Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1463 and EX28DRAFT_1464 are separated by 93 nucleotides EX28DRAFT_1464 and EX28DRAFT_1465 are separated by 40 nucleotides EX28DRAFT_1465 and EX28DRAFT_1466 are separated by 169 nucleotides EX28DRAFT_1466 and EX28DRAFT_1467 are separated by 253 nucleotides
EX28DRAFT_1463: EX28DRAFT_1463 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family, at 1,475,089 to 1,477,527
_1463
EX28DRAFT_1464: EX28DRAFT_1464 - Uncharacterized component of anaerobic dehydrogenases, at 1,477,621 to 1,478,235
_1464
EX28DRAFT_1465: EX28DRAFT_1465 - Sulfate permease and related transporters (MFS superfamily), at 1,478,276 to 1,479,991
_1465
EX28DRAFT_1466: EX28DRAFT_1466 - Lactoylglutathione lyase and related lyases, at 1,480,161 to 1,480,586
_1466
EX28DRAFT_1467: EX28DRAFT_1467 - hypothetical protein, at 1,480,840 to 1,481,388
_1467
Position (kb)
1478
1479
1480 Strain fitness (log2 ratio)
-2
-1
0
1 at 1477.525 kb on + strand at 1477.526 kb on - strand at 1477.526 kb on - strand at 1477.553 kb on - strand at 1477.639 kb on - strand at 1477.684 kb on + strand, within EX28DRAFT_1464 at 1477.848 kb on + strand, within EX28DRAFT_1464 at 1478.172 kb on - strand, within EX28DRAFT_1464 at 1478.277 kb on + strand at 1478.277 kb on + strand at 1478.278 kb on - strand at 1478.279 kb on + strand at 1478.280 kb on - strand at 1478.321 kb on - strand at 1478.337 kb on + strand at 1478.438 kb on - strand at 1478.466 kb on - strand, within EX28DRAFT_1465 at 1478.474 kb on + strand, within EX28DRAFT_1465 at 1478.474 kb on + strand, within EX28DRAFT_1465 at 1478.503 kb on - strand, within EX28DRAFT_1465 at 1478.546 kb on + strand, within EX28DRAFT_1465 at 1478.546 kb on + strand, within EX28DRAFT_1465 at 1478.546 kb on + strand, within EX28DRAFT_1465 at 1478.547 kb on - strand, within EX28DRAFT_1465 at 1478.628 kb on + strand, within EX28DRAFT_1465 at 1478.653 kb on + strand, within EX28DRAFT_1465 at 1478.665 kb on + strand, within EX28DRAFT_1465 at 1478.672 kb on + strand, within EX28DRAFT_1465 at 1478.673 kb on - strand, within EX28DRAFT_1465 at 1478.708 kb on + strand, within EX28DRAFT_1465 at 1478.708 kb on + strand, within EX28DRAFT_1465 at 1478.842 kb on + strand, within EX28DRAFT_1465 at 1478.842 kb on + strand, within EX28DRAFT_1465 at 1478.843 kb on - strand, within EX28DRAFT_1465 at 1478.899 kb on - strand, within EX28DRAFT_1465 at 1478.899 kb on - strand, within EX28DRAFT_1465 at 1478.899 kb on - strand, within EX28DRAFT_1465 at 1478.916 kb on - strand, within EX28DRAFT_1465 at 1478.916 kb on - strand, within EX28DRAFT_1465 at 1478.916 kb on - strand, within EX28DRAFT_1465 at 1478.916 kb on - strand, within EX28DRAFT_1465 at 1478.933 kb on - strand, within EX28DRAFT_1465 at 1479.086 kb on - strand, within EX28DRAFT_1465 at 1479.086 kb on - strand, within EX28DRAFT_1465 at 1479.128 kb on - strand, within EX28DRAFT_1465 at 1479.267 kb on - strand, within EX28DRAFT_1465 at 1479.305 kb on - strand, within EX28DRAFT_1465 at 1479.309 kb on + strand, within EX28DRAFT_1465 at 1479.402 kb on - strand, within EX28DRAFT_1465 at 1479.402 kb on - strand, within EX28DRAFT_1465 at 1479.405 kb on - strand, within EX28DRAFT_1465 at 1479.444 kb on - strand, within EX28DRAFT_1465 at 1479.479 kb on + strand, within EX28DRAFT_1465 at 1479.480 kb on - strand, within EX28DRAFT_1465 at 1479.480 kb on - strand, within EX28DRAFT_1465 at 1479.480 kb on - strand, within EX28DRAFT_1465 at 1479.530 kb on + strand, within EX28DRAFT_1465 at 1479.531 kb on - strand, within EX28DRAFT_1465 at 1479.565 kb on + strand, within EX28DRAFT_1465 at 1479.566 kb on - strand, within EX28DRAFT_1465 at 1479.668 kb on - strand, within EX28DRAFT_1465 at 1479.668 kb on - strand, within EX28DRAFT_1465 at 1479.764 kb on - strand, within EX28DRAFT_1465 at 1479.792 kb on + strand, within EX28DRAFT_1465 at 1479.793 kb on - strand, within EX28DRAFT_1465 at 1479.793 kb on - strand, within EX28DRAFT_1465 at 1479.820 kb on - strand at 1479.831 kb on - strand at 1479.859 kb on - strand at 1479.908 kb on - strand at 1479.937 kb on - strand at 1479.954 kb on - strand at 1479.971 kb on + strand at 1479.975 kb on - strand at 1479.975 kb on - strand at 1480.095 kb on - strand at 1480.097 kb on + strand at 1480.131 kb on + strand at 1480.198 kb on + strand at 1480.199 kb on - strand at 1480.224 kb on - strand, within EX28DRAFT_1466 at 1480.256 kb on - strand, within EX28DRAFT_1466 at 1480.256 kb on - strand, within EX28DRAFT_1466 at 1480.256 kb on - strand, within EX28DRAFT_1466 at 1480.324 kb on - strand, within EX28DRAFT_1466 at 1480.566 kb on + strand at 1480.566 kb on + strand at 1480.576 kb on + strand at 1480.576 kb on + strand at 1480.576 kb on + strand at 1480.577 kb on - strand at 1480.624 kb on + strand at 1480.625 kb on - strand at 1480.625 kb on - strand at 1480.625 kb on - strand at 1480.639 kb on - strand at 1480.715 kb on - strand at 1480.766 kb on + strand at 1480.766 kb on + strand at 1480.766 kb on + strand at 1480.767 kb on - strand at 1480.767 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,477,525 + -0.1 1,477,526 - -0.4 1,477,526 - -0.9 1,477,553 - -0.0 1,477,639 - -0.0 1,477,684 + EX28DRAFT_1464 0.10 -0.3 1,477,848 + EX28DRAFT_1464 0.37 -0.7 1,478,172 - EX28DRAFT_1464 0.90 -0.4 1,478,277 + -0.9 1,478,277 + +0.4 1,478,278 - +0.1 1,478,279 + -0.1 