Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1026 and EX28DRAFT_1027 are separated by 17 nucleotides EX28DRAFT_1027 and EX28DRAFT_1028 are separated by 1 nucleotides EX28DRAFT_1028 and EX28DRAFT_1029 overlap by 11 nucleotides
EX28DRAFT_1026: EX28DRAFT_1026 - Spermidine/putrescine-binding periplasmic protein, at 1,033,201 to 1,034,346
_1026
EX28DRAFT_1027: EX28DRAFT_1027 - ABC-type spermidine/putrescine transport systems, ATPase components, at 1,034,364 to 1,035,377
_1027
EX28DRAFT_1028: EX28DRAFT_1028 - ABC-type spermidine/putrescine transport system, permease component I, at 1,035,379 to 1,036,323
_1028
EX28DRAFT_1029: EX28DRAFT_1029 - ABC-type spermidine/putrescine transport system, permease component II, at 1,036,313 to 1,037,119
_1029
Position (kb)
1034
1035
1036 Strain fitness (log2 ratio)
-1
0
1 at 1033.462 kb on + strand, within EX28DRAFT_1026 at 1033.504 kb on - strand, within EX28DRAFT_1026 at 1033.504 kb on - strand, within EX28DRAFT_1026 at 1033.528 kb on - strand, within EX28DRAFT_1026 at 1033.543 kb on - strand, within EX28DRAFT_1026 at 1033.651 kb on + strand, within EX28DRAFT_1026 at 1033.651 kb on + strand, within EX28DRAFT_1026 at 1033.651 kb on + strand, within EX28DRAFT_1026 at 1033.651 kb on + strand, within EX28DRAFT_1026 at 1033.652 kb on - strand, within EX28DRAFT_1026 at 1033.753 kb on + strand, within EX28DRAFT_1026 at 1033.768 kb on + strand, within EX28DRAFT_1026 at 1033.768 kb on + strand, within EX28DRAFT_1026 at 1033.768 kb on + strand, within EX28DRAFT_1026 at 1033.769 kb on - strand, within EX28DRAFT_1026 at 1033.819 kb on - strand, within EX28DRAFT_1026 at 1033.822 kb on - strand, within EX28DRAFT_1026 at 1034.098 kb on + strand, within EX28DRAFT_1026 at 1034.098 kb on + strand, within EX28DRAFT_1026 at 1034.099 kb on - strand, within EX28DRAFT_1026 at 1034.188 kb on - strand, within EX28DRAFT_1026 at 1034.188 kb on - strand, within EX28DRAFT_1026 at 1034.300 kb on - strand at 1034.320 kb on + strand at 1034.321 kb on - strand at 1034.371 kb on - strand at 1034.403 kb on + strand at 1034.634 kb on - strand, within EX28DRAFT_1027 at 1034.634 kb on - strand, within EX28DRAFT_1027 at 1035.030 kb on + strand, within EX28DRAFT_1027 at 1035.109 kb on + strand, within EX28DRAFT_1027 at 1035.130 kb on - strand, within EX28DRAFT_1027 at 1035.150 kb on - strand, within EX28DRAFT_1027 at 1035.150 kb on - strand, within EX28DRAFT_1027 at 1035.158 kb on + strand, within EX28DRAFT_1027 at 1035.159 kb on - strand, within EX28DRAFT_1027 at 1035.208 kb on - strand, within EX28DRAFT_1027 at 1035.423 kb on - strand at 1035.511 kb on + strand, within EX28DRAFT_1028 at 1035.515 kb