Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1257

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1256 and EX28DRAFT_1257 are separated by 160 nucleotidesEX28DRAFT_1257 and EX28DRAFT_1258 are separated by 28 nucleotidesEX28DRAFT_1258 and EX28DRAFT_1259 are separated by 345 nucleotides EX28DRAFT_1256: EX28DRAFT_1256 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 1,273,657 to 1,275,348 _1256 EX28DRAFT_1257: EX28DRAFT_1257 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 1,275,509 to 1,276,630 _1257 EX28DRAFT_1258: EX28DRAFT_1258 - Uncharacterized protein conserved in bacteria, at 1,276,659 to 1,276,934 _1258 EX28DRAFT_1259: EX28DRAFT_1259 - Uncharacterized conserved protein, at 1,277,280 to 1,277,948 _1259 Position (kb) 1275 1276 1277Strain fitness (log2 ratio) -1 0 1at 1274.628 kb on + strand, within EX28DRAFT_1256at 1274.659 kb on + strand, within EX28DRAFT_1256at 1274.868 kb on + strand, within EX28DRAFT_1256at 1274.927 kb on + strand, within EX28DRAFT_1256at 1274.927 kb on + strand, within EX28DRAFT_1256at 1274.927 kb on + strand, within EX28DRAFT_1256at 1274.928 kb on - strand, within EX28DRAFT_1256at 1274.928 kb on - strand, within EX28DRAFT_1256at 1274.997 kb on + strand, within EX28DRAFT_1256at 1274.997 kb on + strand, within EX28DRAFT_1256at 1274.997 kb on + strand, within EX28DRAFT_1256at 1275.337 kb on - strandat 1275.337 kb on - strandat 1275.366 kb on + strandat 1275.366 kb on + strandat 1275.370 kb on + strandat 1275.370 kb on + strandat 1275.370 kb on + strandat 1275.370 kb on + strandat 1275.370 kb on + strandat 1275.370 kb on + strandat 1275.370 kb on + strandat 1275.371 kb on - strandat 1275.371 kb on - strandat 1275.394 kb on + strandat 1275.398 kb on + strandat 1275.421 kb on + strandat 1275.427 kb on - strandat 1275.510 kb on + strandat 1275.536 kb on - strandat 1275.740 kb on - strand, within EX28DRAFT_1257at 1275.773 kb on - strand, within EX28DRAFT_1257at 1275.773 kb on - strand, within EX28DRAFT_1257at 1275.988 kb on + strand, within EX28DRAFT_1257at 1275.988 kb on + strand, within EX28DRAFT_1257at 1276.198 kb on - strand, within EX28DRAFT_1257at 1276.198 kb on - strand, within EX28DRAFT_1257at 1276.224 kb on + strand, within EX28DRAFT_1257at 1276.224 kb on + strand, within EX28DRAFT_1257at 1276.225 kb on - strand, within EX28DRAFT_1257at 1276.225 kb on - strand, within EX28DRAFT_1257at 1276.230 kb on + strand, within EX28DRAFT_1257at 1276.230 kb on + strand, within EX28DRAFT_1257at 1276.230 kb on + strand, within EX28DRAFT_1257at 1276.248 kb on + strand, within EX28DRAFT_1257at 1276.249 kb on - strand, within EX28DRAFT_1257at 1276.342 kb on + strand, within EX28DRAFT_1257at 1276.343 kb on - strand, within EX28DRAFT_1257at 1276.343 kb on - strand, within EX28DRAFT_1257at 1276.365 kb on + strand, within EX28DRAFT_1257at 1276.376 kb on - strand, within EX28DRAFT_1257at 1276.493 kb on - strand, within EX28DRAFT_1257at 1276.661 kb on - strandat 1276.665 kb on + strandat 1276.670 kb on - strandat 1276.965 kb on + strandat 1276.966 kb on - strandat 1277.030 kb on - strandat 1277.034 kb on - strandat 1277.052 kb on + strandat 1277.053 kb on - strandat 1277.053 kb on - strandat 1277.053 kb on - strandat 1277.169 kb on + strandat 1277.170 kb on - strandat 1277.188 kb on + strandat 1277.210 kb on - strandat 1277.210 kb on - strandat 1277.216 kb on + strandat 1277.235 kb on + strandat 1277.235 kb on + strandat 1277.236 kb on - strandat 1277.240 kb on - strandat 1277.240 kb on - strandat 1277.240 kb on - strandat 1277.249 kb on - strandat 1277.250 kb on + strandat 1277.250 kb on + strandat 1277.279 kb on + strandat 1277.279 kb on + strandat 1277.279 kb on + strandat 1277.320 kb on - strandat 1277.328 kb on + strandat 1277.328 kb on + strandat 1277.361 kb on + strand, within EX28DRAFT_1259at 1277.466 kb on + strand, within EX28DRAFT_1259at 1277.467 kb on - strand, within EX28DRAFT_1259at 1277.486 kb on + strand, within EX28DRAFT_1259at 1277.487 kb on - strand, within EX28DRAFT_1259

