Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0722

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0721 and EX28DRAFT_0722 are separated by 77 nucleotidesEX28DRAFT_0722 and EX28DRAFT_0723 overlap by 32 nucleotides EX28DRAFT_0721: EX28DRAFT_0721 - NOL1/NOP2/sun family putative RNA methylase, at 717,335 to 718,777 _0721 EX28DRAFT_0722: EX28DRAFT_0722 - Paraquat-inducible protein B, at 718,855 to 721,488 _0722 EX28DRAFT_0723: EX28DRAFT_0723 - integral membrane protein, PqiA family, at 721,457 to 722,740 _0723 Position (kb) 718 719 720 721 722Strain fitness (log2 ratio) -2 -1 0 1 2at 718.274 kb on - strand, within EX28DRAFT_0721at 718.483 kb on + strand, within EX28DRAFT_0721at 718.486 kb on - strand, within EX28DRAFT_0721at 718.585 kb on + strand, within EX28DRAFT_0721at 718.586 kb on - strand, within EX28DRAFT_0721at 718.700 kb on + strandat 718.814 kb on - strandat 718.819 kb on - strandat 718.857 kb on - strandat 719.077 kb on - strandat 719.077 kb on - strandat 719.336 kb on + strand, within EX28DRAFT_0722at 719.435 kb on + strand, within EX28DRAFT_0722at 719.436 kb on - strand, within EX28DRAFT_0722at 719.436 kb on - strand, within EX28DRAFT_0722at 719.539 kb on - strand, within EX28DRAFT_0722at 719.577 kb on + strand, within EX28DRAFT_0722at 719.578 kb on - strand, within EX28DRAFT_0722at 719.625 kb on + strand, within EX28DRAFT_0722at 719.625 kb on + strand, within EX28DRAFT_0722at 719.908 kb on + strand, within EX28DRAFT_0722at 719.909 kb on - strand, within EX28DRAFT_0722at 719.909 kb on - strand, within EX28DRAFT_0722at 719.996 kb on + strand, within EX28DRAFT_0722at 719.997 kb on - strand, within EX28DRAFT_0722at 720.167 kb on + strand, within EX28DRAFT_0722at 720.217 kb on - strand, within EX28DRAFT_0722at 720.251 kb on - strand, within EX28DRAFT_0722at 720.584 kb on + strand, within EX28DRAFT_0722at 720.584 kb on + strand, within EX28DRAFT_0722at 720.585 kb on - strand, within EX28DRAFT_0722at 720.677 kb on + strand, within EX28DRAFT_0722at 720.678 kb on - strand, within EX28DRAFT_0722at 721.007 kb on - strand, within EX28DRAFT_0722at 721.007 kb on - strand, within EX28DRAFT_0722at 721.041 kb on + strand, within EX28DRAFT_0722at 721.097 kb on + strand, within EX28DRAFT_0722at 721.097 kb on + strand, within EX28DRAFT_0722at 721.097 kb on + strand, within EX28DRAFT_0722at 721.098 kb on - strand, within EX28DRAFT_0722at 721.098 kb on - strand, within EX28DRAFT_0722at 721.098 kb on - strand, within EX28DRAFT_0722at 721.098 kb on - strand, within EX28DRAFT_0722at 721.206 kb on + strand, within EX28DRAFT_0722at 721.364 kb on + strandat 721.364 kb on + strandat 721.364 kb on + strandat 721.365 kb on - strandat 721.502 kb on + strandat 721.542 kb on - strandat 721.582 kb on + strandat 721.582 kb on + strandat 721.786 kb on + strand, within EX28DRAFT_0723at 721.831 kb on + strand, within EX28DRAFT_0723at 721.846 kb on + strand, within EX28DRAFT_0723at 721.849 kb on + strand, within EX28DRAFT_0723at 721.897 kb on + strand, within EX28DRAFT_0723at 721.897 kb on + strand, within EX28DRAFT_0723at 721.898 kb on - strand, within EX28DRAFT_0723at 722.028 kb on + strand, within EX28DRAFT_0723at 722.088 kb on + strand, within EX28DRAFT_0723at 722.238 kb on + strand, within EX28DRAFT_0723at 722.239 kb on - strand, within EX28DRAFT_0723at 722.239 kb on - strand, within EX28DRAFT_0723at 722.243 kb on - strand, within EX28DRAFT_0723at 722.243 kb on - strand, within EX28DRAFT_0723at 722.243 kb on - strand, within EX28DRAFT_0723at 722.311 kb on + strand, within EX28DRAFT_0723at 722.325 kb on - strand, within EX28DRAFT_0723at 722.325 kb on - strand, within EX28DRAFT_0723at 722.325 kb on - strand, within EX28DRAFT_0723at 722.328 kb on + strand, within EX28DRAFT_0723at 722.449 kb on + strand, within EX28DRAFT_0723at 722.449 kb on + strand, within EX28DRAFT_0723at 722.450 kb on - strand, within EX28DRAFT_0723at 722.450 kb on - strand, within EX28DRAFT_0723at 722.450 kb on - strand, within EX28DRAFT_0723at 722.453 kb on + strand, within EX28DRAFT_0723at 722.466 kb on + strand, within EX28DRAFT_0723at 722.467 kb on - strand, within EX28DRAFT_0723at 722.473 kb on + strand, within EX28DRAFT_0723at 722.473 kb on + strand, within EX28DRAFT_0723at 722.474 kb on - strand, within EX28DRAFT_0723

