Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0965 and EX28DRAFT_0966 are separated by 123 nucleotides EX28DRAFT_0966 and EX28DRAFT_0967 are separated by 202 nucleotides EX28DRAFT_0967 and EX28DRAFT_0968 overlap by 4 nucleotides
EX28DRAFT_0965: EX28DRAFT_0965 - ABC transporter transmembrane region, at 967,554 to 968,465
_0965
EX28DRAFT_0966: EX28DRAFT_0966 - hypothetical protein, at 968,589 to 969,044
_0966
EX28DRAFT_0967: EX28DRAFT_0967 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 969,247 to 969,951
_0967
EX28DRAFT_0968: EX28DRAFT_0968 - Signal transduction histidine kinase, at 969,948 to 971,012
_0968
Position (kb) 969
970 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 968.257 kb on + strand, within EX28DRAFT_0965 at 968.258 kb on - strand, within EX28DRAFT_0965 at 968.258 kb on - strand, within EX28DRAFT_0965 at 968.603 kb on + strand at 968.691 kb on + strand, within EX28DRAFT_0966 at 968.708 kb on + strand, within EX28DRAFT_0966 at 968.711 kb on + strand, within EX28DRAFT_0966 at 968.791 kb on - strand, within EX28DRAFT_0966 at 968.824 kb on + strand, within EX28DRAFT_0966 at 968.825 kb on - strand, within EX28DRAFT_0966 at 968.825 kb on - strand, within EX28DRAFT_0966 at 968.895 kb on - strand, within EX28DRAFT_0966 at 968.932 kb on + strand, within EX28DRAFT_0966 at 968.935 kb on - strand, within EX28DRAFT_0966 at 969.135 kb on + strand at 969.205 kb on - strand at 969.302 kb on + strand at 969.303 kb on - strand at 969.314 kb on - strand at 969.317 kb on + strand at 969.387 kb on + strand, within EX28DRAFT_0967 at 969.402 kb on - strand, within EX28DRAFT_0967 at 969.443 kb on + strand, within EX28DRAFT_0967 at 969.443 kb on + strand, within EX28DRAFT_0967 at 969.444 kb on - strand, within EX28DRAFT_0967 at 969.447 kb on + strand, within EX28DRAFT_0967 at 969.484 kb on - strand, within EX28DRAFT_0967 at 969.548 kb on - strand, within EX28DRAFT_0967 at 969.660 kb on + strand, within EX28DRAFT_0967 at 969.686 kb on - strand, within EX28DRAFT_0967 at 969.749 kb on + strand, within EX28DRAFT_0967 at 969.750 kb on - strand, within EX28DRAFT_0967 at 969.754 kb on - strand, within EX28DRAFT_0967 at 969.829 kb on - strand, within EX28DRAFT_0967 at 969.829 kb on - strand, within EX28DRAFT_0967 at 969.855 kb on + strand, within EX28DRAFT_0967 at 969.987 kb on + strand at 969.987 kb on + strand at 969.988 kb on - strand at 969.988 kb on - strand at 969.988 kb on - strand at 969.988 kb on - strand at 969.988 kb on - strand at 969.988 kb on - strand at 969.988 kb on - strand at 969.989 kb on + strand at 969.990 kb on - strand at 969.990 kb on - strand at 969.990 kb on - strand at 970.007 kb on + strand at 970.028 kb on - strand at 970.028 kb on - strand at 970.152 kb on - strand, within EX28DRAFT_0968 at 970.157 kb on + strand, within EX28DRAFT_0968 at 970.184 kb on - strand, within EX28DRAFT_0968 at 970.411 kb on + strand, within EX28DRAFT_0968 at 970.411 