Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0584

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0583 and EX28DRAFT_0584 are separated by 282 nucleotidesEX28DRAFT_0584 and EX28DRAFT_0585 are separated by 53 nucleotides EX28DRAFT_0583: EX28DRAFT_0583 - metabolite-proton symporter, at 581,428 to 582,741 _0583 EX28DRAFT_0584: EX28DRAFT_0584 - hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region, at 583,024 to 584,673 _0584 EX28DRAFT_0585: EX28DRAFT_0585 - anion transporter, at 584,727 to 586,235 _0585 Position (kb) 583 584 585Strain fitness (log2 ratio) -1 0 1 2at 582.243 kb on + strand, within EX28DRAFT_0583at 582.244 kb on - strand, within EX28DRAFT_0583at 582.244 kb on - strand, within EX28DRAFT_0583at 582.281 kb on + strand, within EX28DRAFT_0583at 582.416 kb on + strand, within EX28DRAFT_0583at 582.416 kb on + strand, within EX28DRAFT_0583at 582.506 kb on + strand, within EX28DRAFT_0583at 582.506 kb on + strand, within EX28DRAFT_0583at 582.506 kb on + strand, within EX28DRAFT_0583at 582.506 kb on + strand, within EX28DRAFT_0583at 582.507 kb on - strand, within EX28DRAFT_0583at 582.612 kb on + strandat 582.613 kb on - strandat 582.632 kb on + strandat 582.632 kb on + strandat 582.632 kb on + strandat 582.632 kb on + strandat 582.632 kb on + strandat 582.633 kb on - strandat 582.633 kb on - strandat 582.633 kb on - strandat 582.691 kb on + strandat 582.745 kb on + strandat 582.757 kb on - strandat 582.771 kb on - strandat 582.809 kb on + strandat 582.810 kb on - strandat 582.813 kb on + strandat 582.874 kb on - strandat 582.874 kb on - strandat 582.892 kb on - strandat 582.933 kb on - strandat 582.933 kb on - strandat 583.183 kb on - strandat 583.233 kb on - strand, within EX28DRAFT_0584at 583.233 kb on - strand, within EX28DRAFT_0584at 583.233 kb on - strand, within EX28DRAFT_0584at 583.324 kb on + strand, within EX28DRAFT_0584at 583.436 kb on + strand, within EX28DRAFT_0584at 583.638 kb on + strand, within EX28DRAFT_0584at 583.638 kb on + strand, within EX28DRAFT_0584at 583.639 kb on - strand, within EX28DRAFT_0584at 583.641 kb on - strand, within EX28DRAFT_0584at 583.641 kb on - strand, within EX28DRAFT_0584at 583.796 kb on + strand, within EX28DRAFT_0584at 583.916 kb on + strand, within EX28DRAFT_0584at 584.088 kb on - strand, within EX28DRAFT_0584at 584.094 kb on - strand, within EX28DRAFT_0584at 584.162 kb on + strand, within EX28DRAFT_0584at 584.209 kb on - strand, within EX28DRAFT_0584at 584.210 kb on + strand, within EX28DRAFT_0584at 584.210 kb on + strand, within EX28DRAFT_0584at 584.210 kb on + strand, within EX28DRAFT_0584at 584.210 kb on + strand, within EX28DRAFT_0584at 584.210 kb on + strand, within EX28DRAFT_0584at 584.210 kb on + strand, within EX28DRAFT_0584at 584.210 kb on + strand, within EX28DRAFT_0584at 584.211 kb on - strand, within EX28DRAFT_0584at 584.211 kb on - strand, within