Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1027

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1026 and EX28DRAFT_1027 are separated by 17 nucleotidesEX28DRAFT_1027 and EX28DRAFT_1028 are separated by 1 nucleotidesEX28DRAFT_1028 and EX28DRAFT_1029 overlap by 11 nucleotides EX28DRAFT_1026: EX28DRAFT_1026 - Spermidine/putrescine-binding periplasmic protein, at 1,033,201 to 1,034,346 _1026 EX28DRAFT_1027: EX28DRAFT_1027 - ABC-type spermidine/putrescine transport systems, ATPase components, at 1,034,364 to 1,035,377 _1027 EX28DRAFT_1028: EX28DRAFT_1028 - ABC-type spermidine/putrescine transport system, permease component I, at 1,035,379 to 1,036,323 _1028 EX28DRAFT_1029: EX28DRAFT_1029 - ABC-type spermidine/putrescine transport system, permease component II, at 1,036,313 to 1,037,119 _1029 Position (kb) 1034 1035 1036Strain fitness (log2 ratio) -1 0 1at 1033.462 kb on + strand, within EX28DRAFT_1026at 1033.504 kb on - strand, within EX28DRAFT_1026at 1033.504 kb on - strand, within EX28DRAFT_1026at 1033.528 kb on - strand, within EX28DRAFT_1026at 1033.543 kb on - strand, within EX28DRAFT_1026at 1033.651 kb on + strand, within EX28DRAFT_1026at 1033.651 kb on + strand, within EX28DRAFT_1026at 1033.651 kb on + strand, within EX28DRAFT_1026at 1033.651 kb on + strand, within EX28DRAFT_1026at 1033.652 kb on - strand, within EX28DRAFT_1026at 1033.753 kb on + strand, within EX28DRAFT_1026at 1033.768 kb on + strand, within EX28DRAFT_1026at 1033.768 kb on + strand, within EX28DRAFT_1026at 1033.768 kb on + strand, within EX28DRAFT_1026at 1033.769 kb on - strand, within EX28DRAFT_1026at 1033.819 kb on - strand, within EX28DRAFT_1026at 1033.822 kb on - strand, within EX28DRAFT_1026at 1034.098 kb on + strand, within EX28DRAFT_1026at 1034.098 kb on + strand, within EX28DRAFT_1026at 1034.099 kb on - strand, within EX28DRAFT_1026at 1034.188 kb on - strand, within EX28DRAFT_1026at 1034.188 kb on - strand, within EX28DRAFT_1026at 1034.300 kb on - strandat 1034.320 kb on + strandat 1034.321 kb on - strandat 1034.371 kb on - strandat 1034.403 kb on + strandat 1034.634 kb on - strand, within EX28DRAFT_1027at 1034.634 kb on - strand, within EX28DRAFT_1027at 1035.030 kb on + strand, within EX28DRAFT_1027at 1035.109 kb on + strand, within EX28DRAFT_1027at 1035.130 kb on - strand, within EX28DRAFT_1027at 1035.150 kb on - strand, within EX28DRAFT_1027at 1035.150 kb on - strand, within EX28DRAFT_1027at 1035.158 kb on + strand, within EX28DRAFT_1027at 1035.159 kb on - strand, within EX28DRAFT_1027at 1035.208 kb on - strand, within EX28DRAFT_1027at 1035.423 kb on - strandat 1035.511 kb on + strand, within EX28DRAFT_1028at 