Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1325

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1322 and EX28DRAFT_1323 are separated by 11 nucleotidesEX28DRAFT_1323 and EX28DRAFT_1324 overlap by 4 nucleotidesEX28DRAFT_1324 and EX28DRAFT_1325 overlap by 4 nucleotidesEX28DRAFT_1325 and EX28DRAFT_1326 are separated by 118 nucleotidesEX28DRAFT_1326 and EX28DRAFT_1327 are separated by 1 nucleotides EX28DRAFT_1322: EX28DRAFT_1322 - hypothetical protein, at 1,321,871 to 1,322,581 _1322 EX28DRAFT_1323: EX28DRAFT_1323 - Protein of unknown function (DUF1317), at 1,322,593 to 1,322,745 _1323 EX28DRAFT_1324: EX28DRAFT_1324 - Methyltransferase domain, at 1,322,742 to 1,323,224 _1324 EX28DRAFT_1325: EX28DRAFT_1325 - Transcriptional activator, adenine-specific DNA methyltransferase, at 1,323,221 to 1,323,880 _1325 EX28DRAFT_1326: EX28DRAFT_1326 - transcriptional regulator, TraR/DksA family, at 1,323,999 to 1,324,214 _1326 EX28DRAFT_1327: EX28DRAFT_1327 - hypothetical protein, at 1,324,216 to 1,324,740 _1327 Position (kb) 1323 1324Strain fitness (log2 ratio) -2 -1 0 1at 1322.222 kb on - strand, within EX28DRAFT_1322at 1322.282 kb on + strand, within EX28DRAFT_1322at 1322.282 kb on + strand, within EX28DRAFT_1322at 1322.330 kb on + strand, within EX28DRAFT_1322at 1322.331 kb on - strand, within EX28DRAFT_1322at 1322.332 kb on + strand, within EX28DRAFT_1322at 1322.474 kb on - strand, within EX28DRAFT_1322at 1322.569 kb on + strandat 1322.592 kb on + strandat 1322.593 kb on - strandat 1322.649 kb on + strand, within EX28DRAFT_1323at 1322.875 kb on + strand, within EX28DRAFT_1324at 1322.888 kb on + strand, within EX28DRAFT_1324at 1322.889 kb on - strand, within EX28DRAFT_1324at 1322.890 kb on + strand, within EX28DRAFT_1324at 1323.125 kb on + strand, within EX28DRAFT_1324at 1323.158 kb on - strand, within EX28DRAFT_1324at 1323.241 kb on + strandat 1323.241 kb on + strandat 1323.245 kb on + strandat 1323.246 kb on - strandat 1323.267 kb on - strandat 1323.386 kb on + strand, within EX28DRAFT_1325at 1323.665 kb on - strand, within EX28DRAFT_1325at 1323.672 kb on + strand, within EX28DRAFT_1325at 1323.676 kb on - strand, within EX28DRAFT_1325at 1323.676 kb on - strand, within EX28DRAFT_1325at 1323.676 kb on - strand, within EX28DRAFT_1325at 1323.676 kb on - strand, within EX28DRAFT_1325at 1323.677 kb on + strand, within EX28DRAFT_1325at 1323.678 kb on - strand, within EX28DRAFT_1325at 1323.678 kb on - strand, within EX28DRAFT_1325at 1323.678 kb on - strand, within EX28DRAFT_1325at 1323.915 kb on - strandat 1323.947 kb on + strandat 1323.973 kb on - strandat 1324.213 kb on - strandat 1324.236 kb on - strandat 1324.302 kb on - strand, within EX28DRAFT_1327at 1324.323 kb on - strand, within EX28DRAFT_1327at 1324.340 kb on - strand, within EX28DRAFT_1327at 1324.347 kb on - strand, within EX28DRAFT_1327at 1324.363 kb on - strand, within EX28DRAFT_1327at 1324.405 kb on + strand, within