Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1213

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1211 and EX28DRAFT_1212 are separated by 9 nucleotidesEX28DRAFT_1212 and EX28DRAFT_1213 overlap by 1 nucleotidesEX28DRAFT_1213 and EX28DRAFT_1214 overlap by 1 nucleotides EX28DRAFT_1211: EX28DRAFT_1211 - urea ABC transporter, ATP-binding protein UrtE, at 1,229,289 to 1,229,987 _1211 EX28DRAFT_1212: EX28DRAFT_1212 - urea ABC transporter, ATP-binding protein UrtD, at 1,229,997 to 1,230,794 _1212 EX28DRAFT_1213: EX28DRAFT_1213 - urea ABC transporter, permease protein UrtC, at 1,230,794 to 1,231,867 _1213 EX28DRAFT_1214: EX28DRAFT_1214 - urea ABC transporter, permease protein UrtB, at 1,231,867 to 1,233,441 _1214 Position (kb) 1230 1231 1232Strain fitness (log2 ratio) -2 -1 0 1at 1229.959 kb on + strandat 1229.960 kb on - strandat 1230.010 kb on + strandat 1230.010 kb on + strandat 1230.011 kb on - strandat 1230.483 kb on - strand, within EX28DRAFT_1212at 1230.548 kb on - strand, within EX28DRAFT_1212at 1230.774 kb on + strandat 1230.796 kb on - strandat 1230.796 kb on - strandat 1231.053 kb on + strand, within EX28DRAFT_1213at 1231.054 kb on - strand, within EX28DRAFT_1213at 1231.054 kb on - strand, within EX28DRAFT_1213at 1231.054 kb on - strand, within EX28DRAFT_1213at 1231.399 kb on - strand, within EX28DRAFT_1213at 1231.399 kb on - strand, within EX28DRAFT_1213at 1231.546 kb on + strand, within EX28DRAFT_1213at 1231.547 kb on - strand, within EX28DRAFT_1213at 1231.587 kb on + strand, within EX28DRAFT_1213at 1231.587 kb on + strand, within EX28DRAFT_1213at 1231.587 kb on + strand, within EX28DRAFT_1213at 1231.587 kb on + strand, within EX28DRAFT_1213at 1231.587 kb on + strand, within EX28DRAFT_1213at 1231.588 kb on - strand, within EX28DRAFT_1213at 1231.778 kb on + strandat 1231.779 kb on - strandat 1231.921 kb on - strandat 1231.998 kb on + strandat 1232.082 kb on - strand, within EX28DRAFT_1214at 1232.082 kb on - strand, within EX28DRAFT_1214at 1232.281 kb on - strand, within EX28DRAFT_1214at 1232.483 kb on + strand, within EX28DRAFT_1214at 1232.484 kb on - strand, within EX28DRAFT_1214at 1232.567 kb on + strand, within EX28DRAFT_1214at 1232.859 kb on + strand, within EX28DRAFT_1214at 1232.860 kb on - strand, within EX28DRAFT_1214

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,229,959 + +0.1
1,229,960 - +0.5
1,230,010 + -0.1
1,230,010 + +1.1
1,230,011 - -0.2
1,230,483 - EX28DRAFT_1212 0.61 +0.1
1,230,548 - EX28DRAFT_1212 0.69 +0.3
1,230,774 + -0.1
1,230,796 - +0.2
1,230,796 - -1.6
1,231,053 + EX28DRAFT_1213 0.24 -0.7
1,231,054 - EX28DRAFT_1213 0.24 -0.1
1,231,054 - EX28DRAFT_1213 0.24 +1.1
1,231,054 - EX28DRAFT_1213 0.24 +1.0
1,231,399 - EX28DRAFT_1213 0.56 +0.2
1,231,399 - EX28DRAFT_1213 0.56 -0.0
1,231,546 + EX28DRAFT_1213 0.70 +0.2
1,231,547 - EX28DRAFT_1213 0.70 +0.1
1,231,587 + EX28DRAFT_1213 0.74 -0.3
1,231,587 + EX28DRAFT_1213 0.74 +1.0
1,231,587 + EX28DRAFT_1213 0.74 +0.9
1,231,587 + EX28DRAFT_1213 0.74 -0.6
1,231,587 + EX28DRAFT_1213 0.74 -0.2
1,231,588 - EX28DRAFT_1213 0.74 -0.0
1,231,778 + -0.4
1,231,779 - +0.7
1,231,921 - -0.3
1,231,998 + -0.0
1,232,082 - EX28DRAFT_1214 0.14 -0.5
1,232,082 - EX28DRAFT_1214 0.14 -0.1
1,232,281 - EX28DRAFT_1214 0.26 -0.8
1,232,483 + EX28DRAFT_1214 0.39 -0.1
1,232,484 - EX28DRAFT_1214 0.39 -0.9
1,232,567 + EX28DRAFT_1214 0.44 +0.9
1,232,859 + EX28DRAFT_1214 0.63 -2.1
1,232,860 - EX28DRAFT_1214 0.63 +0.9

Or see this region's nucleotide sequence