Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01870 and CCNA_03895 are separated by 19 nucleotides CCNA_03895 and CCNA_01873 are separated by 8 nucleotides CCNA_01873 and CCNA_01874 are separated by 293 nucleotides
CCNA_01870: CCNA_01870 - NagC-family transcriptional regulator, at 2,008,780 to 2,009,934
_01870
CCNA_03895: CCNA_03895 - hypothetical protein, at 2,009,954 to 2,010,232
_03895
CCNA_01873: CCNA_01873 - magnesium and cobalt transport protein corA, at 2,010,241 to 2,010,474
_01873
CCNA_01874: CCNA_01874 - transposase, at 2,010,768 to 2,012,213
_01874
Position (kb)
2009
2010
2011 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2009.035 kb on + strand, within CCNA_01870 at 2009.035 kb on + strand, within CCNA_01870 at 2009.053 kb on + strand, within CCNA_01870 at 2009.058 kb on + strand, within CCNA_01870 at 2009.066 kb on - strand, within CCNA_01870 at 2009.077 kb on - strand, within CCNA_01870 at 2009.134 kb on - strand, within CCNA_01870 at 2009.157 kb on + strand, within CCNA_01870 at 2009.174 kb on + strand, within CCNA_01870 at 2009.223 kb on - strand, within CCNA_01870 at 2009.255 kb on + strand, within CCNA_01870 at 2009.255 kb on + strand, within CCNA_01870 at 2009.262 kb on + strand, within CCNA_01870 at 2009.263 kb on - strand, within CCNA_01870 at 2009.263 kb on - strand, within CCNA_01870 at 2009.263 kb on - strand, within CCNA_01870 at 2009.280 kb on - strand, within CCNA_01870 at 2009.281 kb on + strand, within CCNA_01870 at 2009.283 kb on - strand, within CCNA_01870 at 2009.289 kb on - strand, within CCNA_01870 at 2009.289 kb on - strand, within CCNA_01870 at 2009.294 kb on + strand, within CCNA_01870 at 2009.296 kb on + strand, within CCNA_01870 at 2009.296 kb on + strand, within CCNA_01870 at 2009.304 kb on - strand, within CCNA_01870 at 2009.353 kb on + strand, within CCNA_01870 at 2009.355 kb on - strand, within CCNA_01870 at 2009.355 kb on - strand, within CCNA_01870 at 2009.361 kb on - strand, within CCNA_01870 at 2009.363 kb on + strand, within CCNA_01870 at 2009.391 kb on - strand, within CCNA_01870 at 2009.400 kb on + strand, within CCNA_01870 at 2009.417 kb on + strand, within CCNA_01870 at 2009.425 kb on - strand, within CCNA_01870 at 2009.439 kb on - strand, within CCNA_01870 at 2009.439 kb on - strand, within CCNA_01870 at 2009.439 kb on - strand, within CCNA_01870 at 2009.473 kb on - strand, within CCNA_01870 at 2009.603 kb on - strand, within CCNA_01870 at 2009.661 kb on - strand, within CCNA_01870 at 2009.708 kb on + strand, within CCNA_01870 at 2009.787 kb on + strand, within CCNA_01870 at 2009.817 kb on + strand, within CCNA_01870 at 2009.817 kb on + strand, within CCNA_01870 at 2009.817 kb on + strand, within CCNA_01870 at 2009.825 kb on - strand at 2009.825 kb on - strand at 2009.825 kb on - strand at 2009.861 kb on + strand at 2009.919 kb on + strand at 2009.935 kb on + strand at 2009.943 kb on - strand at 2009.957 kb on - strand at 2010.002 kb on + strand, within CCNA_03895 at 2010.002 kb on + strand, within CCNA_03895 at 2010.010 kb on - strand, within CCNA_03895 at 2010.010 kb on - strand, within CCNA_03895 at 2010.010 kb on - strand, within CCNA_03895 at 2010.010 kb on - strand, within CCNA_03895 at 2010.010 kb on - strand, within CCNA_03895 at 2010.010 kb on - strand, within CCNA_03895 at 2010.017 kb on - strand, within CCNA_03895 at 2010.051 kb on - strand, within CCNA_03895 at 2010.059 kb on + strand, within CCNA_03895 at 2010.106 kb on + strand, within CCNA_03895 at 2010.106 kb on + strand, within CCNA_03895 at 2010.114 kb on - strand, within CCNA_03895 at 2010.114 kb on - strand, within CCNA_03895 at 2010.114 kb on - strand, within CCNA_03895 at 2010.171 kb on - strand, within CCNA_03895 at 2010.203 kb on - strand, within CCNA_03895 