Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0248

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0246 and EX28DRAFT_0247 are separated by 5 nucleotidesEX28DRAFT_0247 and EX28DRAFT_0248 are separated by 157 nucleotidesEX28DRAFT_0248 and EX28DRAFT_0249 overlap by 4 nucleotides EX28DRAFT_0246: EX28DRAFT_0246 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 200,651 to 202,357 _0246 EX28DRAFT_0247: EX28DRAFT_0247 - type VI secretion system effector, Hcp1 family, at 202,363 to 202,854 _0247 EX28DRAFT_0248: EX28DRAFT_0248 - type VI secretion ATPase, ClpV1 family, at 203,012 to 205,666 _0248 EX28DRAFT_0249: EX28DRAFT_0249 - Rhs element Vgr protein, at 205,663 to 208,035 _0249 Position (kb) 203 204 205 206Strain fitness (log2 ratio) -1 0 1 2at 202.098 kb on + strand, within EX28DRAFT_0246at 202.339 kb on - strandat 202.359 kb on + strandat 202.414 kb on - strand, within EX28DRAFT_0247at 202.474 kb on - strand, within EX28DRAFT_0247at 202.474 kb on - strand, within EX28DRAFT_0247at 202.481 kb on - strand, within EX28DRAFT_0247at 202.481 kb on - strand, within EX28DRAFT_0247at 202.579 kb on + strand, within EX28DRAFT_0247at 202.580 kb on - strand, within EX28DRAFT_0247at 202.631 kb on - strand, within EX28DRAFT_0247at 202.663 kb on + strand, within EX28DRAFT_0247at 202.718 kb on - strand, within EX28DRAFT_0247at 202.718 kb on - strand, within EX28DRAFT_0247at 202.718 kb on - strand, within EX28DRAFT_0247at 203.035 kb on - strandat 203.134 kb on - strandat 203.783 kb on - strand, within EX28DRAFT_0248at 203.928 kb on + strand, within EX28DRAFT_0248at 203.960 kb on - strand, within EX28DRAFT_0248at 204.043 kb on + strand, within EX28DRAFT_0248at 204.046 kb on + strand, within EX28DRAFT_0248at 204.072 kb on - strand, within EX28DRAFT_0248at 204.080 kb on + strand, within EX28DRAFT_0248at 204.081 kb on - strand, within EX28DRAFT_0248at 204.081 kb on - strand, within EX28DRAFT_0248at 204.123 kb on + strand, within EX28DRAFT_0248at 204.209 kb on - strand, within EX28DRAFT_0248at 204.238 kb on + strand, within EX28DRAFT_0248at 204.323 kb on - strand, within EX28DRAFT_0248at 204.323 kb on - strand, within EX28DRAFT_0248at 204.559 kb on + strand, within EX28DRAFT_0248at 204.561 kb on + strand, within EX28DRAFT_0248at 204.561 kb on + strand, within EX28DRAFT_0248at 204.917 kb on + strand, within EX28DRAFT_0248at 204.917 kb on + strand, within EX28DRAFT_0248at 204.940 kb on + strand, within EX28DRAFT_0248at 204.960 kb on - strand, within EX28DRAFT_0248at 205.007 kb on + strand, within EX28DRAFT_0248at 205.121 kb on + strand, within EX28DRAFT_0248at 205.269 kb on + strand, within EX28DRAFT_0248at 205.514 kb on - strandat 205.558 kb on - strandat 205.558 kb on - strandat 205.604 kb on - strandat 205.648 kb on - strandat 205.682 kb on + strandat 206.035 kb on + strand, within EX28DRAFT_0249at 206.035 kb on + strand, within EX28DRAFT_0249at 206.036 kb on - strand, within EX28DRAFT_0249at 206.036 kb on - strand, within EX28DRAFT_0249at 206.124 kb on - strand, within EX28DRAFT_0249at 206.158 kb on + strand, within EX28DRAFT_0249at 206.159 kb on - strand, within EX28DRAFT_0249at 206.245 kb on - strand, within EX28DRAFT_0249at 206.263 kb on + strand, within EX28DRAFT_0249at 206.404 kb on + strand, within EX28DRAFT_0249at 206.404 kb on + strand, within EX28DRAFT_0249at 206.410 kb on + strand, within EX28DRAFT_0249at 206.411 kb on - strand, within EX28DRAFT_0249at 206.411 kb on - strand, within EX28DRAFT_0249at 206.431 kb on - strand, within EX28DRAFT_0249at 206.436 kb on + strand, within EX28DRAFT_0249at 206.437 kb on - strand, within EX28DRAFT_0249at 206.473 kb on + strand, within EX28DRAFT_0249at 206.491 kb on + strand, within EX28DRAFT_0249at 206.503 kb on + strand, within EX28DRAFT_0249at 206.504 kb on - strand, within EX28DRAFT_0249at 206.504 kb on - strand, within EX28DRAFT_0249at 206.504 kb on - strand, within EX28DRAFT_0249at 206.525 kb on - strand, within EX28DRAFT_0249

