Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1265

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1264 and EX28DRAFT_1265 are separated by 169 nucleotidesEX28DRAFT_1265 and EX28DRAFT_1266 are separated by 169 nucleotidesEX28DRAFT_1266 and EX28DRAFT_1267 are separated by 136 nucleotides EX28DRAFT_1264: EX28DRAFT_1264 - Predicted acyltransferases, at 1,280,989 to 1,282,077 _1264 EX28DRAFT_1265: EX28DRAFT_1265 - ORF6N domain, at 1,282,247 to 1,282,936 _1265 EX28DRAFT_1266: EX28DRAFT_1266 - hypothetical protein, at 1,283,106 to 1,283,414 _1266 EX28DRAFT_1267: EX28DRAFT_1267 - Predicted acyltransferases, at 1,283,551 to 1,284,624 _1267 Position (kb) 1282 1283Strain fitness (log2 ratio) -2 -1 0 1at 1281.266 kb on - strand, within EX28DRAFT_1264at 1281.267 kb on + strand, within EX28DRAFT_1264at 1281.269 kb on + strand, within EX28DRAFT_1264at 1281.294 kb on - strand, within EX28DRAFT_1264at 1281.358 kb on + strand, within EX28DRAFT_1264at 1281.922 kb on - strand, within EX28DRAFT_1264at 1281.923 kb on + strand, within EX28DRAFT_1264at 1281.974 kb on + strandat 1281.978 kb on - strandat 1281.997 kb on - strandat 1282.015 kb on + strandat 1282.025 kb on + strandat 1282.085 kb on - strandat 1282.085 kb on - strandat 1282.119 kb on + strandat 1282.176 kb on + strandat 1282.178 kb on + strandat 1282.179 kb on - strandat 1282.179 kb on - strandat 1282.203 kb on + strandat 1282.204 kb on - strandat 1282.373 kb on - strand, within EX28DRAFT_1265at 1282.373 kb on - strand, within EX28DRAFT_1265at 1282.511 kb on - strand, within EX28DRAFT_1265at 1282.623 kb on + strand, within EX28DRAFT_1265at 1282.624 kb on - strand, within EX28DRAFT_1265at 1282.624 kb on - strand, within EX28DRAFT_1265at 1282.627 kb on + strand, within EX28DRAFT_1265at 1282.627 kb on + strand, within EX28DRAFT_1265at 1282.628 kb on - strand, within EX28DRAFT_1265at 1282.717 kb on + strand, within EX28DRAFT_1265at 1282.717 kb on + strand, within EX28DRAFT_1265at 1282.718 kb on - strand, within EX28DRAFT_1265at 1282.793 kb on - strand, within EX28DRAFT_1265at 1282.959 kb on + strandat 1283.011 kb on - strandat 1283.021 kb on - strandat 1283.076 kb on - strandat 1283.148 kb on - strand, within EX28DRAFT_1266at 1283.148 kb on - strand, within EX28DRAFT_1266at 1283.148 kb on - strand, within EX28DRAFT_1266at 1283.148 kb on - strand, within EX28DRAFT_1266at 1283.239 kb on + strand, within EX28DRAFT_1266at 1283.320 kb on + strand, within EX28DRAFT_1266at 1283.321 kb on - strand, within EX28DRAFT_1266at 1283.452 kb on + strandat 1283.464 kb on + strandat 1283.468 kb on + strandat 1283.469 kb on - strandat 1283.509 kb on + strandat 1283.509 kb on + strandat 1283.509 kb on + strandat 1283.510 kb on - strandat 1283.572 kb on + strandat 1283.605 kb on + strandat 1283.606 kb on - strandat 1283.648 kb on + strandat 1283.701 kb on - strand, within EX28DRAFT_1267at 1283.710 kb on + strand, within EX28DRAFT_1267at 1283.731 kb on + strand, within EX28DRAFT_1267at 1283.731 kb on + strand, within EX28DRAFT_1267at 1283.732 kb on - strand, within EX28DRAFT_1267at 1283.733 kb on + strand, within EX28DRAFT_1267at 1283.742 kb on + strand, within EX28DRAFT_1267at 1283.742 kb on + strand, within EX28DRAFT_1267at 1283.806 kb on + strand, within EX28DRAFT_1267at 1283.806 kb on + strand, within EX28DRAFT_1267at 1283.806 kb on + strand, within EX28DRAFT_1267at 1283.807 kb on - strand, within EX28DRAFT_1267at 1283.807 kb on - strand, within EX28DRAFT_1267at 1283.807 kb on - strand, within EX28DRAFT_1267at 1283.838 kb on - strand, within EX28DRAFT_1267at 1283.838 kb on - strand, within EX28DRAFT_1267at 1283.862 kb on + strand, within EX28DRAFT_1267at 1283.862 kb on + strand, within EX28DRAFT_1267at 1283.863 kb on - strand, within EX28DRAFT_1267at 1283.863 kb on - strand, within EX28DRAFT_1267at 1283.863 kb on - strand, within EX28DRAFT_1267at 1283.891 kb on - strand, within EX28DRAFT_1267at 1283.891 kb on - strand, within EX28DRAFT_1267at 1283.891 kb on - strand, within EX28DRAFT_1267

