - strandat 1478.466 kb on - strand, within EX28DRAFT_1465at 1478.474 kb on + strand, within EX28DRAFT_1465at 1478.474 kb on + strand, within EX28DRAFT_1465at 1478.503 kb on - strand, within EX28DRAFT_1465at 1478.546 kb on + strand, within EX28DRAFT_1465at 1478.546 kb on + strand, within EX28DRAFT_1465at 1478.546 kb on + strand, within EX28DRAFT_1465at 1478.547 kb on - strand, within EX28DRAFT_1465at 1478.628 kb on + strand, within EX28DRAFT_1465at 1478.653 kb on + strand, within EX28DRAFT_1465at 1478.665 kb on + strand, within EX28DRAFT_1465at 1478.672 kb on + strand, within EX28DRAFT_1465at 1478.673 kb on - strand, within EX28DRAFT_1465at 1478.708 kb on + strand, within EX28DRAFT_1465at 1478.708 kb on + strand, within EX28DRAFT_1465at 1478.842 kb on + strand, within EX28DRAFT_1465at 1478.842 kb on + strand, within EX28DRAFT_1465at 1478.843 kb on - strand, within EX28DRAFT_1465at 1478.899 kb on - strand, within EX28DRAFT_1465at 1478.899 kb on - strand, within EX28DRAFT_1465at 1478.899 kb on - strand, within EX28DRAFT_1465at 1478.916 kb on - strand, within EX28DRAFT_1465at 1478.916 kb on - strand, within EX28DRAFT_1465at 1478.916 kb on - strand, within EX28DRAFT_1465at 1478.916 kb on - strand, within EX28DRAFT_1465at 1478.933 kb on - strand, within EX28DRAFT_1465at 1479.086 kb on - strand, within EX28DRAFT_1465at 1479.086 kb on - strand, within EX28DRAFT_1465at 1479.128 kb on - strand, within EX28DRAFT_1465at 1479.267 kb on - strand, within EX28DRAFT_1465at 1479.305 kb on - strand, within EX28DRAFT_1465at 1479.309 kb on + strand, within EX28DRAFT_1465at 1479.402 kb on - strand, within EX28DRAFT_1465at 1479.402 kb on - strand, within EX28DRAFT_1465at 1479.405 kb on - strand, within EX28DRAFT_1465at 1479.444 kb on - strand, within EX28DRAFT_1465at 1479.479 kb on + strand, within EX28DRAFT_1465at 1479.480 kb on - strand, within EX28DRAFT_1465at 1479.480 kb on - strand, within EX28DRAFT_1465at 1479.480 kb on - strand, within EX28DRAFT_1465at 1479.530 kb on + strand, within EX28DRAFT_1465at 1479.531 kb on - strand, within EX28DRAFT_1465at 1479.565 kb on + strand, within EX28DRAFT_1465at 1479.566 kb on - strand, within EX28DRAFT_1465at 1479.668 kb on - strand, within EX28DRAFT_1465at 1479.668 kb on - strand, within EX28DRAFT_1465at 1479.764 kb on - strand, within EX28DRAFT_1465at 1479.792 kb on + strand, within EX28DRAFT_1465at 1479.793 kb on - strand, within EX28DRAFT_1465at 1479.793 kb on - strand, within EX28DRAFT_1465at 1479.820 kb on - strandat 1479.831 kb on - strandat 1479.859 kb on - strandat 1479.908 kb on - strandat 1479.937 kb on - strandat 1479.954 kb on - strandat 1479.971 kb on + strandat 1479.975 kb on - strandat 1479.975 kb on - strandat 1480.095 kb on - strandat 1480.097 kb on + strandat 1480.131 kb on + strandat 1480.198 kb on + strandat 1480.199 kb on - strandat 1480.224 kb on - strand, within EX28DRAFT_1466at 1480.256 kb on - strand, within EX28DRAFT_1466at 1480.256 kb on - strand, within EX28DRAFT_1466at 1480.256 kb on - strand, within EX28DRAFT_1466at 1480.324 kb on - strand, within EX28DRAFT_1466at 1480.566 kb on + strandat 1480.566 kb on + strandat 1480.576 kb on + strandat 1480.576 kb on + strandat 1480.576 kb on + strandat 1480.577 kb on - strandat 1480.624 kb on + strandat 1480.625 kb on - strandat 1480.625 kb on - strandat 1480.625 kb on - strandat 1480.639 kb on - strandat 1480.715 kb on - strandat 1480.766 kb on + strandat 1480.766 kb on + strandat 1480.766 kb on + strandat 1480.767 kb on - strandat 1480.767 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,477,525 + -0.1
