Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1229

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1228 and EX28DRAFT_1229 are separated by 111 nucleotidesEX28DRAFT_1229 and EX28DRAFT_1230 overlap by 4 nucleotidesEX28DRAFT_1230 and EX28DRAFT_1231 are separated by 135 nucleotides EX28DRAFT_1228: EX28DRAFT_1228 - ABC-type dipeptide transport system, periplasmic component, at 1,245,872 to 1,247,467 _1228 EX28DRAFT_1229: EX28DRAFT_1229 - peptidase T, at 1,247,579 to 1,248,808 _1229 EX28DRAFT_1230: EX28DRAFT_1230 - tellurite resistance protein TehB, at 1,248,805 to 1,249,398 _1230 EX28DRAFT_1231: EX28DRAFT_1231 - Bacterial transferase hexapeptide (six repeats), at 1,249,534 to 1,250,514 _1231 Position (kb) 1247 1248 1249Strain fitness (log2 ratio) -1 0 1 2at 1246.861 kb on + strand, within EX28DRAFT_1228at 1247.064 kb on + strand, within EX28DRAFT_1228at 1247.064 kb on + strand, within EX28DRAFT_1228at 1247.171 kb on - strand, within EX28DRAFT_1228at 1247.171 kb on - strand, within EX28DRAFT_1228at 1247.343 kb on + strandat 1247.343 kb on + strandat 1247.343 kb on + strandat 1247.344 kb on - strandat 1247.345 kb on + strandat 1247.346 kb on - strandat 1247.386 kb on - strandat 1247.386 kb on - strandat 1247.526 kb on - strandat 1247.526 kb on - strandat 1247.532 kb on - strandat 1247.532 kb on - strandat 1247.815 kb on + strand, within EX28DRAFT_1229at 1248.013 kb on + strand, within EX28DRAFT_1229at 1248.368 kb on + strand, within EX28DRAFT_1229at 1248.368 kb on + strand, within EX28DRAFT_1229at 1248.369 kb on - strand, within EX28DRAFT_1229at 1248.369 kb on - strand, within EX28DRAFT_1229at 1248.369 kb on - strand, within EX28DRAFT_1229at 1248.370 kb on + strand, within EX28DRAFT_1229at 1248.371 kb on - strand, within EX28DRAFT_1229at 1248.538 kb on + strand, within EX28DRAFT_1229at 1248.539 kb on - strand, within EX28DRAFT_1229at 1248.542 kb on + strand, within EX28DRAFT_1229at 1248.542 kb on + strand, within EX28DRAFT_1229at 1248.543 kb on - strand, within EX28DRAFT_1229at 1248.550 kb on + strand, within EX28DRAFT_1229at 1248.924 kb on - strand, within EX28DRAFT_1230at 1248.927 kb on - strand, within EX28DRAFT_1230at 1249.115 kb on + strand, within EX28DRAFT_1230at 1249.149 kb on + strand, within EX28DRAFT_1230at 1249.163 kb on - strand, within EX28DRAFT_1230at 1249.365 kb on - strandat 1249.379 kb on + strandat 1249.380 kb on - strandat 1249.420 kb on - strandat 1249.505 kb on + strandat 1249.509 kb on + strandat 1249.510 kb on - strandat 1249.529 kb on + strandat 1249.594 kb on - strandat 1249.807 kb on - strand, within EX28DRAFT_1231

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,246,861 + EX28DRAFT_1228 0.62 +0.6
1,247,064 + EX28DRAFT_1228 0.75 -0.6
1,247,064 + EX28DRAFT_1228 0.75 +0.5
1,247,171 - EX28DRAFT_1228 0.81 -0.4
1,247,171 - EX28DRAFT_1228 0.81 -0.3
1,247,343 + -0.1
1,247,343 + -1.6
1,247,343 + -0.4
1,247,344 - +0.3
1,247,345 + -0.3
1,247,346 - +0.6
1,247,386 - +0.1
1,247,386 - +0.4
1,247,526 - +0.4
1,247,526 - -0.2
1,247,532 - +0.0
1,247,532 - +0.4
1,247,815 + EX28DRAFT_1229 0.19 +0.3
1,248,013 + EX28DRAFT_1229 0.35 -1.4
1,248,368 + EX28DRAFT_1229 0.64 +0.7
1,248,368 + EX28DRAFT_1229 0.64 +0.1
1,248,369 - EX28DRAFT_1229 0.64 +0.8
1,248,369 - EX28DRAFT_1229 0.64 +0.1
1,248,369 - EX28DRAFT_1229 0.64 +0.8
1,248,370 + EX28DRAFT_1229 0.64 +0.3
1,248,371 - EX28DRAFT_1229 0.64 -0.3
1,248,538 + EX28DRAFT_1229 0.78 -0.1
1,248,539 - EX28DRAFT_1229 0.78 -0.2
1,248,542 + EX28DRAFT_1229 0.78 -0.0
1,248,542 + EX28DRAFT_1229 0.78 +1.5
1,248,543 - EX28DRAFT_1229 0.78 +0.6
1,248,550 + EX28DRAFT_1229 0.79 +0.5
1,248,924 - EX28DRAFT_1230 0.20 -0.1
1,248,927 - EX28DRAFT_1230 0.21 -0.1
1,249,115 + EX28DRAFT_1230 0.52 -0.2
1,249,149 + EX28DRAFT_1230 0.58 +0.1
1,249,163 - EX28DRAFT_1230 0.60 -0.1
1,249,365 - +0.1
1,249,379 + +0.6
1,249,380 - +0.1
1,249,420 - -0.1
1,249,505 + +0.7
1,249,509 + +0.2
1,249,510 - +0.4
1,249,529 + -0.5
1,249,594 - +2.0
1,249,807 - EX28DRAFT_1231 0.28 +1.3

Or see this region's nucleotide sequence