Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0589

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0587 and EX28DRAFT_0588 overlap by 20 nucleotidesEX28DRAFT_0588 and EX28DRAFT_0589 overlap by 4 nucleotidesEX28DRAFT_0589 and EX28DRAFT_0590 are separated by 164 nucleotides EX28DRAFT_0587: EX28DRAFT_0587 - Membrane-associated lipoprotein involved in thiamine biosynthesis, at 589,715 to 590,677 _0587 EX28DRAFT_0588: EX28DRAFT_0588 - Response regulator of citrate/malate metabolism, at 590,658 to 591,377 _0588 EX28DRAFT_0589: EX28DRAFT_0589 - Signal transduction histidine kinase regulating citrate/malate metabolism, at 591,374 to 592,990 _0589 EX28DRAFT_0590: EX28DRAFT_0590 - Predicted sugar phosphate isomerase, at 593,155 to 594,018 _0590 Position (kb) 591 592 593Strain fitness (log2 ratio) -2 -1 0 1at 590.413 kb on + strand, within EX28DRAFT_0587at 590.413 kb on + strand, within EX28DRAFT_0587at 590.413 kb on + strand, within EX28DRAFT_0587at 590.516 kb on + strand, within EX28DRAFT_0587at 590.516 kb on + strand, within EX28DRAFT_0587at 590.516 kb on + strand, within EX28DRAFT_0587at 590.981 kb on - strand, within EX28DRAFT_0588at 590.983 kb on + strand, within EX28DRAFT_0588at 590.984 kb on - strand, within EX28DRAFT_0588at 590.984 kb on - strand, within EX28DRAFT_0588at 590.984 kb on - strand, within EX28DRAFT_0588at 590.984 kb on - strand, within EX28DRAFT_0588at 591.071 kb on - strand, within EX28DRAFT_0588at 591.203 kb on + strand, within EX28DRAFT_0588at 591.203 kb on + strand, within EX28DRAFT_0588at 591.205 kb on + strand, within EX28DRAFT_0588at 591.205 kb on + strand, within EX28DRAFT_0588at 591.205 kb on + strand, within EX28DRAFT_0588at 591.205 kb on + strand, within EX28DRAFT_0588at 591.205 kb on + strand, within EX28DRAFT_0588at 591.206 kb on - strand, within EX28DRAFT_0588at 591.246 kb on - strand, within EX28DRAFT_0588at 591.249 kb on - strand, within EX28DRAFT_0588at 591.249 kb on - strand, within EX28DRAFT_0588at 591.249 kb on - strand, within EX28DRAFT_0588at 591.296 kb on + strand, within EX28DRAFT_0588at 591.319 kb on + strandat 591.319 kb on + strandat 591.320 kb on - strandat 591.363 kb on + strandat 591.363 kb on + strandat 591.364 kb on - strandat 591.367 kb on - strandat 591.373 kb on - strandat 591.373 kb on - strandat 591.373 kb on - strandat 591.382 kb on + strandat 591.425 kb on - strandat 591.539 kb on - strand, within EX28DRAFT_0589at 591.545 kb on - strand, within EX28DRAFT_0589at 591.616 kb on - strand, within EX28DRAFT_0589at 591.817 kb on + strand, within EX28DRAFT_0589at 591.831 kb on - strand, within EX28DRAFT_0589at 591.865 kb on - strand, within EX28DRAFT_0589at 591.868 kb on + strand, within EX28DRAFT_0589at 591.868 kb on + strand, within EX28DRAFT_0589at 591.869 kb on - strand, within EX28DRAFT_0589at 591.869 kb on - strand, within EX28DRAFT_0589at 591.869 kb on - strand, within EX28DRAFT_0589at 591.869 kb on - strand, within EX28DRAFT_0589at 591.869 kb on - strand, within EX28DRAFT_0589at 591.888 kb on + strand, within EX28DRAFT_0589at 591.888 kb on + strand, within EX28DRAFT_0589at 591.889 kb on - strand, within EX28DRAFT_0589at 591.889 kb on - strand, within EX28DRAFT_0589at 591.889 kb on - strand, within EX28DRAFT_0589at 591.889 kb on - strand, within EX28DRAFT_0589at 591.947 kb on - strand, within EX28DRAFT_0589at 591.952 kb on + strand, within EX28DRAFT_0589at 591.953 kb on - strand, within EX28DRAFT_0589at 591.988 kb on - strand, within EX28DRAFT_0589at 591.992 kb on - strand, within EX28DRAFT_0589at 591.992 kb on - strand, within EX28DRAFT_0589at 592.093 kb on + strand, within EX28DRAFT_0589at 592.094 kb on - strand, within EX28DRAFT_0589at 592.157 kb on - strand, within EX28DRAFT_0589at 592.370 kb on - strand, within EX28DRAFT_0589at 592.415 kb on - strand, within EX28DRAFT_0589at 592.906 kb on + strandat 592.916 kb on + strandat 592.916 kb on + strandat 593.004 kb on + strandat 593.008 kb on + strandat 593.019 kb on + strandat 593.023 kb on + strandat 593.057 kb on - strandat 593.057 kb on - strandat 593.057 kb on - strandat 593.109 kb on + strandat 593.109 kb on + strandat 593.110 kb on - strandat 593.110 kb on - strandat 593.110 kb on - strandat 593.121 kb on + strandat 593.121 kb on + strandat 593.122 kb on - strandat 593.122 kb on - strandat 593.122 kb on - strandat 593.142 kb on - strandat 593.163 kb on + strandat 593.212 kb on - strandat 593.217 kb on + strandat 593.218 kb on - strandat 593.268 kb on + strand, within EX28DRAFT_0590at 593.269 kb on - strand, within EX28DRAFT_0590at 593.269 kb on - strand, within EX28DRAFT_0590at 593.280 kb on + strand, within EX28DRAFT_0590at 593.281 kb on - strand, within EX28DRAFT_0590at 593.281 kb on - strand, within EX28DRAFT_0590at 593.281 kb on - strand, within EX28DRAFT_0590at 593.295 kb on - strand, within EX28DRAFT_0590at 593.295 kb on - strand, within EX28DRAFT_0590at 593.298 kb on + strand, within EX28DRAFT_0590at 593.299 kb on - strand, within EX28DRAFT_0590at 593.301 kb on + strand, within EX28DRAFT_0590at 593.301 kb on + strand, within EX28DRAFT_0590at 593.301 kb on + strand, within EX28DRAFT_0590at 593.302 kb on - strand, within EX28DRAFT_0590at 593.302 kb on - strand, within EX28DRAFT_0590at 593.468 kb on - strand, within EX28DRAFT_0590at 593.518 kb on - strand, within EX28DRAFT_0590at 593.518 kb on - strand, within EX28DRAFT_0590at 593.692 kb on + strand, within EX28DRAFT_0590at 593.695 kb on - strand, within EX28DRAFT_0590at 593.776 kb on + strand, within EX28DRAFT_0590at 593.898 kb on + strand, within EX28DRAFT_0590at 593.904 kb on + strand, within EX28DRAFT_0590at 593.911 kb on - strand, within EX28DRAFT_0590at 593.911 kb on - strand, within EX28DRAFT_0590at 593.979 kb on + strandat 593.988 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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590,413 + EX28DRAFT_0587 0.72 -0.2
590,413 + EX28DRAFT_0587 0.72 -0.9
590,413 + EX28DRAFT_0587 0.72 -2.4
590,516 + EX28DRAFT_0587 0.83 +0.1
590,516 + EX28DRAFT_0587 0.83 +0.3
590,516 + EX28DRAFT_0587 0.83 -0.1
590,981 - EX28DRAFT_0588 0.45 -0.0
590,983 + EX28DRAFT_0588 0.45 -0.5
590,984 - EX28DRAFT_0588 0.45 +0.2
590,984 - EX28DRAFT_0588 0.45 -1.0
590,984 - EX28DRAFT_0588 0.45 +0.0
