Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1018 and EX28DRAFT_1019 are separated by 271 nucleotides EX28DRAFT_1019 and EX28DRAFT_1020 are separated by 0 nucleotides EX28DRAFT_1020 and EX28DRAFT_1021 are separated by 128 nucleotides EX28DRAFT_1021 and EX28DRAFT_1022 overlap by 1 nucleotides
EX28DRAFT_1018: EX28DRAFT_1018 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric, at 1,023,692 to 1,027,216
_1018
EX28DRAFT_1019: EX28DRAFT_1019 - Putative hemolysin, at 1,027,488 to 1,027,754
_1019
EX28DRAFT_1020: EX28DRAFT_1020 - Heat shock protein, at 1,027,755 to 1,028,192
_1020
EX28DRAFT_1021: EX28DRAFT_1021 - Protein of unknown function (DUF2474), at 1,028,321 to 1,028,449
_1021
EX28DRAFT_1022: EX28DRAFT_1022 - cytochrome d oxidase, subunit II (cydB), at 1,028,449 to 1,029,459
_1022
Position (kb)
1027
1028 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1026.523 kb on - strand, within EX28DRAFT_1018 at 1026.556 kb on - strand, within EX28DRAFT_1018 at 1026.661 kb on + strand, within EX28DRAFT_1018 at 1026.661 kb on + strand, within EX28DRAFT_1018 at 1026.661 kb on + strand, within EX28DRAFT_1018 at 1026.662 kb on - strand, within EX28DRAFT_1018 at 1026.662 kb on - strand, within EX28DRAFT_1018 at 1026.768 kb on - strand, within EX28DRAFT_1018 at 1026.863 kb on - strand, within EX28DRAFT_1018 at 1026.936 kb on + strand at 1026.936 kb on + strand at 1027.127 kb on - strand at 1027.156 kb on + strand at 1027.208 kb on - strand at 1027.257 kb on - strand at 1027.278 kb on + strand at 1027.287 kb on + strand at 1027.287 kb on + strand at 1027.288 kb on - strand at 1027.289 kb on + strand at 1027.290 kb on - strand at 1027.356 kb on + strand at 1027.406 kb on + strand at 1027.406 kb on + strand at 1027.449 kb on - strand at 1027.449 kb on - strand at 1027.451 kb on + strand at 1027.451 kb on + strand at 1027.452 kb on - strand at 1027.457 kb on + strand at 1027.457 kb on + strand at 1027.458 kb on - strand at 1027.458 kb on - strand at 1027.458 kb on - strand at 1027.539 kb on - strand, within EX28DRAFT_1019 at 1027.712 kb on + strand, within EX28DRAFT_1019 at 1027.749 kb on + strand at 1027.757 kb on - strand at 1027.769 kb on + strand at 1027.804 kb on - strand, within EX28DRAFT_1020 at 1027.920 kb on - strand, within EX28DRAFT_1020 at 1027.925 kb on + strand, within EX28DRAFT_1020 at 1027.925 kb on + strand, within EX28DRAFT_1020 at 1027.926 kb on - strand, within EX28DRAFT_1020 at 1027.995 kb on - strand, within EX28DRAFT_1020 at 1027.995 kb on - strand, within EX28DRAFT_1020 at 1028.009 kb on + strand, within EX28DRAFT_1020 at 1028.102 kb on + strand, within EX28DRAFT_1020 at 1028.102 kb on + strand, within EX28DRAFT_1020 at 1028.138 kb on + strand, within EX28DRAFT_1020 at 1028.139 kb on - strand, within EX28DRAFT_1020 at 1028.208 kb on - strand at 1028.210 