EX28DRAFT_1327at 1324.422 kb on - strand, within EX28DRAFT_1327at 1324.422 kb on - strand, within EX28DRAFT_1327at 1324.440 kb on + strand, within EX28DRAFT_1327at 1324.440 kb on + strand, within EX28DRAFT_1327at 1324.441 kb on - strand, within EX28DRAFT_1327at 1324.474 kb on - strand, within EX28DRAFT_1327at 1324.479 kb on + strand, within EX28DRAFT_1327at 1324.480 kb on - strand, within EX28DRAFT_1327at 1324.480 kb on - strand, within EX28DRAFT_1327at 1324.484 kb on - strand, within EX28DRAFT_1327at 1324.558 kb on + strand, within EX28DRAFT_1327at 1324.558 kb on + strand, within EX28DRAFT_1327at 1324.621 kb on + strand, within EX28DRAFT_1327at 1324.622 kb on - strand, within EX28DRAFT_1327at 1324.656 kb on + strand, within EX28DRAFT_1327at 1324.855 kb on + strandat 1324.855 kb on + strandat 1324.857 kb on + strandat 1324.857 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
1,322,222 - EX28DRAFT_1322 0.49 +0.5
1,322,282 + EX28DRAFT_1322 0.58 -0.9
1,322,282 + EX28DRAFT_1322 0.58 -0.2
1,322,330 + EX28DRAFT_1322 0.65 -0.2
1,322,331 - EX28DRAFT_1322 0.65 +0.2
1,322,332 + EX28DRAFT_1322 0.65 +0.1
1,322,474 - EX28DRAFT_1322 0.85 +0.8
1,322,569 + +0.1
1,322,592 + -0.8
1,322,593 - +0.2
1,322,649 + EX28DRAFT_1323 0.37 +0.0
1,322,875 + EX28DRAFT_1324 0.28 -0.4
1,322,888 + EX28DRAFT_1324 0.30 -0.0
1,322,889 - EX28DRAFT_1324 0.30 +0.2
1,322,890 + EX28DRAFT_1324 0.31 +0.5
1,323,125 + EX28DRAFT_1324 0.79 +0.2
1,323,158 - EX28DRAFT_1324 0.86 +0.1
1,323,241 + -0.0
1,323,241 + +0.6
1,323,245 + -0.3
1,323,246 - -0.3
1,323,267 - +0.1
1,323,386 + EX28DRAFT_1325 0.25 +0.3
1,323,665 - EX28DRAFT_1325 0.67 -1.9
1,323,672 + EX28DRAFT_1325 0.68 +0.1
1,323,676 - EX28DRAFT_1325 0.69 -0.1
1,323,676 - EX28DRAFT_1325 0.69 -0.9
1,323,676 - EX28DRAFT_1325 0.69 -0.0
1,323,676 - EX28DRAFT_1325 0.69 +0.8
1,323,677 + EX28DRAFT_1325 0.69 -0.7
1,323,678 - EX28DRAFT_1325 0.69 +0.3
1,323,678 - EX28DRAFT_1325 0.69 -0.5
1,323,678 - EX28DRAFT_1325 0.69 +0.7
1,323,915 - +0.4
1,323,947 + +0.8
1,323,973 - -0.8
1,324,213 - +1.1
1,324,236 - +0.3
1,324,302 - EX28DRAFT_1327 0.16 +0.5
1,324,323 - EX28DRAFT_1327 0.20 -0.4
1,324,340 - EX28DRAFT_1327 0.24 -1.3
1,324,347 - EX28DRAFT_1327 0.25 -0.1
1,324,363 - EX28DRAFT_1327 0.28 -0.2
1,324,405 + EX28DRAFT_1327 0.36 -0.2
1,324,422 - EX28DRAFT_1327 0.39 +0.4
1,324,422 - EX28DRAFT_1327 0.39 +0.5
1,324,440 + EX28DRAFT_1327 0.43 -0.2
1,324,440 + EX28DRAFT_1327 0.43 -0.0
1,324,441 - EX28DRAFT_1327 0.43 +0.1
1,324,474 - EX28DRAFT_1327 0.49 +0.3
1,324,479 + EX28DRAFT_1327 0.50 +0.5
1,324,480 - EX28DRAFT_1327 0.50 -0.4
1,324,480 - EX28DRAFT_1327 0.50 -0.2
1,324,484 - EX28DRAFT_1327 0.51 -1.6
1,324,558 + EX28DRAFT_1327 0.65 +0.1
1,324,558 + EX28DRAFT_1327 0.65 +0.6
1,324,621 + EX28DRAFT_1327 0.77 -0.6
1,324,622 - EX28DRAFT_1327 0.77 +0.6
1,324,656 + EX28DRAFT_1327 0.84 -0.3
1,324,855 + -0.3
1,324,855 + +0.1
1,324,857 + -0.2
1,324,857 + -0.4

Or see this region's nucleotide sequence