590,984 - EX28DRAFT_0588 0.45 +0.1
591,071 - EX28DRAFT_0588 0.57 +0.8
591,203 + EX28DRAFT_0588 0.76 +0.1
591,203 + EX28DRAFT_0588 0.76 +0.5
591,205 + EX28DRAFT_0588 0.76 -0.5
591,205 + EX28DRAFT_0588 0.76 +0.4
591,205 + EX28DRAFT_0588 0.76 +0.5
591,205 + EX28DRAFT_0588 0.76 +0.3
591,205 + EX28DRAFT_0588 0.76 +0.2
591,206 - EX28DRAFT_0588 0.76 +0.5
591,246 - EX28DRAFT_0588 0.82 -0.0
591,249 - EX28DRAFT_0588 0.82 +0.8
591,249 - EX28DRAFT_0588 0.82 -1.4
591,249 - EX28DRAFT_0588 0.82 -0.2
591,296 + EX28DRAFT_0588 0.89 +0.9
591,319 + +1.2
591,319 + +0.2
591,320 - +0.2
591,363 + -0.2
591,363 + -0.2
591,364 - -0.3
591,367 - -2.3
591,373 - -0.6
591,373 - -0.2
591,373 - +0.5
591,382 + -0.1
591,425 - +1.6
591,539 - EX28DRAFT_0589 0.10 +0.3
591,545 - EX28DRAFT_0589 0.11 -0.0
591,616 - EX28DRAFT_0589 0.15 +0.4
591,817 + EX28DRAFT_0589 0.27 +0.3
591,831 - EX28DRAFT_0589 0.28 -0.2
591,865 - EX28DRAFT_0589 0.30 +1.1
591,868 + EX28DRAFT_0589 0.31 -0.1
591,868 + EX28DRAFT_0589 0.31 -0.7
591,869 - EX28DRAFT_0589 0.31 +0.2
591,869 - EX28DRAFT_0589 0.31 +0.1
591,869 - EX28DRAFT_0589 0.31 -0.2
591,869 - EX28DRAFT_0589 0.31 -0.4
591,869 - EX28DRAFT_0589 0.31 +0.1
591,888 + EX28DRAFT_0589 0.32 +0.3
591,888 + EX28DRAFT_0589 0.32 -0.8
591,889 - EX28DRAFT_0589 0.32 +1.1
591,889 - EX28DRAFT_0589 0.32 +0.7
591,889 - EX28DRAFT_0589 0.32 -0.4
591,889 - EX28DRAFT_0589 0.32 -1.0
591,947 - EX28DRAFT_0589 0.35 -0.5
591,952 + EX28DRAFT_0589 0.36 +0.5
591,953 - EX28DRAFT_0589 0.36 +0.1
591,988 - EX28DRAFT_0589 0.38 -0.3
591,992 - EX28DRAFT_0589 0.38 +0.1
591,992 - EX28DRAFT_0589 0.38 +0.3
592,093 + EX28DRAFT_0589 0.44 -0.3
592,094 - EX28DRAFT_0589 0.45 +0.2
592,157 - EX28DRAFT_0589 0.48 +0.3
592,370 - EX28DRAFT_0589 0.62 -0.1
592,415 - EX28DRAFT_0589 0.64 +0.6
592,906 + -0.3
592,916 + +1.3
592,916 + +1.2
593,004 + -0.5
593,008 + +0.3
593,019 + +1.4
593,023 + -0.0
593,057 - -0.2
593,057 - +0.3
593,057 - -0.6
593,109 + -0.1
593,109 + -0.2
593,110 - -0.1
593,110 - -0.3
593,110 - -0.6
593,121 + +0.7
593,121 + -0.4
593,122 - -0.5
593,122 - +0.1
593,122 - -0.2
593,142 - +0.6
593,163 + +0.0
593,212 - -0.0
593,217 + -0.6
593,218 - +0.6
593,268 + EX28DRAFT_0590 0.13 +0.9
593,269 - EX28DRAFT_0590 0.13 +0.3
593,269 - EX28DRAFT_0590 0.13 -0.1
593,280 + EX28DRAFT_0590 0.14 +0.0
593,281 - EX28DRAFT_0590 0.15 -0.1
593,281 - EX28DRAFT_0590 0.15 +0.1
593,281 - EX28DRAFT_0590 0.15 +0.0
593,295 - EX28DRAFT_0590 0.16 -0.9
593,295 - EX28DRAFT_0590 0.16 +0.2
593,298 + EX28DRAFT_0590 0.17 +0.1
593,299 - EX28DRAFT_0590 0.17 +0.3
593,301 + EX28DRAFT_0590 0.17 +0.6
593,301 + EX28DRAFT_0590 0.17 -0.1
593,301 + EX28DRAFT_0590 0.17 -0.3
593,302 - EX28DRAFT_0590 0.17 +0.1
593,302 - EX28DRAFT_0590 0.17 +0.0
593,468 - EX28DRAFT_0590 0.36 -0.7
593,518 - EX28DRAFT_0590 0.42 -0.8
593,518 - EX28DRAFT_0590 0.42 +0.2
593,692 + EX28DRAFT_0590 0.62 -1.2
593,695 - EX28DRAFT_0590 0.62 -0.2
593,776 + EX28DRAFT_0590 0.72 -0.2
593,898 + EX28DRAFT_0590 0.86 -0.3
593,904 + EX28DRAFT_0590 0.87 -0.3
593,911 - EX28DRAFT_0590 0.88 +0.3
593,911 - EX28DRAFT_0590 0.88 +0.1
593,979 + +0.1
593,988 + +0.4

Or see this region's nucleotide sequence