kb on + strand, within EX28DRAFT_0968 at 970.412 kb on - strand, within EX28DRAFT_0968 at 970.412 kb on - strand, within EX28DRAFT_0968 at 970.472 kb on + strand, within EX28DRAFT_0968 at 970.473 kb on - strand, within EX28DRAFT_0968 at 970.551 kb on + strand, within EX28DRAFT_0968 at 970.729 kb on + strand, within EX28DRAFT_0968 at 970.734 kb on + strand, within EX28DRAFT_0968 at 970.735 kb on - strand, within EX28DRAFT_0968 at 970.735 kb on - strand, within EX28DRAFT_0968 at 970.788 kb on + strand, within EX28DRAFT_0968 at 970.789 kb on - strand, within EX28DRAFT_0968 at 970.789 kb on - strand, within EX28DRAFT_0968 at 970.789 kb on - strand, within EX28DRAFT_0968 at 970.791 kb on - strand, within EX28DRAFT_0968 at 970.796 kb on + strand, within EX28DRAFT_0968
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 968,257 + EX28DRAFT_0965 0.77 -0.2 968,258 - EX28DRAFT_0965 0.77 +0.2 968,258 - EX28DRAFT_0965 0.77 -0.0 968,603 + -2.2 968,691 + EX28DRAFT_0966 0.22 +0.1 968,708 + EX28DRAFT_0966 0.26 -0.2 968,711 + EX28DRAFT_0966 0.27 -0.2 968,791 - EX28DRAFT_0966 0.44 -0.3 968,824 + EX28DRAFT_0966 0.52 -0.3 968,825 - EX28DRAFT_0966 0.52 +2.1 968,825 - EX28DRAFT_0966 0.52 -0.5 968,895 - EX28DRAFT_0966 0.67 -0.1 968,932 + EX28DRAFT_0966 0.75 +0.1 968,935 - EX28DRAFT_0966 0.76 -0.8 969,135 + +0.4 969,205 - -0.9 969,302 + -0.2 969,303 - +0.1 969,314 - -0.0 969,317 + -1.2 969,387 + EX28DRAFT_0967 0.20 +0.0 969,402 - EX28DRAFT_0967 0.22 +1.6 969,443 + EX28DRAFT_0967 0.28 -0.1 969,443 + EX28DRAFT_0967 0.28 +0.3 969,444 - EX28DRAFT_0967 0.28 -0.1 969,447 + EX28DRAFT_0967 0.28 -0.5 969,484 - EX28DRAFT_0967 0.34 +0.3 969,548 - EX28DRAFT_0967 0.43 +0.2 969,660 + EX28DRAFT_0967 0.59 -0.2 969,686 - EX28DRAFT_0967 0.62 +3.2 969,749 + EX28DRAFT_0967 0.71 +0.9 969,750 - EX28DRAFT_0967 0.71 +0.4 969,754 - EX28DRAFT_0967 0.72 -0.0 969,829 - EX28DRAFT_0967 0.83 +0.2 969,829 - EX28DRAFT_0967 0.83 -0.0 969,855 + EX28DRAFT_0967 0.86 -0.3 969,987 + -0.3 969,987 + +0.1 969,988 - +0.7 969,988 - -0.1 969,988 - -0.1 969,988 - -0.7 969,988 - -0.2 969,988 - -0.7 969,988 - +0.5 969,989 + -0.1 969,990 - -0.2 969,990 - +0.5 969,990 - +0.4 970,007 + +0.4 970,028 - +0.6 970,028 - +0.1 970,152 - EX28DRAFT_0968 0.19 +0.1 970,157 + EX28DRAFT_0968 0.20 -0.0 970,184 - EX28DRAFT_0968 0.22 -0.2 970,411 + EX28DRAFT_0968 0.43 +0.8 970,411 + EX28DRAFT_0968 0.43 -0.2 970,412 - EX28DRAFT_0968 0.44 -1.0 970,412 - EX28DRAFT_0968 0.44 -0.2 970,472 + EX28DRAFT_0968 0.49 +0.2 970,473 - EX28DRAFT_0968 0.49 -0.2 970,551 + EX28DRAFT_0968 0.57 -0.3 970,729 + EX28DRAFT_0968 0.73 +0.3 970,734 + EX28DRAFT_0968 0.74 -0.4 970,735 - EX28DRAFT_0968 0.74 +0.1 970,735 - EX28DRAFT_0968 0.74 -0.9 970,788 + EX28DRAFT_0968 0.79 +0.4 970,789 - EX28DRAFT_0968 0.79 +0.7 970,789 - EX28DRAFT_0968 0.79 -0.4 970,789 - EX28DRAFT_0968 0.79 +0.2 970,791 - EX28DRAFT_0968 0.79 -0.2 970,796 + EX28DRAFT_0968 0.80 -0.2
Or see this region's nucleotide sequence