Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1461

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1459 and EX28DRAFT_1460 overlap by 1 nucleotidesEX28DRAFT_1460 and EX28DRAFT_1461 are separated by 17 nucleotidesEX28DRAFT_1461 and EX28DRAFT_1462 are separated by 104 nucleotidesEX28DRAFT_1462 and EX28DRAFT_1463 are separated by 131 nucleotides EX28DRAFT_1459: EX28DRAFT_1459 - Protein of unknown function (DUF1283), at 1,472,960 to 1,473,298 _1459 EX28DRAFT_1460: EX28DRAFT_1460 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 1,473,298 to 1,473,858 _1460 EX28DRAFT_1461: EX28DRAFT_1461 - Uncharacterised protein family (UPF0257), at 1,473,876 to 1,474,586 _1461 EX28DRAFT_1462: EX28DRAFT_1462 - Protein of unknown function (DUF1161), at 1,474,691 to 1,474,957 _1462 EX28DRAFT_1463: EX28DRAFT_1463 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family, at 1,475,089 to 1,477,527 _1463 Position (kb) 1473 1474 1475Strain fitness (log2 ratio) -2 -1 0 1 2at 1472.933 kb on + strandat 1472.946 kb on + strandat 1472.971 kb on - strandat 1473.318 kb on + strandat 1473.410 kb on - strand, within EX28DRAFT_1460at 1473.565 kb on - strand, within EX28DRAFT_1460at 1473.649 kb on + strand, within EX28DRAFT_1460at 1473.650 kb on - strand, within EX28DRAFT_1460at 1473.771 kb on + strand, within EX28DRAFT_1460at 1473.771 kb on + strand, within EX28DRAFT_1460at 1473.907 kb on + strandat 1473.907 kb on + strandat 1473.908 kb on - strandat 1473.908 kb on - strandat 1473.908 kb on - strandat 1473.971 kb on + strand, within EX28DRAFT_1461at 1474.070 kb on + strand, within EX28DRAFT_1461at 1474.147 kb on + strand, within EX28DRAFT_1461at 1474.153 kb on + strand, within EX28DRAFT_1461at 1474.297 kb on + strand, within EX28DRAFT_1461at 1474.298 kb on - strand, within EX28DRAFT_1461at 1474.300 kb on + strand, within EX28DRAFT_1461at 1474.300 kb on + strand, within EX28DRAFT_1461at 1474.301 kb on - strand, within EX28DRAFT_1461at 1474.576 kb on + strandat 1474.590 kb on + strandat 1474.621 kb on + strandat 1474.632 kb on - strandat 1474.661 kb on + strandat 1474.686 kb on + strandat 1474.726 kb on - strand, within EX28DRAFT_1462at 1474.992 kb on - strandat 1474.998 kb on + strandat 1474.998 kb on + strandat 1474.999 kb on - strandat 1474.999 kb on - strandat 1475.060 kb on - strandat 1475.063 kb on - strandat 1475.063 kb on - strandat 1475.066 kb on + strandat 1475.067 kb on - strandat 1475.070 kb on + strandat 1475.071 kb on - strandat 1475.073 kb on - strandat 1475.362 kb on + strand, within EX28DRAFT_1463at 1475.404 kb on - strand, within EX28DRAFT_1463at 1475.413 kb on - strand, within EX28DRAFT_1463at 1475.566 kb on + strand, within EX28DRAFT_1463at 1475.566 kb on + strand, within EX28DRAFT_1463at 1475.566 kb on + strand, within EX28DRAFT_1463at 1475.567 kb on - strand, within EX28DRAFT_1463at 1475.567 kb on - strand, within EX28DRAFT_1463at 1475.567 kb on - strand, within EX28DRAFT_1463at 1475.567 kb on - strand, within EX28DRAFT_1463at 1475.567 kb on - strand, within EX28DRAFT_1463at 1475.567 kb on - strand, within EX28DRAFT_1463at 1475.568 kb on + strand, within EX28DRAFT_1463at 1475.575 kb on + strand, within EX28DRAFT_1463at 1475.575 kb on + strand, within EX28DRAFT_1463

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,472,933 + +0.1
1,472,946 + -0.1
1,472,971 - -2.3
1,473,318 + -0.1
1,473,410 - EX28DRAFT_1460 0.20 -0.9
1,473,565 - EX28DRAFT_1460 0.48 -0.3
1,473,649 + EX28DRAFT_1460 0.63 +0.8
1,473,650 - EX28DRAFT_1460 0.63 +0.1
1,473,771 + EX28DRAFT_1460 0.84 +0.1
1,473,771 + EX28DRAFT_1460 0.84 -0.2
1,473,907 + +0.1
1,473,907 + +1.2
1,473,908 - +0.1
1,473,908 - -0.0
1,473,908 - -0.2
1,473,971 + EX28DRAFT_1461 0.13 +0.3
1,474,070 + EX28DRAFT_1461 0.27 -0.9
1,474,147 + EX28DRAFT_1461 0.38 -0.6
1,474,153 + EX28DRAFT_1461 0.39 -0.6
1,474,297 + EX28DRAFT_1461 0.59 +1.9
1,474,298 - EX28DRAFT_1461 0.59 -0.3
1,474,300 + EX28DRAFT_1461 0.60 -0.2
1,474,300 + EX28DRAFT_1461 0.60 -0.6
1,474,301 - EX28DRAFT_1461 0.60 +0.1
1,474,576 + -0.9
1,474,590 + -0.2
1,474,621 + +0.3
1,474,632 - +0.3
1,474,661 + -0.1
1,474,686 + -0.0
1,474,726 - EX28DRAFT_1462 0.13 -1.4
1,474,992 - -0.4
1,474,998 + -0.4
1,474,998 + -0.3
1,474,999 - +0.4
1,474,999 - -0.1
1,475,060 - +0.7
1,475,063 - -0.3
1,475,063 - -0.3
1,475,066 + -0.4
1,475,067 - -0.3
1,475,070 + +0.2
1,475,071 - -0.1
1,475,073 - -0.2
1,475,362 + EX28DRAFT_1463 0.11 +0.2
1,475,404 - EX28DRAFT_1463 0.13 +1.6
1,475,413 - EX28DRAFT_1463 0.13 -0.4
1,475,566 + EX28DRAFT_1463 0.20 +0.5
1,475,566 + EX28DRAFT_1463 0.20 -0.3
1,475,566 + EX28DRAFT_1463 0.20 -0.3
1,475,567 - EX28DRAFT_1463 0.20 -0.8
1,475,567 - EX28DRAFT_1463 0.20 +0.3
1,475,567 - EX28DRAFT_1463 0.20 +0.1
1,475,567 - EX28DRAFT_1463 0.20 -1.1
1,475,567 - EX28DRAFT_1463 0.20 +0.1
1,475,567 - EX28DRAFT_1463 0.20 -1.4
1,475,568 + EX28DRAFT_1463 0.20 +0.2
1,475,575 + EX28DRAFT_1463 0.20 -0.3
1,475,575 + EX28DRAFT_1463 0.20 +0.9

Or see this region's nucleotide sequence