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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718,274 - EX28DRAFT_0721 0.65 -0.3
718,483 + EX28DRAFT_0721 0.80 -0.2
718,486 - EX28DRAFT_0721 0.80 +0.5
718,585 + EX28DRAFT_0721 0.87 -0.7
718,586 - EX28DRAFT_0721 0.87 +0.2
718,700 + -0.0
718,814 - -0.8
718,819 - -0.2
718,857 - -0.8
719,077 - -0.1
719,077 - -0.5
719,336 + EX28DRAFT_0722 0.18 -0.5
719,435 + EX28DRAFT_0722 0.22 +0.1
719,436 - EX28DRAFT_0722 0.22 -0.2
719,436 - EX28DRAFT_0722 0.22 +0.1
719,539 - EX28DRAFT_0722 0.26 -2.0
719,577 + EX28DRAFT_0722 0.27 +0.1
719,578 - EX28DRAFT_0722 0.27 +0.1
719,625 + EX28DRAFT_0722 0.29 -0.3
719,625 + EX28DRAFT_0722 0.29 +0.0
719,908 + EX28DRAFT_0722 0.40 +0.1
719,909 - EX28DRAFT_0722 0.40 +0.7
719,909 - EX28DRAFT_0722 0.40 +0.4
719,996 + EX28DRAFT_0722 0.43 +0.6
719,997 - EX28DRAFT_0722 0.43 +0.6
720,167 + EX28DRAFT_0722 0.50 +0.6
720,217 - EX28DRAFT_0722 0.52 -0.3
720,251 - EX28DRAFT_0722 0.53 +0.8
720,584 + EX28DRAFT_0722 0.66 +0.2
720,584 + EX28DRAFT_0722 0.66 +0.2
720,585 - EX28DRAFT_0722 0.66 +0.3
720,677 + EX28DRAFT_0722 0.69 -0.5
720,678 - EX28DRAFT_0722 0.69 +1.1
721,007 - EX28DRAFT_0722 0.82 -0.2
721,007 - EX28DRAFT_0722 0.82 -0.5
721,041 + EX28DRAFT_0722 0.83 -0.2
721,097 + EX28DRAFT_0722 0.85 -0.0
721,097 + EX28DRAFT_0722 0.85 +0.3
721,097 + EX28DRAFT_0722 0.85 -0.2
721,098 - EX28DRAFT_0722 0.85 +0.3
721,098 - EX28DRAFT_0722 0.85 +0.1
721,098 - EX28DRAFT_0722 0.85 +1.2
721,098 - EX28DRAFT_0722 0.85 +0.3
721,206 + EX28DRAFT_0722 0.89 +0.0
721,364 + -0.4
721,364 + +0.2
721,364 + -0.4
721,365 - +0.2
721,502 + -0.2
721,542 - +0.1
721,582 + +0.4
721,582 + -0.8
721,786 + EX28DRAFT_0723 0.26 +0.1
721,831 + EX28DRAFT_0723 0.29 -0.4
721,846 + EX28DRAFT_0723 0.30 -0.1
721,849 + EX28DRAFT_0723 0.31 -0.4
721,897 + EX28DRAFT_0723 0.34 -0.2
721,897 + EX28DRAFT_0723 0.34 +0.1
721,898 - EX28DRAFT_0723 0.34 +0.4
722,028 + EX28DRAFT_0723 0.44 -0.1
722,088 + EX28DRAFT_0723 0.49 -1.2
722,238 + EX28DRAFT_0723 0.61 -0.6
722,239 - EX28DRAFT_0723 0.61 -0.2
722,239 - EX28DRAFT_0723 0.61 -0.6
722,243 - EX28DRAFT_0723 0.61 -0.7
722,243 - EX28DRAFT_0723 0.61 -0.3
722,243 - EX28DRAFT_0723 0.61 +1.8
722,311 + EX28DRAFT_0723 0.67 -0.0
722,325 - EX28DRAFT_0723 0.68 -0.4
722,325 - EX28DRAFT_0723 0.68 -1.0
722,325 - EX28DRAFT_0723 0.68 +0.5
722,328 + EX28DRAFT_0723 0.68 +0.2
722,449 + EX28DRAFT_0723 0.77 -0.3
722,449 + EX28DRAFT_0723 0.77 -0.7
722,450 - EX28DRAFT_0723 0.77 -0.2
722,450 - EX28DRAFT_0723 0.77 +0.1
722,450 - EX28DRAFT_0723 0.77 +0.0
722,453 + EX28DRAFT_0723 0.78 +0.8
722,466 + EX28DRAFT_0723 0.79 -0.6
722,467 - EX28DRAFT_0723 0.79 +0.4
722,473 + EX28DRAFT_0723 0.79 -0.2
722,473 + EX28DRAFT_0723 0.79 +0.9
722,474 - EX28DRAFT_0723 0.79 -0.5

Or see this region's nucleotide sequence