Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0889 and EX28DRAFT_0890 overlap by 4 nucleotides EX28DRAFT_0890 and EX28DRAFT_0891 are separated by 97 nucleotides EX28DRAFT_0891 and EX28DRAFT_0892 are separated by 1 nucleotides
EX28DRAFT_0889: EX28DRAFT_0889 - hypothetical protein, at 897,097 to 898,164
_0889
EX28DRAFT_0890: EX28DRAFT_0890 - hypothetical protein, at 898,161 to 898,856
_0890
EX28DRAFT_0891: EX28DRAFT_0891 - phage portal protein, PBSX family, at 898,954 to 899,979
_0891
EX28DRAFT_0892: EX28DRAFT_0892 - Uncharacterized conserved protein, at 899,981 to 901,750
_0892
Position (kb) 898
899
900 Strain fitness (log2 ratio) -1
0
1
2 at 898.035 kb on - strand, within EX28DRAFT_0889 at 898.053 kb on - strand, within EX28DRAFT_0889 at 898.306 kb on + strand, within EX28DRAFT_0890 at 898.710 kb on + strand, within EX28DRAFT_0890 at 898.924 kb on - strand at 898.966 kb on + strand at 898.967 kb on - strand at 898.967 kb on - strand at 898.967 kb on - strand at 899.354 kb on + strand, within EX28DRAFT_0891 at 899.354 kb on + strand, within EX28DRAFT_0891 at 899.354 kb on + strand, within EX28DRAFT_0891 at 899.355 kb on - strand, within EX28DRAFT_0891 at 899.388 kb on - strand, within EX28DRAFT_0891 at 899.390 kb on + strand, within EX28DRAFT_0891 at 899.390 kb on + strand, within EX28DRAFT_0891 at 899.391 kb on - strand, within EX28DRAFT_0891 at 899.391 kb on - strand, within EX28DRAFT_0891 at 899.391 kb on - strand, within EX28DRAFT_0891 at 899.436 kb on + strand, within EX28DRAFT_0891 at 899.549 kb on + strand, within EX28DRAFT_0891 at 899.585 kb on + strand, within EX28DRAFT_0891 at 899.586 kb on - strand, within EX28DRAFT_0891 at 899.669 kb on + strand, within EX28DRAFT_0891 at 899.826 kb on - strand, within EX28DRAFT_0891 at 899.982 kb on + strand at 899.982 kb on + strand at 899.983 kb on - strand at 899.986 kb on + strand at 899.987 kb on - strand at 899.987 kb on - strand at 900.109 kb on - strand at 900.154 kb on + strand at 900.154 kb on + strand at 900.154 kb on + strand at 900.155 kb on - strand at 900.341 kb on - strand, within EX28DRAFT_0892 at 900.342 kb on + strand, within EX28DRAFT_0892 at 900.354 kb on + strand, within EX28DRAFT_0892 at 900.354 kb on + strand, within EX28DRAFT_0892 at 900.355 kb on - strand, within EX28DRAFT_0892 at 900.508 kb on - strand, within EX28DRAFT_0892 at 900.629 kb on - strand, within EX28DRAFT_0892 at 900.649 kb on + strand, within EX28DRAFT_0892 at 900.649 kb on + strand, within EX28DRAFT_0892 at 900.650 kb on - strand, within EX28DRAFT_0892 at 900.910 kb on - strand, within EX28DRAFT_0892
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 898,035 - EX28DRAFT_0889 0.88 -0.2 898,053 - EX28DRAFT_0889 0.90 +0.0 898,306 + EX28DRAFT_0890 0.21 -0.3 898,710 + EX28DRAFT_0890 0.79 +0.4 898,924 - -0.1 898,966 + +0.1 898,967 - +0.8 898,967 - -0.6 898,967 - -0.0 899,354 + EX28DRAFT_0891 0.39 +1.2 899,354 + EX28DRAFT_0891 0.39 +0.4 899,354 + EX28DRAFT_0891 0.39 -0.1 899,355 - EX28DRAFT_0891 0.39 +0.1 899,388 - EX28DRAFT_0891 0.42 -0.5 899,390 + EX28DRAFT_0891 0.42 +0.4 899,390 + EX28DRAFT_0891 0.42 -0.1 899,391 - EX28DRAFT_0891 0.43 +0.1 899,391 - EX28DRAFT_0891 0.43 +0.1 899,391 - EX28DRAFT_0891 0.43 +0.4 899,436 + EX28DRAFT_0891 0.47 +0.6 899,549 + EX28DRAFT_0891 0.58 -0.3 899,585 + EX28DRAFT_0891 0.62 +0.2 899,586 - EX28DRAFT_0891 0.62 -0.3 899,669 + EX28DRAFT_0891 0.70 +1.1 899,826 - EX28DRAFT_0891 0.85 +0.8 899,982 + -0.4 899,982 + +0.1 899,983 - -1.3 899,986 + -0.2 899,987 - +0.3 899,987 - +0.6 900,109 - -1.0 900,154 + +1.8 900,154 + -0.3 900,154 + +0.2 900,155 - -0.2 900,341 - EX28DRAFT_0892 0.20 +0.2 900,342 + EX28DRAFT_0892 0.20 -0.5 900,354 + EX28DRAFT_0892 0.21 +0.8 900,354 + EX28DRAFT_0892 0.21 +0.3 900,355 - EX28DRAFT_0892 0.21 +0.2 900,508 - EX28DRAFT_0892 0.30 +0.1 900,629 - EX28DRAFT_0892 0.37 -1.0 900,649 + EX28DRAFT_0892 0.38 -0.3 900,649 + EX28DRAFT_0892 0.38 -0.3 900,650 - EX28DRAFT_0892 0.38 +0.4 900,910 - EX28DRAFT_0892 0.52 +0.4
Or see this region's nucleotide sequence