1035.515 kb on + strand, within EX28DRAFT_1028at 1035.516 kb on - strand, within EX28DRAFT_1028at 1035.631 kb on + strand, within EX28DRAFT_1028at 1035.764 kb on + strand, within EX28DRAFT_1028at 1035.764 kb on + strand, within EX28DRAFT_1028at 1035.765 kb on - strand, within EX28DRAFT_1028at 1035.787 kb on + strand, within EX28DRAFT_1028at 1035.787 kb on + strand, within EX28DRAFT_1028at 1035.788 kb on - strand, within EX28DRAFT_1028at 1035.803 kb on - strand, within EX28DRAFT_1028at 1035.892 kb on - strand, within EX28DRAFT_1028at 1035.959 kb on - strand, within EX28DRAFT_1028at 1036.072 kb on + strand, within EX28DRAFT_1028at 1036.228 kb on - strand, within EX28DRAFT_1028at 1036.279 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,033,462 + EX28DRAFT_1026 0.23 +0.3
1,033,504 - EX28DRAFT_1026 0.26 +0.0
1,033,504 - EX28DRAFT_1026 0.26 +0.3
1,033,528 - EX28DRAFT_1026 0.29 +0.2
1,033,543 - EX28DRAFT_1026 0.30 -0.1
1,033,651 + EX28DRAFT_1026 0.39 -0.7
1,033,651 + EX28DRAFT_1026 0.39 +0.3
1,033,651 + EX28DRAFT_1026 0.39 +0.1
1,033,651 + EX28DRAFT_1026 0.39 +0.5
1,033,652 - EX28DRAFT_1026 0.39 +0.3
1,033,753 + EX28DRAFT_1026 0.48 +0.5
1,033,768 + EX28DRAFT_1026 0.49 -0.3
1,033,768 + EX28DRAFT_1026 0.49 -0.2
1,033,768 + EX28DRAFT_1026 0.49 +0.2
1,033,769 - EX28DRAFT_1026 0.50 -0.1
1,033,819 - EX28DRAFT_1026 0.54 -0.4
1,033,822 - EX28DRAFT_1026 0.54 -0.2
1,034,098 + EX28DRAFT_1026 0.78 +0.0
1,034,098 + EX28DRAFT_1026 0.78 +0.8
1,034,099 - EX28DRAFT_1026 0.78 +0.9
1,034,188 - EX28DRAFT_1026 0.86 -0.1
1,034,188 - EX28DRAFT_1026 0.86 -0.2
1,034,300 - -0.7
1,034,320 + -0.1
1,034,321 - +0.2
1,034,371 - -0.2
1,034,403 + +1.1
1,034,634 - EX28DRAFT_1027 0.27 -0.2
1,034,634 - EX28DRAFT_1027 0.27 -0.1
1,035,030 + EX28DRAFT_1027 0.66 +0.2
1,035,109 + EX28DRAFT_1027 0.73 -0.2
1,035,130 - EX28DRAFT_1027 0.76 -0.2
1,035,150 - EX28DRAFT_1027 0.78 +0.2
1,035,150 - EX28DRAFT_1027 0.78 +0.1
1,035,158 + EX28DRAFT_1027 0.78 -0.4
1,035,159 - EX28DRAFT_1027 0.78 -0.1
1,035,208 - EX28DRAFT_1027 0.83 -0.7
1,035,423 - -0.1
1,035,511 + EX28DRAFT_1028 0.14 -0.2
1,035,515 + EX28DRAFT_1028 0.14 +0.1
1,035,516 - EX28DRAFT_1028 0.14 -0.1
1,035,631 + EX28DRAFT_1028 0.27 -0.1
1,035,764 + EX28DRAFT_1028 0.41 +0.2
1,035,764 + EX28DRAFT_1028 0.41 -0.3
1,035,765 - EX28DRAFT_1028 0.41 -1.0
1,035,787 + EX28DRAFT_1028 0.43 -0.6
1,035,787 + EX28DRAFT_1028 0.43 +0.4
1,035,788 - EX28DRAFT_1028 0.43 -0.1
1,035,803 - EX28DRAFT_1028 0.45 +0.3
1,035,892 - EX28DRAFT_1028 0.54 -0.6
1,035,959 - EX28DRAFT_1028 0.61 -0.3
1,036,072 + EX28DRAFT_1028 0.73 +1.1
1,036,228 - EX28DRAFT_1028 0.90 -0.4
1,036,279 + +0.0

Or see this region's nucleotide sequence