Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0181

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0179 and EX28DRAFT_0180 are separated by 95 nucleotidesEX28DRAFT_0180 and EX28DRAFT_0181 overlap by 1 nucleotidesEX28DRAFT_0181 and EX28DRAFT_0182 are separated by 145 nucleotides EX28DRAFT_0179: EX28DRAFT_0179 - Predicted permease, at 129,221 to 130,285 _0179 EX28DRAFT_0180: EX28DRAFT_0180 - Peroxiredoxin, at 130,381 to 130,851 _0180 EX28DRAFT_0181: EX28DRAFT_0181 - Glycine cleavage system regulatory protein, at 130,851 to 131,420 _0181 EX28DRAFT_0182: EX28DRAFT_0182 - 4-hydroxy-tetrahydrodipicolinate synthase, at 131,566 to 132,444 _0182 Position (kb) 130 131 132Strain fitness (log2 ratio) -2 -1 0 1at 129.854 kb on + strand, within EX28DRAFT_0179at 129.855 kb on - strand, within EX28DRAFT_0179at 129.855 kb on - strand, within EX28DRAFT_0179at 129.855 kb on - strand, within EX28DRAFT_0179at 130.074 kb on - strand, within EX28DRAFT_0179at 130.082 kb on - strand, within EX28DRAFT_0179at 130.156 kb on + strand, within EX28DRAFT_0179at 130.157 kb on - strand, within EX28DRAFT_0179at 130.283 kb on + strandat 130.283 kb on + strandat 130.498 kb on - strand, within EX28DRAFT_0180at 130.555 kb on + strand, within EX28DRAFT_0180at 130.853 kb on - strandat 130.896 kb on + strandat 130.899 kb on - strandat 130.986 kb on - strand, within EX28DRAFT_0181at 131.055 kb on - strand, within EX28DRAFT_0181at 131.128 kb on - strand, within EX28DRAFT_0181at 131.268 kb on - strand, within EX28DRAFT_0181at 131.268 kb on - strand, within EX28DRAFT_0181at 131.270 kb on + strand, within EX28DRAFT_0181at 131.271 kb on - strand, within EX28DRAFT_0181at 131.316 kb on - strand, within EX28DRAFT_0181at 131.444 kb on - strandat 131.479 kb on + strandat 131.479 kb on + strandat 131.479 kb on + strandat 131.479 kb on + strandat 131.479 kb on + strandat 131.479 kb on + strandat 131.479 kb on + strandat 131.479 kb on + strandat 131.479 kb on + strandat 131.480 kb on - strandat 131.480 kb on - strandat 131.480 kb on - strandat 131.480 kb on - strandat 131.480 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
129,854 + EX28DRAFT_0179 0.59 +0.1
129,855 - EX28DRAFT_0179 0.60 -0.0
129,855 - EX28DRAFT_0179 0.60 -0.3
129,855 - EX28DRAFT_0179 0.60 +0.6
130,074 - EX28DRAFT_0179 0.80 +0.4
130,082 - EX28DRAFT_0179 0.81 +0.3
130,156 + EX28DRAFT_0179 0.88 -0.8
130,157 - EX28DRAFT_0179 0.88 +0.4
130,283 + +0.3
130,283 + +0.5
130,498 - EX28DRAFT_0180 0.25 +0.5
130,555 + EX28DRAFT_0180 0.37 -0.1
130,853 - +0.7
130,896 + -0.4
130,899 - -1.3
130,986 - EX28DRAFT_0181 0.24 -2.6
131,055 - EX28DRAFT_0181 0.36 -0.5
131,128 - EX28DRAFT_0181 0.49 -1.2
131,268 - EX28DRAFT_0181 0.73 -0.7
131,268 - EX28DRAFT_0181 0.73 -1.2
131,270 + EX28DRAFT_0181 0.74 -1.6
131,271 - EX28DRAFT_0181 0.74 -0.1
131,316 - EX28DRAFT_0181 0.82 -0.8
131,444 - -0.7
131,479 + +1.2
131,479 + -0.3
131,479 + -0.1
131,479 + -0.2
131,479 + -1.4
131,479 + -0.1
131,479 + +0.2
131,479 + -0.1
131,479 + -0.1
131,480 - -0.3
131,480 - +0.4
131,480 - +0.1
131,480 - -1.1
131,480 - +0.8

Or see this region's nucleotide sequence