1,478,280 - +0.0 1,478,321 - +0.1 1,478,337 + +0.0 1,478,438 - -0.7 1,478,466 - EX28DRAFT_1465 0.11 +0.7 1,478,474 + EX28DRAFT_1465 0.12 -0.1 1,478,474 + EX28DRAFT_1465 0.12 +0.2 1,478,503 - EX28DRAFT_1465 0.13 -0.3 1,478,546 + EX28DRAFT_1465 0.16 +0.3 1,478,546 + EX28DRAFT_1465 0.16 -0.1 1,478,546 + EX28DRAFT_1465 0.16 +0.0 1,478,547 - EX28DRAFT_1465 0.16 +0.0 1,478,628 + EX28DRAFT_1465 0.21 +0.1 1,478,653 + EX28DRAFT_1465 0.22 -0.0 1,478,665 + EX28DRAFT_1465 0.23 -1.8 1,478,672 + EX28DRAFT_1465 0.23 +0.4 1,478,673 - EX28DRAFT_1465 0.23 +0.1 1,478,708 + EX28DRAFT_1465 0.25 -0.5 1,478,708 + EX28DRAFT_1465 0.25 +0.7 1,478,842 + EX28DRAFT_1465 0.33 -0.2 1,478,842 + EX28DRAFT_1465 0.33 +0.5 1,478,843 - EX28DRAFT_1465 0.33 -0.6 1,478,899 - EX28DRAFT_1465 0.36 -0.1 1,478,899 - EX28DRAFT_1465 0.36 -0.0 1,478,899 - EX28DRAFT_1465 0.36 +0.4 1,478,916 - EX28DRAFT_1465 0.37 +0.4 1,478,916 - EX28DRAFT_1465 0.37 -0.3 1,478,916 - EX28DRAFT_1465 0.37 +0.2 1,478,916 - EX28DRAFT_1465 0.37 -0.6 1,478,933 - EX28DRAFT_1465 0.38 -0.0 1,479,086 - EX28DRAFT_1465 0.47 -0.6 1,479,086 - EX28DRAFT_1465 0.47 -0.1 1,479,128 - EX28DRAFT_1465 0.50 +0.7 1,479,267 - EX28DRAFT_1465 0.58 -0.1 1,479,305 - EX28DRAFT_1465 0.60 -0.5 1,479,309 + EX28DRAFT_1465 0.60 +0.0 1,479,402 - EX28DRAFT_1465 0.66 +0.5 1,479,402 - EX28DRAFT_1465 0.66 -0.0 1,479,405 - EX28DRAFT_1465 0.66 +1.1 1,479,444 - EX28DRAFT_1465 0.68 +1.6 1,479,479 + EX28DRAFT_1465 0.70 -0.1 1,479,480 - EX28DRAFT_1465 0.70 +0.8 1,479,480 - EX28DRAFT_1465 0.70 -0.2 1,479,480 - EX28DRAFT_1465 0.70 -0.5 1,479,530 + EX28DRAFT_1465 0.73 -0.3 1,479,531 - EX28DRAFT_1465 0.73 +0.3 1,479,565 + EX28DRAFT_1465 0.75 +0.1 1,479,566 - EX28DRAFT_1465 0.75 +0.1 1,479,668 - EX28DRAFT_1465 0.81 -0.1 1,479,668 - EX28DRAFT_1465 0.81 -0.2 1,479,764 - EX28DRAFT_1465 0.87 +0.1 1,479,792 + EX28DRAFT_1465 0.88 -0.6 1,479,793 - EX28DRAFT_1465 0.88 +0.6 1,479,793 - EX28DRAFT_1465 0.88 +1.3 1,479,820 - +0.2 1,479,831 - -1.3 1,479,859 - +0.2 1,479,908 - +1.6 1,479,937 - +1.0 1,479,954 - +0.2 1,479,971 + +1.4 1,479,975 - -0.2 1,479,975 - -0.2 1,480,095 - -0.0 1,480,097 + +0.0 1,480,131 + +0.2 1,480,198 + -0.5 1,480,199 - -0.1 1,480,224 - EX28DRAFT_1466 0.15 +0.3 1,480,256 - EX28DRAFT_1466 0.22 -0.2 1,480,256 - EX28DRAFT_1466 0.22 -0.1 1,480,256 - EX28DRAFT_1466 0.22 +0.1 1,480,324 - EX28DRAFT_1466 0.38 +0.0 1,480,566 + +0.2 1,480,566 + +0.3 1,480,576 + -0.1 1,480,576 + -0.3 1,480,576 + +0.6 1,480,577 - +0.7 1,480,624 + +0.4 1,480,625 - +0.2 1,480,625 - -0.8 1,480,625 - -0.0 1,480,639 - +0.1 1,480,715 - -1.8 1,480,766 + -0.4 1,480,766 + -1.7 1,480,766 + -0.1 1,480,767 - -0.3 1,480,767 - -0.5
Or see this region's nucleotide sequence