Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0257 and EX28DRAFT_0258 overlap by 1 nucleotides EX28DRAFT_0258 and EX28DRAFT_0259 are separated by 42 nucleotides
EX28DRAFT_0257: EX28DRAFT_0257 - Uncharacterized protein conserved in bacteria, at 215,977 to 219,456
_0257
EX28DRAFT_0258: EX28DRAFT_0258 - type VI secretion-associated protein, VC_A0119 family, at 219,456 to 221,057
_0258
EX28DRAFT_0259: EX28DRAFT_0259 - type VI secretion protein, VC_A0110 family, at 221,100 to 222,854
_0259
Position (kb) 219
220
221
222 Strain fitness (log2 ratio) -2
-1
0
1 at 218.534 kb on + strand, within EX28DRAFT_0257 at 218.575 kb on + strand, within EX28DRAFT_0257 at 218.575 kb on + strand, within EX28DRAFT_0257 at 218.812 kb on - strand, within EX28DRAFT_0257 at 218.828 kb on + strand, within EX28DRAFT_0257 at 218.828 kb on + strand, within EX28DRAFT_0257 at 218.828 kb on + strand, within EX28DRAFT_0257 at 219.038 kb on + strand, within EX28DRAFT_0257 at 219.039 kb on - strand, within EX28DRAFT_0257 at 219.050 kb on + strand, within EX28DRAFT_0257 at 219.050 kb on + strand, within EX28DRAFT_0257 at 219.077 kb on - strand, within EX28DRAFT_0257 at 219.127 kb on + strand at 219.128 kb on - strand at 219.128 kb on - strand at 219.128 kb on - strand at 219.130 kb on - strand at 219.271 kb on + strand at 219.271 kb on + strand at 219.271 kb on + strand at 219.272 kb on - strand at 219.272 kb on - strand at 219.272 kb on - strand at 219.618 kb on - strand, within EX28DRAFT_0258 at 219.618 kb on - strand, within EX28DRAFT_0258 at 219.619 kb on + strand, within EX28DRAFT_0258 at 219.619 kb on + strand, within EX28DRAFT_0258 at 219.713 kb on + strand, within EX28DRAFT_0258 at 219.723 kb on + strand, within EX28DRAFT_0258 at 219.723 kb on + strand, within EX28DRAFT_0258 at 219.724 kb on - strand, within EX28DRAFT_0258 at 219.724 kb on - strand, within EX28DRAFT_0258 at 219.726 kb on + strand, within EX28DRAFT_0258 at 219.927 kb on - strand, within EX28DRAFT_0258 at 220.011 kb on + strand, within EX28DRAFT_0258 at 220.079 kb on + strand, within EX28DRAFT_0258 at 220.191 kb on + strand, within EX28DRAFT_0258 at 220.372 kb on + strand, within EX28DRAFT_0258 at 220.437 kb on + strand, within EX28DRAFT_0258 at 220.438 kb on - strand, within EX28DRAFT_0258 at 220.438 kb on - strand, within EX28DRAFT_0258 at 220.438 kb on - strand, within EX28DRAFT_0258 at 220.438 kb on - strand, within EX28DRAFT_0258 at 220.489 kb on - strand, within EX28DRAFT_0258 at 220.613 kb on + strand, within EX28DRAFT_0258 at 220.613 kb on + strand, within EX28DRAFT_0258 at 221.086 kb on - strand at 221.090 kb on + strand at 221.125 kb on - strand at 221.233 kb on - strand at 221.267 kb on - strand at 221.346 kb on + strand, within EX28DRAFT_0259 at 221.346 kb on + strand, within EX28DRAFT_0259 at 