Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1157 and EX28DRAFT_1158 are separated by 2 nucleotides EX28DRAFT_1158 and EX28DRAFT_1159 are separated by 199 nucleotides EX28DRAFT_1159 and EX28DRAFT_1160 overlap by 4 nucleotides EX28DRAFT_1160 and EX28DRAFT_1161 are separated by 9 nucleotides
EX28DRAFT_1157: EX28DRAFT_1157 - glycogen debranching enzyme GlgX, at 1,177,062 to 1,179,137
_1157
EX28DRAFT_1158: EX28DRAFT_1158 - Predicted transcription regulator, contains HTH domain (MarR family), at 1,179,140 to 1,179,685
_1158
EX28DRAFT_1159: EX28DRAFT_1159 - Predicted membrane protein, at 1,179,885 to 1,180,607
_1159
EX28DRAFT_1160: EX28DRAFT_1160 - Predicted membrane protein, at 1,180,604 to 1,181,590
_1160
EX28DRAFT_1161: EX28DRAFT_1161 - Protein of unknown function (DUF2891), at 1,181,600 to 1,182,595
_1161
Position (kb)
1179
1180
1181 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1179.045 kb on - strand at 1179.045 kb on - strand at 1179.088 kb on + strand at 1179.094 kb on - strand at 1179.094 kb on - strand at 1179.113 kb on + strand at 1179.114 kb on - strand at 1179.114 kb on - strand at 1179.135 kb on + strand at 1179.387 kb on + strand, within EX28DRAFT_1158 at 1179.388 kb on - strand, within EX28DRAFT_1158 at 1179.388 kb on - strand, within EX28DRAFT_1158 at 1179.415 kb on + strand, within EX28DRAFT_1158 at 1179.416 kb on - strand, within EX28DRAFT_1158 at 1179.541 kb on + strand, within EX28DRAFT_1158 at 1179.541 kb on + strand, within EX28DRAFT_1158 at 1179.686 kb on - strand at 1179.773 kb on + strand at 1179.774 kb on - strand at 1179.896 kb on + strand at 1179.897 kb on - strand at 1179.897 kb on - strand at 1179.897 kb on - strand at 1180.110 kb on + strand, within EX28DRAFT_1159 at 1180.176 kb on - strand, within EX28DRAFT_1159 at 1180.188 kb on + strand, within EX28DRAFT_1159 at 1180.189 kb on - strand, within EX28DRAFT_1159 at 1180.302 kb on + strand, within EX28DRAFT_1159 at 1180.388 kb on + strand, within EX28DRAFT_1159 at 1180.389 kb on - strand, within EX28DRAFT_1159 at 1180.394 kb on + strand, within EX28DRAFT_1159 at 1180.445 kb on + strand, within EX28DRAFT_1159 at 1180.446 kb on - strand, within EX28DRAFT_1159 at 1180.469 kb on + strand, within EX28DRAFT_1159 at 1180.511 kb on + strand, within EX28DRAFT_1159 at 1180.511 kb on + strand, within EX28DRAFT_1159 at 1180.518 kb on - strand, within EX28DRAFT_1159 at 1180.638 kb on - strand at 1180.868 kb on - strand, within EX28DRAFT_1160 at 1180.868 kb on - strand, within EX28DRAFT_1160 at 1180.868 kb on - strand, within EX28DRAFT_1160 at 1180.868 kb on - strand, within EX28DRAFT_1160 at 1181.187 kb on + strand, within EX28DRAFT_1160 at 1181.204 kb on - strand, within EX28DRAFT_1160 at 1181.368 kb on + strand, within EX28DRAFT_1160 at 1181.500 kb on + strand at 1181.501 kb on - strand at 1181.501 kb on - strand at 1181.504 kb on + strand at 1181.505 kb on - strand at 1181.505 kb on - strand at 1181.505 kb on - strand at 1181.570 kb on + strand at 1181.571 kb on - strand at 1181.571 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,179,045 - +0.7 1,179,045 - -0.5 1,179,088 + -0.1 1,179,094 - +0.2 1,179,094 - +0.1 1,179,113 + -0.2 1,179,114 - -0.6 1,179,114 - -0.5 1,179,135 + +0.3 1,179,387 + EX28DRAFT_1158 0.45 +0.4 1,179,388 - EX28DRAFT_1158 0.45 -1.1 1,179,388 - EX28DRAFT_1158 0.45 -0.2 1,179,415 + EX28DRAFT_1158 0.50 -0.2 1,179,416 - EX28DRAFT_1158 0.51 -0.7 1,179,541 + EX28DRAFT_1158 0.73 -0.3 1,179,541 + EX28DRAFT_1158 0.73 -1.9 1,179,686 - -0.4 1,179,773 + +0.3 1,179,774 - +0.4 1,179,896 + +0.3 1,179,897 - -0.1 1,179,897 - +0.5 1,179,897 - +0.1 1,180,110 + EX28DRAFT_1159 0.31 -0.2 1,180,176 - EX28DRAFT_1159 0.40 -0.6 1,180,188 + EX28DRAFT_1159 0.42 +0.5 1,180,189 - EX28DRAFT_1159 0.42 +0.7 1,180,302 + EX28DRAFT_1159 0.58 -0.2 1,180,388 + EX28DRAFT_1159 0.70 +0.1 1,180,389 - EX28DRAFT_1159 0.70 +0.2 1,180,394 + EX28DRAFT_1159 0.70 +0.9 1,180,445 + EX28DRAFT_1159 0.77 -0.1 1,180,446 - EX28DRAFT_1159 0.78 +0.4 1,180,469 + EX28DRAFT_1159 0.81 +0.3 1,180,511 + EX28DRAFT_1159 0.87 -0.5 1,180,511 + EX28DRAFT_1159 0.87 +0.0 1,180,518 - EX28DRAFT_1159 0.88 -0.4 1,180,638 - +1.1 1,180,868 - EX28DRAFT_1160 0.27 +0.4 1,180,868 - EX28DRAFT_1160 0.27 -0.6 1,180,868 - EX28DRAFT_1160 0.27 +0.0 1,180,868 - EX28DRAFT_1160 0.27 -0.2 1,181,187 + EX28DRAFT_1160 0.59 -0.1 1,181,204 - EX28DRAFT_1160 0.61 +0.2 1,181,368 + EX28DRAFT_1160 0.77 -0.7 1,181,500 + +1.5 1,181,501 - -0.1 1,181,501 - +0.2 1,181,504 + -0.1 1,181,505 - -0.0 1,181,505 - +0.2 1,181,505 - -0.3 1,181,570 + +2.1 1,181,571 - +0.6 1,181,571 - +0.1
Or see this region's nucleotide sequence