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,274,628 + EX28DRAFT_1256 0.57 +0.1
1,274,659 + EX28DRAFT_1256 0.59 +0.3
1,274,868 + EX28DRAFT_1256 0.72 +0.1
1,274,927 + EX28DRAFT_1256 0.75 -0.4
1,274,927 + EX28DRAFT_1256 0.75 -0.4
1,274,927 + EX28DRAFT_1256 0.75 +0.3
1,274,928 - EX28DRAFT_1256 0.75 +0.0
1,274,928 - EX28DRAFT_1256 0.75 -0.1
1,274,997 + EX28DRAFT_1256 0.79 +0.3
1,274,997 + EX28DRAFT_1256 0.79 +0.0
1,274,997 + EX28DRAFT_1256 0.79 -0.6
1,275,337 - +0.6
1,275,337 - +0.0
1,275,366 + +0.1
1,275,366 + +0.1
1,275,370 + +0.1
1,275,370 + -0.7
1,275,370 + +0.2
1,275,370 + +0.3
1,275,370 + +0.5
1,275,370 + -0.0
1,275,370 + +0.3
1,275,371 - +0.1
1,275,371 - -1.1
1,275,394 + -0.1
1,275,398 + -0.1
1,275,421 + -0.6
1,275,427 - +0.4
1,275,510 + +0.1
1,275,536 - -0.1
1,275,740 - EX28DRAFT_1257 0.21 +0.5
1,275,773 - EX28DRAFT_1257 0.24 +0.5
1,275,773 - EX28DRAFT_1257 0.24 +0.7
1,275,988 + EX28DRAFT_1257 0.43 +0.8
1,275,988 + EX28DRAFT_1257 0.43 +0.1
1,276,198 - EX28DRAFT_1257 0.61 +0.3
1,276,198 - EX28DRAFT_1257 0.61 +0.3
1,276,224 + EX28DRAFT_1257 0.64 +0.1
1,276,224 + EX28DRAFT_1257 0.64 -0.3
1,276,225 - EX28DRAFT_1257 0.64 -0.9
1,276,225 - EX28DRAFT_1257 0.64 -0.6
1,276,230 + EX28DRAFT_1257 0.64 +0.9
1,276,230 + EX28DRAFT_1257 0.64 -0.2
1,276,230 + EX28DRAFT_1257 0.64 +0.1
1,276,248 + EX28DRAFT_1257 0.66 +0.6
1,276,249 - EX28DRAFT_1257 0.66 -0.2
1,276,342 + EX28DRAFT_1257 0.74 +0.5
1,276,343 - EX28DRAFT_1257 0.74 +0.8
1,276,343 - EX28DRAFT_1257 0.74 -0.0
1,276,365 + EX28DRAFT_1257 0.76 +0.4
1,276,376 - EX28DRAFT_1257 0.77 +0.3
1,276,493 - EX28DRAFT_1257 0.88 -0.1
1,276,661 - -0.9
1,276,665 + +0.2
1,276,670 - -0.4
1,276,965 + +0.1
1,276,966 - -0.6
1,277,030 - -0.2
1,277,034 - -1.1
1,277,052 + -0.6
1,277,053 - -0.9
1,277,053 - -0.4
1,277,053 - +0.1
1,277,169 + +0.1
1,277,170 - +0.3
1,277,188 + -0.4
1,277,210 - -0.0
1,277,210 - +0.2
1,277,216 + -0.7
1,277,235 + +0.4
1,277,235 + -0.0
1,277,236 - -0.1
1,277,240 - +0.1
1,277,240 - +0.1
1,277,240 - +0.2
1,277,249 - +0.0
1,277,250 + -0.2
1,277,250 + -0.5
1,277,279 + -0.1
1,277,279 + +0.4
1,277,279 + -0.2
1,277,320 - -0.5
1,277,328 + +0.1
1,277,328 + +0.3
1,277,361 + EX28DRAFT_1259 0.12 +0.5
1,277,466 + EX28DRAFT_1259 0.28 -0.0
1,277,467 - EX28DRAFT_1259 0.28 +0.3
1,277,486 + EX28DRAFT_1259 0.31 -0.3
1,277,487 - EX28DRAFT_1259 0.31 -0.1

Or see this region's nucleotide sequence