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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202,098 + EX28DRAFT_0246 0.85 -0.3
202,339 - +0.1
202,359 + +0.1
202,414 - EX28DRAFT_0247 0.10 +0.1
202,474 - EX28DRAFT_0247 0.23 -0.9
202,474 - EX28DRAFT_0247 0.23 +0.6
202,481 - EX28DRAFT_0247 0.24 -0.0
202,481 - EX28DRAFT_0247 0.24 +1.1
202,579 + EX28DRAFT_0247 0.44 -0.5
202,580 - EX28DRAFT_0247 0.44 +0.5
202,631 - EX28DRAFT_0247 0.54 +0.9
202,663 + EX28DRAFT_0247 0.61 -0.6
202,718 - EX28DRAFT_0247 0.72 -0.1
202,718 - EX28DRAFT_0247 0.72 -0.1
202,718 - EX28DRAFT_0247 0.72 -0.1
203,035 - +0.8
203,134 - +0.7
203,783 - EX28DRAFT_0248 0.29 +0.3
203,928 + EX28DRAFT_0248 0.35 -0.3
203,960 - EX28DRAFT_0248 0.36 +0.3
204,043 + EX28DRAFT_0248 0.39 -0.5
204,046 + EX28DRAFT_0248 0.39 +0.0
204,072 - EX28DRAFT_0248 0.40 +0.3
204,080 + EX28DRAFT_0248 0.40 +0.5
204,081 - EX28DRAFT_0248 0.40 +0.3
204,081 - EX28DRAFT_0248 0.40 +1.5
204,123 + EX28DRAFT_0248 0.42 +0.1
204,209 - EX28DRAFT_0248 0.45 +2.3
204,238 + EX28DRAFT_0248 0.46 +0.2
204,323 - EX28DRAFT_0248 0.49 -0.0
204,323 - EX28DRAFT_0248 0.49 +0.1
204,559 + EX28DRAFT_0248 0.58 +1.0
204,561 + EX28DRAFT_0248 0.58 -1.1
204,561 + EX28DRAFT_0248 0.58 +0.2
204,917 + EX28DRAFT_0248 0.72 -0.6
204,917 + EX28DRAFT_0248 0.72 -0.5
204,940 + EX28DRAFT_0248 0.73 +0.9
204,960 - EX28DRAFT_0248 0.73 +0.1
205,007 + EX28DRAFT_0248 0.75 -0.0
205,121 + EX28DRAFT_0248 0.79 +0.1
205,269 + EX28DRAFT_0248 0.85 +0.1
205,514 - -1.1
205,558 - +0.1
205,558 - -0.1
205,604 - -0.8
205,648 - -0.3
205,682 + -0.4
206,035 + EX28DRAFT_0249 0.16 -0.2
206,035 + EX28DRAFT_0249 0.16 +0.9
206,036 - EX28DRAFT_0249 0.16 -0.5
206,036 - EX28DRAFT_0249 0.16 +0.8
206,124 - EX28DRAFT_0249 0.19 +0.2
206,158 + EX28DRAFT_0249 0.21 -0.1
206,159 - EX28DRAFT_0249 0.21 +1.4
206,245 - EX28DRAFT_0249 0.25 +0.0
206,263 + EX28DRAFT_0249 0.25 -0.1
206,404 + EX28DRAFT_0249 0.31 -0.1
206,404 + EX28DRAFT_0249 0.31 +0.6
206,410 + EX28DRAFT_0249 0.31 +0.7
206,411 - EX28DRAFT_0249 0.32 -0.2
206,411 - EX28DRAFT_0249 0.32 +0.9
206,431 - EX28DRAFT_0249 0.32 +0.4
206,436 + EX28DRAFT_0249 0.33 +0.1
206,437 - EX28DRAFT_0249 0.33 -0.1
206,473 + EX28DRAFT_0249 0.34 -0.4
206,491 + EX28DRAFT_0249 0.35 -0.0
206,503 + EX28DRAFT_0249 0.35 +0.0
206,504 - EX28DRAFT_0249 0.35 +0.7
206,504 - EX28DRAFT_0249 0.35 +0.0
206,504 - EX28DRAFT_0249 0.35 +0.0
206,525 - EX28DRAFT_0249 0.36 -0.0

Or see this region's nucleotide sequence