at 2010.203 kb on - strand, within CCNA_03895 at 2010.238 kb on - strand at 2010.248 kb on + strand at 2010.248 kb on + strand at 2010.248 kb on + strand at 2010.256 kb on - strand at 2010.256 kb on - strand at 2010.256 kb on - strand at 2010.256 kb on - strand at 2010.276 kb on - strand, within CCNA_01873 at 2010.281 kb on - strand, within CCNA_01873 at 2010.316 kb on - strand, within CCNA_01873 at 2010.348 kb on + strand, within CCNA_01873 at 2010.361 kb on - strand, within CCNA_01873 at 2010.385 kb on - strand, within CCNA_01873 at 2010.385 kb on - strand, within CCNA_01873 at 2010.468 kb on - strand at 2010.487 kb on + strand at 2010.495 kb on - strand at 2010.508 kb on + strand at 2010.521 kb on - strand at 2010.575 kb on - strand at 2010.577 kb on - strand at 2010.597 kb on - strand at 2010.597 kb on - strand at 2010.637 kb on - strand at 2010.660 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,009,035 + CCNA_01870 0.22 -1.4 2,009,035 + CCNA_01870 0.22 -0.8 2,009,053 + CCNA_01870 0.24 -0.1 2,009,058 + CCNA_01870 0.24 -0.4 2,009,066 - CCNA_01870 0.25 +0.4 2,009,077 - CCNA_01870 0.26 +1.6 2,009,134 - CCNA_01870 0.31 +1.1 2,009,157 + CCNA_01870 0.33 -0.6 2,009,174 + CCNA_01870 0.34 -0.2 2,009,223 - CCNA_01870 0.38 +0.4 2,009,255 + CCNA_01870 0.41 +0.8 2,009,255 + CCNA_01870 0.41 -1.2 2,009,262 + CCNA_01870 0.42 -0.5 2,009,263 - CCNA_01870 0.42 +0.1 2,009,263 - CCNA_01870 0.42 +0.0 2,009,263 - CCNA_01870 0.42 -1.9 2,009,280 - CCNA_01870 0.43 +0.3 2,009,281 + CCNA_01870 0.43 -0.4 2,009,283 - CCNA_01870 0.44 -0.6 2,009,289 - CCNA_01870 0.44 -0.0 2,009,289 - CCNA_01870 0.44 -1.1 2,009,294 + CCNA_01870 0.45 -0.8 2,009,296 + CCNA_01870 0.45 -2.0 2,009,296 + CCNA_01870 0.45 +0.2 2,009,304 - CCNA_01870 0.45 +0.8 2,009,353 + CCNA_01870 0.50 +0.8 2,009,355 - CCNA_01870 0.50 -0.5 2,009,355 - CCNA_01870 0.50 +0.0 2,009,361 - CCNA_01870 0.50 -0.7 2,009,363 + CCNA_01870 0.50 -0.5 2,009,391 - CCNA_01870 0.53 +0.9 2,009,400 + CCNA_01870 0.54 -0.4 2,009,417 + CCNA_01870 0.55 -0.8 2,009,425 - CCNA_01870 0.56 +0.1 2,009,439 - CCNA_01870 0.57 +0.0 2,009,439 - CCNA_01870 0.57 -0.7 2,009,439 - CCNA_01870 0.57 -0.4 2,009,473 - CCNA_01870 0.60 -0.2 2,009,603 - CCNA_01870 0.71 +0.4 2,009,661 - CCNA_01870 0.76 +1.0 2,009,708 + CCNA_01870 0.80 -0.4 2,009,787 + CCNA_01870 0.87 +0.3 2,009,817 + CCNA_01870 0.90 +0.5 2,009,817 + CCNA_01870 0.90 -0.4 2,009,817 + CCNA_01870 0.90 +1.4 2,009,825 - +0.0 2,009,825 - -1.6 2,009,825 - +0.9 2,009,861 + -1.1 2,009,919 + +0.6 2,009,935 + -2.8 2,009,943 - -1.3 2,009,957 - -0.4 2,010,002 + CCNA_03895 0.17 -0.7 2,010,002 + CCNA_03895 0.17 -1.1 2,010,010 - CCNA_03895 0.20 +0.0 2,010,010 - CCNA_03895 0.20 -0.4 2,010,010 - CCNA_03895 0.20 +0.6 2,010,010 - CCNA_03895 0.20 +2.8 2,010,010 - CCNA_03895 0.20 -0.6 2,010,010 - CCNA_03895 0.20 +0.2 2,010,017 - CCNA_03895 0.23 -0.4 2,010,051 - CCNA_03895 0.35 -1.8 2,010,059 + CCNA_03895 0.38 -1.8 2,010,106 + CCNA_03895 0.54 -1.3 2,010,106 + CCNA_03895 0.54 -0.9 2,010,114 - CCNA_03895 0.57 -0.4 2,010,114 - CCNA_03895 0.57 -2.2 2,010,114 - CCNA_03895 0.57 -0.1 2,010,171 - CCNA_03895 0.78 -1.0 2,010,203 - CCNA_03895 0.89 +0.4 2,010,203 - CCNA_03895 0.89 +0.6 2,010,238 - -1.5 2,010,248 + +0.2 2,010,248 + -0.6 2,010,248 + +0.8 2,010,256 - -0.2 2,010,256 - +1.3 2,010,256 - -1.4 2,010,256 - +0.0 2,010,276 - CCNA_01873 0.15 +2.0 2,010,281 - CCNA_01873 0.17 +1.4 2,010,316 - CCNA_01873 0.32 -0.4 2,010,348 + CCNA_01873 0.46 -0.2 2,010,361 - CCNA_01873 0.51 -0.8 2,010,385 - CCNA_01873 0.62 +0.2 2,010,385 - CCNA_01873 0.62 +1.2 2,010,468 - -0.6 2,010,487 + -0.8 2,010,495 - -0.2 2,010,508 + -0.1 2,010,521 - +0.1 2,010,575 - -1.3 2,010,577 - -0.3 2,010,597 - -1.4 2,010,597 - +0.4 2,010,637 - +0.8 2,010,660 - -0.1
Or see this region's nucleotide sequence