221.421 kb on - strand, within EX28DRAFT_0259 at 221.442 kb on - strand, within EX28DRAFT_0259 at 221.579 kb on + strand, within EX28DRAFT_0259 at 221.580 kb on - strand, within EX28DRAFT_0259 at 221.634 kb on + strand, within EX28DRAFT_0259 at 221.635 kb on - strand, within EX28DRAFT_0259 at 221.872 kb on + strand, within EX28DRAFT_0259 at 222.006 kb on - strand, within EX28DRAFT_0259 at 222.006 kb on - strand, within EX28DRAFT_0259 at 222.006 kb on - strand, within EX28DRAFT_0259 at 222.010 kb on + strand, within EX28DRAFT_0259 at 222.011 kb on - strand, within EX28DRAFT_0259 at 222.011 kb on - strand, within EX28DRAFT_0259 at 222.011 kb on - strand, within EX28DRAFT_0259
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 218,534 + EX28DRAFT_0257 0.73 +0.4 218,575 + EX28DRAFT_0257 0.75 -0.1 218,575 + EX28DRAFT_0257 0.75 -0.2 218,812 - EX28DRAFT_0257 0.81 -0.6 218,828 + EX28DRAFT_0257 0.82 -0.2 218,828 + EX28DRAFT_0257 0.82 +0.5 218,828 + EX28DRAFT_0257 0.82 -2.0 219,038 + EX28DRAFT_0257 0.88 -0.6 219,039 - EX28DRAFT_0257 0.88 -0.0 219,050 + EX28DRAFT_0257 0.88 +0.1 219,050 + EX28DRAFT_0257 0.88 +0.3 219,077 - EX28DRAFT_0257 0.89 -0.1 219,127 + -0.3 219,128 - +0.1 219,128 - +1.3 219,128 - -0.4 219,130 - -0.1 219,271 + -0.4 219,271 + -0.1 219,271 + +0.8 219,272 - -0.2 219,272 - -0.5 219,272 - +0.9 219,618 - EX28DRAFT_0258 0.10 +0.1 219,618 - EX28DRAFT_0258 0.10 +0.3 219,619 + EX28DRAFT_0258 0.10 -0.9 219,619 + EX28DRAFT_0258 0.10 +0.7 219,713 + EX28DRAFT_0258 0.16 +0.5 219,723 + EX28DRAFT_0258 0.17 -0.0 219,723 + EX28DRAFT_0258 0.17 -0.2 219,724 - EX28DRAFT_0258 0.17 +0.3 219,724 - EX28DRAFT_0258 0.17 -0.4 219,726 + EX28DRAFT_0258 0.17 +0.5 219,927 - EX28DRAFT_0258 0.29 -0.6 220,011 + EX28DRAFT_0258 0.35 +0.5 220,079 + EX28DRAFT_0258 0.39 +0.1 220,191 + EX28DRAFT_0258 0.46 -0.3 220,372 + EX28DRAFT_0258 0.57 +0.4 220,437 + EX28DRAFT_0258 0.61 -0.1 220,438 - EX28DRAFT_0258 0.61 +1.2 220,438 - EX28DRAFT_0258 0.61 +0.0 220,438 - EX28DRAFT_0258 0.61 -0.1 220,438 - EX28DRAFT_0258 0.61 +0.0 220,489 - EX28DRAFT_0258 0.64 +0.9 220,613 + EX28DRAFT_0258 0.72 +0.8 220,613 + EX28DRAFT_0258 0.72 -0.0 221,086 - -0.4 221,090 + +0.6 221,125 - +0.1 221,233 - -0.5 221,267 - +0.1 221,346 + EX28DRAFT_0259 0.14 +0.5 221,346 + EX28DRAFT_0259 0.14 -0.3 221,421 - EX28DRAFT_0259 0.18 +0.2 221,442 - EX28DRAFT_0259 0.19 -0.8 221,579 + EX28DRAFT_0259 0.27 +0.3 221,580 - EX28DRAFT_0259 0.27 +0.5 221,634 + EX28DRAFT_0259 0.30 -0.1 221,635 - EX28DRAFT_0259 0.30 -1.0 221,872 + EX28DRAFT_0259 0.44 +0.5 222,006 - EX28DRAFT_0259 0.52 -0.5 222,006 - EX28DRAFT_0259 0.52 +0.0 222,006 - EX28DRAFT_0259 0.52 -0.1 222,010 + EX28DRAFT_0259 0.52 +0.1 222,011 - EX28DRAFT_0259 0.52 -0.2 222,011 - EX28DRAFT_0259 0.52 -0.0 222,011 - EX28DRAFT_0259 0.52 +1.1
Or see this region's nucleotide sequence