EX28DRAFT_0584at 584.211 kb on - strand, within EX28DRAFT_0584at 584.211 kb on - strand, within EX28DRAFT_0584at 584.211 kb on - strand, within EX28DRAFT_0584at 584.211 kb on - strand, within EX28DRAFT_0584at 584.211 kb on - strand, within EX28DRAFT_0584at 584.211 kb on - strand, within EX28DRAFT_0584at 584.238 kb on - strand, within EX28DRAFT_0584at 584.258 kb on + strand, within EX28DRAFT_0584at 584.258 kb on + strand, within EX28DRAFT_0584at 584.259 kb on - strand, within EX28DRAFT_0584at 584.259 kb on - strand, within EX28DRAFT_0584at 584.259 kb on - strand, within EX28DRAFT_0584at 584.266 kb on - strand, within EX28DRAFT_0584at 584.267 kb on + strand, within EX28DRAFT_0584at 584.267 kb on + strand, within EX28DRAFT_0584at 584.267 kb on + strand, within EX28DRAFT_0584at 584.268 kb on - strand, within EX28DRAFT_0584at 584.268 kb on - strand, within EX28DRAFT_0584at 584.268 kb on - strand, within EX28DRAFT_0584at 584.268 kb on - strand, within EX28DRAFT_0584at 584.329 kb on - strand, within EX28DRAFT_0584at 584.420 kb on + strand, within EX28DRAFT_0584at 584.420 kb on + strand, within EX28DRAFT_0584at 584.420 kb on + strand, within EX28DRAFT_0584at 584.420 kb on + strand, within EX28DRAFT_0584at 584.421 kb on - strand, within EX28DRAFT_0584at 584.609 kb on + strandat 584.609 kb on + strandat 584.609 kb on + strandat 584.610 kb on - strandat 584.610 kb on - strandat 584.664 kb on + strandat 584.673 kb on + strandat 584.673 kb on + strandat 584.674 kb on - strandat 584.677 kb on - strandat 584.677 kb on - strandat 584.677 kb on - strandat 584.677 kb on - strandat 584.846 kb on - strandat 585.025 kb on + strand, within EX28DRAFT_0585at 585.025 kb on + strand, within EX28DRAFT_0585at 585.026 kb on - strand, within EX28DRAFT_0585at 585.099 kb on + strand, within EX28DRAFT_0585at 585.415 kb on + strand, within EX28DRAFT_0585at 585.500 kb on + strand, within EX28DRAFT_0585at 585.500 kb on + strand, within EX28DRAFT_0585at 585.501 kb on - strand, within EX28DRAFT_0585at 585.501 kb on - strand, within EX28DRAFT_0585at 585.582 kb on - strand, within EX28DRAFT_0585at 585.582 kb on - strand, within EX28DRAFT_0585at 585.613 kb on + strand, within EX28DRAFT_0585at 585.614 kb on - strand, within EX28DRAFT_0585at 585.614 kb on - strand, within EX28DRAFT_0585at 585.627 kb on - strand, within EX28DRAFT_0585

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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582,243 + EX28DRAFT_0583 0.62 -1.2
582,244 - EX28DRAFT_0583 0.62 +0.9
582,244 - EX28DRAFT_0583 0.62 +0.0
582,281 + EX28DRAFT_0583 0.65 +1.2
582,416 + EX28DRAFT_0583 0.75 -0.1
582,416 + EX28DRAFT_0583 0.75 -0.8
582,506 + EX28DRAFT_0583 0.82 -0.4
582,506 + EX28DRAFT_0583 0.82 +0.7
582,506 + EX28DRAFT_0583 0.82 -0.6
582,506 + EX28DRAFT_0583 0.82 -0.6
582,507 - EX28DRAFT_0583 0.82 -0.2
582,612 + +0.0
582,613 - +1.3