1,477,526 - -0.4
1,477,526 - -0.9
1,477,553 - -0.0
1,477,639 - -0.0
1,477,684 + EX28DRAFT_1464 0.10 -0.3
1,477,848 + EX28DRAFT_1464 0.37 -0.7
1,478,172 - EX28DRAFT_1464 0.90 -0.4
1,478,277 + -0.9
1,478,277 + +0.4
1,478,278 - +0.1
1,478,279 + -0.1
1,478,280 - +0.0
1,478,321 - +0.1
1,478,337 + +0.0
1,478,438 - -0.7
1,478,466 - EX28DRAFT_1465 0.11 +0.7
1,478,474 + EX28DRAFT_1465 0.12 -0.1
1,478,474 + EX28DRAFT_1465 0.12 +0.2
1,478,503 - EX28DRAFT_1465 0.13 -0.3
1,478,546 + EX28DRAFT_1465 0.16 +0.3
1,478,546 + EX28DRAFT_1465 0.16 -0.1
1,478,546 + EX28DRAFT_1465 0.16 +0.0
1,478,547 - EX28DRAFT_1465 0.16 +0.0
1,478,628 + EX28DRAFT_1465 0.21 +0.1
1,478,653 + EX28DRAFT_1465 0.22 -0.0
1,478,665 + EX28DRAFT_1465 0.23 -1.8
1,478,672 + EX28DRAFT_1465 0.23 +0.4
1,478,673 - EX28DRAFT_1465 0.23 +0.1
1,478,708 + EX28DRAFT_1465 0.25 -0.5
1,478,708 + EX28DRAFT_1465 0.25 +0.7
1,478,842 + EX28DRAFT_1465 0.33 -0.2
1,478,842 + EX28DRAFT_1465 0.33 +0.5
1,478,843 - EX28DRAFT_1465 0.33 -0.6
1,478,899 - EX28DRAFT_1465 0.36 -0.1
1,478,899 - EX28DRAFT_1465 0.36 -0.0
1,478,899 - EX28DRAFT_1465 0.36 +0.4
1,478,916 - EX28DRAFT_1465 0.37 +0.4
1,478,916 - EX28DRAFT_1465 0.37 -0.3
1,478,916 - EX28DRAFT_1465 0.37 +0.2
1,478,916 - EX28DRAFT_1465 0.37 -0.6
1,478,933 - EX28DRAFT_1465 0.38 -0.0
1,479,086 - EX28DRAFT_1465 0.47 -0.6
1,479,086 - EX28DRAFT_1465 0.47 -0.1
1,479,128 - EX28DRAFT_1465 0.50 +0.7
1,479,267 - EX28DRAFT_1465 0.58 -0.1
1,479,305 - EX28DRAFT_1465 0.60 -0.5
1,479,309 + EX28DRAFT_1465 0.60 +0.0
1,479,402 - EX28DRAFT_1465 0.66 +0.5
1,479,402 - EX28DRAFT_1465 0.66 -0.0
1,479,405 - EX28DRAFT_1465 0.66 +1.1
1,479,444 - EX28DRAFT_1465 0.68 +1.6
1,479,479 + EX28DRAFT_1465 0.70 -0.1
1,479,480 - EX28DRAFT_1465 0.70 +0.8
1,479,480 - EX28DRAFT_1465 0.70 -0.2
1,479,480 - EX28DRAFT_1465 0.70 -0.5
1,479,530 + EX28DRAFT_1465 0.73 -0.3
1,479,531 - EX28DRAFT_1465 0.73 +0.3
1,479,565 + EX28DRAFT_1465 0.75 +0.1
1,479,566 - EX28DRAFT_1465 0.75 +0.1
1,479,668 - EX28DRAFT_1465 0.81 -0.1
1,479,668 - EX28DRAFT_1465 0.81 -0.2
1,479,764 - EX28DRAFT_1465 0.87 +0.1
1,479,792 + EX28DRAFT_1465 0.88 -0.6
1,479,793 - EX28DRAFT_1465 0.88 +0.6
1,479,793 - EX28DRAFT_1465 0.88 +1.3
1,479,820 - +0.2
1,479,831 - -1.3
1,479,859 - +0.2
1,479,908 - +1.6
1,479,937 - +1.0
1,479,954 - +0.2
1,479,971 + +1.4
1,479,975 - -0.2
1,479,975 - -0.2
1,480,095 - -0.0
1,480,097 + +0.0
1,480,131 + +0.2
1,480,198 + -0.5
1,480,199 - -0.1
1,480,224 - EX28DRAFT_1466 0.15 +0.3
1,480,256 - EX28DRAFT_1466 0.22 -0.2
1,480,256 - EX28DRAFT_1466 0.22 -0.1
1,480,256 - EX28DRAFT_1466 0.22 +0.1
1,480,324 - EX28DRAFT_1466 0.38 +0.0
1,480,566 + +0.2
1,480,566 + +0.3
1,480,576 + -0.1
1,480,576 + -0.3
1,480,576 + +0.6
1,480,577 - +0.7
1,480,624 + +0.4
1,480,625 - +0.2
1,480,625 - -0.8
1,480,625 - -0.0
1,480,639 - +0.1
1,480,715 - -1.8
1,480,766 + -0.4
1,480,766 + -1.7
1,480,766 + -0.1
1,480,767 - -0.3
1,480,767 - -0.5

Or see this region's nucleotide sequence