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
1,281,266 - EX28DRAFT_1264 0.25 -0.2
1,281,267 + EX28DRAFT_1264 0.26 +0.3
1,281,269 + EX28DRAFT_1264 0.26 +0.6
1,281,294 - EX28DRAFT_1264 0.28 +0.2
1,281,358 + EX28DRAFT_1264 0.34 +0.0
1,281,922 - EX28DRAFT_1264 0.86 -0.4
1,281,923 + EX28DRAFT_1264 0.86 -0.4
1,281,974 + +0.1
1,281,978 - +0.1
1,281,997 - +0.6
1,282,015 + +0.3
1,282,025 + +0.6
1,282,085 - -0.1
1,282,085 - +0.5
1,282,119 + -0.6
1,282,176 + -1.0
1,282,178 + -0.5
1,282,179 - +0.0
1,282,179 - +0.3
1,282,203 + -1.9
1,282,204 - +0.2
1,282,373 - EX28DRAFT_1265 0.18 -0.3
1,282,373 - EX28DRAFT_1265 0.18 +0.3
1,282,511 - EX28DRAFT_1265 0.38 -0.4
1,282,623 + EX28DRAFT_1265 0.54 +0.2
1,282,624 - EX28DRAFT_1265 0.55 -1.5
1,282,624 - EX28DRAFT_1265 0.55 -0.0
1,282,627 + EX28DRAFT_1265 0.55 +0.9
1,282,627 + EX28DRAFT_1265 0.55 -0.1
1,282,628 - EX28DRAFT_1265 0.55 +1.6
1,282,717 + EX28DRAFT_1265 0.68 +0.6
1,282,717 + EX28DRAFT_1265 0.68 -0.4
1,282,718 - EX28DRAFT_1265 0.68 +0.6
1,282,793 - EX28DRAFT_1265 0.79 +0.6
1,282,959 + +0.1
1,283,011 - +0.0
1,283,021 - +0.1
1,283,076 - -0.6
1,283,148 - EX28DRAFT_1266 0.14 -0.1
1,283,148 - EX28DRAFT_1266 0.14 -0.4
1,283,148 - EX28DRAFT_1266 0.14 -0.9
1,283,148 - EX28DRAFT_1266 0.14 +0.1
1,283,239 + EX28DRAFT_1266 0.43 +0.1
1,283,320 + EX28DRAFT_1266 0.69 -0.4
1,283,321 - EX28DRAFT_1266 0.70 -1.1
1,283,452 + +0.3
1,283,464 + -0.1
1,283,468 + +0.5
1,283,469 - +0.8
1,283,509 + -0.6
1,283,509 + -0.8
1,283,509 + +0.4
1,283,510 - -0.3
1,283,572 + +1.1
1,283,605 + +0.4
1,283,606 - -0.3
1,283,648 + -0.9
1,283,701 - EX28DRAFT_1267 0.14 -0.6
1,283,710 + EX28DRAFT_1267 0.15 -0.4
1,283,731 + EX28DRAFT_1267 0.17 -0.3
1,283,731 + EX28DRAFT_1267 0.17 -0.2
1,283,732 - EX28DRAFT_1267 0.17 +0.7
1,283,733 + EX28DRAFT_1267 0.17 +0.8
1,283,742 + EX28DRAFT_1267 0.18 -0.2
1,283,742 + EX28DRAFT_1267 0.18 +0.1
1,283,806 + EX28DRAFT_1267 0.24 +0.6
1,283,806 + EX28DRAFT_1267 0.24 -0.3
1,283,806 + EX28DRAFT_1267 0.24 +0.3
1,283,807 - EX28DRAFT_1267 0.24 -0.3
1,283,807 - EX28DRAFT_1267 0.24 -0.6
1,283,807 - EX28DRAFT_1267 0.24 +0.2
1,283,838 - EX28DRAFT_1267 0.27 -0.2
1,283,838 - EX28DRAFT_1267 0.27 -0.5
1,283,862 + EX28DRAFT_1267 0.29 -0.3
1,283,862 + EX28DRAFT_1267 0.29 +0.1
1,283,863 - EX28DRAFT_1267 0.29 +1.0
1,283,863 - EX28DRAFT_1267 0.29 +0.5
1,283,863 - EX28DRAFT_1267 0.29 +0.3
1,283,891 - EX28DRAFT_1267 0.32 +0.3
1,283,891 - EX28DRAFT_1267 0.32 +1.1
1,283,891 - EX28DRAFT_1267 0.32 +0.2

Or see this region's nucleotide sequence