kb on - strand at 1028.210 kb on - strand at 1028.213 kb on + strand at 1028.266 kb on + strand at 1028.368 kb on + strand, within EX28DRAFT_1021 at 1028.369 kb on - strand, within EX28DRAFT_1021 at 1028.424 kb on - strand, within EX28DRAFT_1021 at 1028.492 kb on + strand at 1028.493 kb on - strand at 1028.493 kb on - strand at 1028.495 kb on + strand at 1028.496 kb on - strand at 1028.510 kb on + strand at 1028.510 kb on + strand at 1028.511 kb on - strand at 1028.553 kb on + strand, within EX28DRAFT_1022 at 1028.553 kb on + strand, within EX28DRAFT_1022 at 1028.611 kb on - strand, within EX28DRAFT_1022 at 1028.614 kb on - strand, within EX28DRAFT_1022 at 1028.614 kb on - strand, within EX28DRAFT_1022 at 1028.657 kb on - strand, within EX28DRAFT_1022 at 1028.723 kb on + strand, within EX28DRAFT_1022
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,026,523 - EX28DRAFT_1018 0.80 -2.2 1,026,556 - EX28DRAFT_1018 0.81 +0.1 1,026,661 + EX28DRAFT_1018 0.84 +1.6 1,026,661 + EX28DRAFT_1018 0.84 +0.1 1,026,661 + EX28DRAFT_1018 0.84 -1.1 1,026,662 - EX28DRAFT_1018 0.84 +2.2 1,026,662 - EX28DRAFT_1018 0.84 -0.6 1,026,768 - EX28DRAFT_1018 0.87 +0.5 1,026,863 - EX28DRAFT_1018 0.90 -0.7 1,026,936 + -0.6 1,026,936 + +0.7 1,027,127 - +0.1 1,027,156 + +0.0 1,027,208 - -0.0 1,027,257 - -0.6 1,027,278 + -0.4 1,027,287 + -0.5 1,027,287 + -0.2 1,027,288 - +0.4 1,027,289 + +0.5 1,027,290 - +0.7 1,027,356 + -0.1 1,027,406 + -0.5 1,027,406 + -0.2 1,027,449 - -0.1 1,027,449 - +0.2 1,027,451 + -0.0 1,027,451 + +0.3 1,027,452 - -0.4 1,027,457 + +0.5 1,027,457 + -0.0 1,027,458 - -1.2 1,027,458 - -0.0 1,027,458 - -0.4 1,027,539 - EX28DRAFT_1019 0.19 +0.3 1,027,712 + EX28DRAFT_1019 0.84 +3.2 1,027,749 + +1.5 1,027,757 - +0.4 1,027,769 + +0.2 1,027,804 - EX28DRAFT_1020 0.11 -0.7 1,027,920 - EX28DRAFT_1020 0.38 +0.5 1,027,925 + EX28DRAFT_1020 0.39 -0.3 1,027,925 + EX28DRAFT_1020 0.39 +0.7 1,027,926 - EX28DRAFT_1020 0.39 -0.4 1,027,995 - EX28DRAFT_1020 0.55 -0.6 1,027,995 - EX28DRAFT_1020 0.55 -0.9 1,028,009 + EX28DRAFT_1020 0.58 +0.4 1,028,102 + EX28DRAFT_1020 0.79 -1.5 1,028,102 + EX28DRAFT_1020 0.79 -0.1 1,028,138 + EX28DRAFT_1020 0.87 -0.2 1,028,139 - EX28DRAFT_1020 0.88 +0.1 1,028,208 - -0.1 1,028,210 - +0.5 1,028,210 - +0.1 1,028,213 + -0.2 1,028,266 + -0.1 1,028,368 + EX28DRAFT_1021 0.36 -0.3 1,028,369 - EX28DRAFT_1021 0.37 -0.6 1,028,424 - EX28DRAFT_1021 0.80 -0.0 1,028,492 + -0.1 1,028,493 - +0.1 1,028,493 - +0.2 1,028,495 + +0.6 1,028,496 - +0.4 1,028,510 + -0.4 1,028,510 + +0.0 1,028,511 - +0.4 1,028,553 + EX28DRAFT_1022 0.10 +0.1 1,028,553 + EX28DRAFT_1022 0.10 -0.2 1,028,611 - EX28DRAFT_1022 0.16 -0.0 1,028,614 - EX28DRAFT_1022 0.16 -0.3 1,028,614 - EX28DRAFT_1022 0.16 -0.1 1,028,657 - EX28DRAFT_1022 0.21 +0.5 1,028,723 + EX28DRAFT_1022 0.27 -0.1
Or see this region's nucleotide sequence