582,632 + -0.1
582,632 + +0.9
582,632 + +0.8
582,632 + +0.6
582,632 + +1.0
582,633 - +0.1
582,633 - +0.3
582,633 - -0.2
582,691 + +0.1
582,745 + -0.1
582,757 - +0.2
582,771 - -0.1
582,809 + -0.2
582,810 - -0.3
582,813 + +0.2
582,874 - +1.2
582,874 - +0.8
582,892 - +0.2
582,933 - -0.1
582,933 - -0.4
583,183 - -0.5
583,233 - EX28DRAFT_0584 0.13 +0.2
583,233 - EX28DRAFT_0584 0.13 +2.0
583,233 - EX28DRAFT_0584 0.13 -0.1
583,324 + EX28DRAFT_0584 0.18 +0.0
583,436 + EX28DRAFT_0584 0.25 +0.1
583,638 + EX28DRAFT_0584 0.37 -0.8
583,638 + EX28DRAFT_0584 0.37 -0.1
583,639 - EX28DRAFT_0584 0.37 -0.0
583,641 - EX28DRAFT_0584 0.37 -0.6
583,641 - EX28DRAFT_0584 0.37 +0.1
583,796 + EX28DRAFT_0584 0.47 +0.2
583,916 + EX28DRAFT_0584 0.54 +0.2
584,088 - EX28DRAFT_0584 0.64 -0.6
584,094 - EX28DRAFT_0584 0.65 +0.3
584,162 + EX28DRAFT_0584 0.69 +0.0
584,209 - EX28DRAFT_0584 0.72 +0.0
584,210 + EX28DRAFT_0584 0.72 +0.0
584,210 + EX28DRAFT_0584 0.72 -1.1
584,210 + EX28DRAFT_0584 0.72 +0.2
584,210 + EX28DRAFT_0584 0.72 +0.2
584,210 + EX28DRAFT_0584 0.72 +0.0
584,210 + EX28DRAFT_0584 0.72 -0.0
584,210 + EX28DRAFT_0584 0.72 +0.3
584,211 - EX28DRAFT_0584 0.72 +0.2
584,211 - EX28DRAFT_0584 0.72 -0.2
584,211 - EX28DRAFT_0584 0.72 +0.2
584,211 - EX28DRAFT_0584 0.72 +0.0
584,211 - EX28DRAFT_0584 0.72 +0.4
584,211 - EX28DRAFT_0584 0.72 +0.4
584,211 - EX28DRAFT_0584 0.72 -0.1
584,211 - EX28DRAFT_0584 0.72 +1.0
584,238 - EX28DRAFT_0584 0.74 -0.0
584,258 + EX28DRAFT_0584 0.75 +0.2
584,258 + EX28DRAFT_0584 0.75 +0.5
584,259 - EX28DRAFT_0584 0.75 +0.3
584,259 - EX28DRAFT_0584 0.75 +0.9
584,259 - EX28DRAFT_0584 0.75 -0.4
584,266 - EX28DRAFT_0584 0.75 +0.2
584,267 + EX28DRAFT_0584 0.75 +0.1
584,267 + EX28DRAFT_0584 0.75 +0.4
584,267 + EX28DRAFT_0584 0.75 -0.2
584,268 - EX28DRAFT_0584 0.75 -0.1
584,268 - EX28DRAFT_0584 0.75 -0.5
584,268 - EX28DRAFT_0584 0.75 +0.2
584,268 - EX28DRAFT_0584 0.75 -1.0
584,329 - EX28DRAFT_0584 0.79 -0.0
584,420 + EX28DRAFT_0584 0.85 -0.0
584,420 + EX28DRAFT_0584 0.85 +0.3
584,420 + EX28DRAFT_0584 0.85 +0.2
584,420 + EX28DRAFT_0584 0.85 +0.4
584,421 - EX28DRAFT_0584 0.85 -0.3
584,609 + +0.2
584,609 + -1.6
584,609 + +0.1
584,610 - +0.1
584,610 - +0.6
584,664 + +0.5
584,673 + -0.2
584,673 + -0.2
584,674 - -0.2
584,677 - +0.0
584,677 - -0.4
584,677 - -0.1
584,677 - -0.1
584,846 - -0.8
585,025 + EX28DRAFT_0585 0.20 +0.0
585,025 + EX28DRAFT_0585 0.20 -1.6
585,026 - EX28DRAFT_0585 0.20 -0.2
585,099 + EX28DRAFT_0585 0.25 -0.6
585,415 + EX28DRAFT_0585 0.46 +0.5
585,500 + EX28DRAFT_0585 0.51 -0.6
585,500 + EX28DRAFT_0585 0.51 -0.4
585,501 - EX28DRAFT_0585 0.51 +0.0
585,501 - EX28DRAFT_0585 0.51 +0.1
585,582 - EX28DRAFT_0585 0.57 +0.1
585,582 - EX28DRAFT_0585 0.57 -0.0
585,613 + EX28DRAFT_0585 0.59 +0.1
585,614 - EX28DRAFT_0585 0.59 +0.0
585,614 - EX28DRAFT_0585 0.59 -1.1
585,627 - EX28DRAFT_0585 0.60 +1.3

Or see this region's nucleotide sequence