Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1211 and EX28DRAFT_1212 are separated by 9 nucleotides EX28DRAFT_1212 and EX28DRAFT_1213 overlap by 1 nucleotides EX28DRAFT_1213 and EX28DRAFT_1214 overlap by 1 nucleotides
EX28DRAFT_1211: EX28DRAFT_1211 - urea ABC transporter, ATP-binding protein UrtE, at 1,229,289 to 1,229,987
_1211
EX28DRAFT_1212: EX28DRAFT_1212 - urea ABC transporter, ATP-binding protein UrtD, at 1,229,997 to 1,230,794
_1212
EX28DRAFT_1213: EX28DRAFT_1213 - urea ABC transporter, permease protein UrtC, at 1,230,794 to 1,231,867
_1213
EX28DRAFT_1214: EX28DRAFT_1214 - urea ABC transporter, permease protein UrtB, at 1,231,867 to 1,233,441
_1214
Position (kb)
1230
1231
1232 Strain fitness (log2 ratio)
-2
-1
0
1 at 1229.959 kb on + strand at 1229.960 kb on - strand at 1230.010 kb on + strand at 1230.010 kb on + strand at 1230.011 kb on - strand at 1230.483 kb on - strand, within EX28DRAFT_1212 at 1230.548 kb on - strand, within EX28DRAFT_1212 at 1230.774 kb on + strand at 1230.796 kb on - strand at 1230.796 kb on - strand at 1231.053 kb on + strand, within EX28DRAFT_1213 at 1231.054 kb on - strand, within EX28DRAFT_1213 at 1231.054 kb on - strand, within EX28DRAFT_1213 at 1231.054 kb on - strand, within EX28DRAFT_1213 at 1231.399 kb on - strand, within EX28DRAFT_1213 at 1231.399 kb on - strand, within EX28DRAFT_1213 at 1231.546 kb on + strand, within EX28DRAFT_1213 at 1231.547 kb on - strand, within EX28DRAFT_1213 at 1231.587 kb on + strand, within EX28DRAFT_1213 at 1231.587 kb on + strand, within EX28DRAFT_1213 at 1231.587 kb on + strand, within EX28DRAFT_1213 at 1231.587 kb on + strand, within EX28DRAFT_1213 at 1231.587 kb on + strand, within EX28DRAFT_1213 at 1231.588 kb on - strand, within EX28DRAFT_1213 at 1231.778 kb on + strand at 1231.779 kb on - strand at 1231.921 kb on - strand at 1231.998 kb on + strand at 1232.082 kb on - strand, within EX28DRAFT_1214 at 1232.082 kb on - strand, within EX28DRAFT_1214 at 1232.281 kb on - strand, within EX28DRAFT_1214 at 1232.483 kb on + strand, within EX28DRAFT_1214 at 1232.484 kb on - strand, within EX28DRAFT_1214 at 1232.567 kb on + strand, within EX28DRAFT_1214 at 1232.859 kb on + strand, within EX28DRAFT_1214 at 1232.860 kb on - strand, within EX28DRAFT_1214
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,229,959 + +0.1 1,229,960 - +0.5 1,230,010 + -0.1 1,230,010 + +1.1 1,230,011 - -0.2 1,230,483 - EX28DRAFT_1212 0.61 +0.1 1,230,548 - EX28DRAFT_1212 0.69 +0.3 1,230,774 + -0.1 1,230,796 - +0.2 1,230,796 - -1.6 1,231,053 + EX28DRAFT_1213 0.24 -0.7 1,231,054 - EX28DRAFT_1213 0.24 -0.1 1,231,054 - EX28DRAFT_1213 0.24 +1.1 1,231,054 - EX28DRAFT_1213 0.24 +1.0 1,231,399 - EX28DRAFT_1213 0.56 +0.2 1,231,399 - EX28DRAFT_1213 0.56 -0.0 1,231,546 + EX28DRAFT_1213 0.70 +0.2 1,231,547 - EX28DRAFT_1213 0.70 +0.1 1,231,587 + EX28DRAFT_1213 0.74 -0.3 1,231,587 + EX28DRAFT_1213 0.74 +1.0 1,231,587 + EX28DRAFT_1213 0.74 +0.9 1,231,587 + EX28DRAFT_1213 0.74 -0.6 1,231,587 + EX28DRAFT_1213 0.74 -0.2 1,231,588 - EX28DRAFT_1213 0.74 -0.0 1,231,778 + -0.4 1,231,779 - +0.7 1,231,921 - -0.3 1,231,998 + -0.0 1,232,082 - EX28DRAFT_1214 0.14 -0.5 1,232,082 - EX28DRAFT_1214 0.14 -0.1 1,232,281 - EX28DRAFT_1214 0.26 -0.8 1,232,483 + EX28DRAFT_1214 0.39 -0.1 1,232,484 - EX28DRAFT_1214 0.39 -0.9 1,232,567 + EX28DRAFT_1214 0.44 +0.9 1,232,859 + EX28DRAFT_1214 0.63 -2.1 1,232,860 - EX28DRAFT_1214 0.63 +0.9
Or see this region's nucleotide sequence