on + strand, within EX28DRAFT_1028 at 1035.516 kb on - strand, within EX28DRAFT_1028 at 1035.631 kb on + strand, within EX28DRAFT_1028 at 1035.764 kb on + strand, within EX28DRAFT_1028 at 1035.764 kb on + strand, within EX28DRAFT_1028 at 1035.765 kb on - strand, within EX28DRAFT_1028 at 1035.787 kb on + strand, within EX28DRAFT_1028 at 1035.787 kb on + strand, within EX28DRAFT_1028 at 1035.788 kb on - strand, within EX28DRAFT_1028 at 1035.803 kb on - strand, within EX28DRAFT_1028 at 1035.892 kb on - strand, within EX28DRAFT_1028 at 1035.959 kb on - strand, within EX28DRAFT_1028 at 1036.072 kb on + strand, within EX28DRAFT_1028 at 1036.228 kb on - strand, within EX28DRAFT_1028 at 1036.279 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,033,462 + EX28DRAFT_1026 0.23 +0.3 1,033,504 - EX28DRAFT_1026 0.26 +0.0 1,033,504 - EX28DRAFT_1026 0.26 +0.3 1,033,528 - EX28DRAFT_1026 0.29 +0.2 1,033,543 - EX28DRAFT_1026 0.30 -0.1 1,033,651 + EX28DRAFT_1026 0.39 -0.7 1,033,651 + EX28DRAFT_1026 0.39 +0.3 1,033,651 + EX28DRAFT_1026 0.39 +0.1 1,033,651 + EX28DRAFT_1026 0.39 +0.5 1,033,652 - EX28DRAFT_1026 0.39 +0.3 1,033,753 + EX28DRAFT_1026 0.48 +0.5 1,033,768 + EX28DRAFT_1026 0.49 -0.3 1,033,768 + EX28DRAFT_1026 0.49 -0.2 1,033,768 + EX28DRAFT_1026 0.49 +0.2 1,033,769 - EX28DRAFT_1026 0.50 -0.1 1,033,819 - EX28DRAFT_1026 0.54 -0.4 1,033,822 - EX28DRAFT_1026 0.54 -0.2 1,034,098 + EX28DRAFT_1026 0.78 +0.0 1,034,098 + EX28DRAFT_1026 0.78 +0.8 1,034,099 - EX28DRAFT_1026 0.78 +0.9 1,034,188 - EX28DRAFT_1026 0.86 -0.1 1,034,188 - EX28DRAFT_1026 0.86 -0.2 1,034,300 - -0.7 1,034,320 + -0.1 1,034,321 - +0.2 1,034,371 - -0.2 1,034,403 + +1.1 1,034,634 - EX28DRAFT_1027 0.27 -0.2 1,034,634 - EX28DRAFT_1027 0.27 -0.1 1,035,030 + EX28DRAFT_1027 0.66 +0.2 1,035,109 + EX28DRAFT_1027 0.73 -0.2 1,035,130 - EX28DRAFT_1027 0.76 -0.2 1,035,150 - EX28DRAFT_1027 0.78 +0.2 1,035,150 - EX28DRAFT_1027 0.78 +0.1 1,035,158 + EX28DRAFT_1027 0.78 -0.4 1,035,159 - EX28DRAFT_1027 0.78 -0.1 1,035,208 - EX28DRAFT_1027 0.83 -0.7 1,035,423 - -0.1 1,035,511 + EX28DRAFT_1028 0.14 -0.2 1,035,515 + EX28DRAFT_1028 0.14 +0.1 1,035,516 - EX28DRAFT_1028 0.14 -0.1 1,035,631 + EX28DRAFT_1028 0.27 -0.1 1,035,764 + EX28DRAFT_1028 0.41 +0.2 1,035,764 + EX28DRAFT_1028 0.41 -0.3 1,035,765 - EX28DRAFT_1028 0.41 -1.0 1,035,787 + EX28DRAFT_1028 0.43 -0.6 1,035,787 + EX28DRAFT_1028 0.43 +0.4 1,035,788 - EX28DRAFT_1028 0.43 -0.1 1,035,803 - EX28DRAFT_1028 0.45 +0.3 1,035,892 - EX28DRAFT_1028 0.54 -0.6 1,035,959 - EX28DRAFT_1028 0.61 -0.3 1,036,072 + EX28DRAFT_1028 0.73 +1.1 1,036,228 - EX28DRAFT_1028 0.90 -0.4 1,036,279 + +0.0
Or see this region's nucleotide sequence