Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00866 and CCNA_00867 are separated by 186 nucleotides CCNA_00867 and CCNA_03889 are separated by 254 nucleotides CCNA_03889 and CCNA_00869 are separated by 157 nucleotides
CCNA_00866: CCNA_00866 - fumarylacetoacetate hydrolase family protein, at 944,663 to 945,817
_00866
CCNA_00867: CCNA_00867 - hypothetical protein, at 946,004 to 946,492
_00867
CCNA_03889: CCNA_03889 - hypothetical protein, at 946,747 to 947,268
_03889
CCNA_00869: CCNA_00869 - DNA modification methyltransferase-related protein, at 947,426 to 950,383
_00869
Position (kb) 946
947
948 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 945.918 kb on - strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.963 kb on + strand at 945.993 kb on + strand at 945.993 kb on + strand at 945.996 kb on - strand at 946.057 kb on + strand, within CCNA_00867 at 946.057 kb on + strand, within CCNA_00867 at 946.057 kb on + strand, within CCNA_00867 at 946.115 kb on - strand, within CCNA_00867 at 946.134 kb on - strand, within CCNA_00867 at 946.143 kb on + strand, within CCNA_00867 at 946.151 kb on - strand, within CCNA_00867 at 946.172 kb on + strand, within CCNA_00867 at 946.190 kb on + strand, within CCNA_00867 at 946.190 kb on + strand, within CCNA_00867 at 946.200 kb on + strand, within CCNA_00867 at 946.232 kb on + strand, within CCNA_00867 at 946.244 kb on + strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.352 kb on + strand, within CCNA_00867 at 946.376 kb on + strand, within CCNA_00867 at 946.376 kb on + strand, within CCNA_00867 at 946.376 kb on + strand, within CCNA_00867 at 946.381 kb on + strand, within CCNA_00867 at 946.384 kb on - strand, within CCNA_00867 at 946.413 kb on - strand, within CCNA_00867 at 946.415 kb on + strand, within CCNA_00867 at 946.425 kb on + strand, within CCNA_00867 at 946.430 kb on + strand, within CCNA_00867 at 946.487 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.540 kb on + strand at 946.548 kb on - strand at 946.548 kb on - strand at 946.589 kb on + strand at 946.645 kb on + strand at 946.656 kb on + strand at 946.664 kb on - strand at 946.664 kb on - strand at 946.664 kb on - strand at 946.664 kb on - strand at 946.665 kb on - strand at 946.711 kb on - strand at 946.769 kb on - strand at 946.797 kb on - strand at 946.813 kb on - strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.869 kb on + strand, within CCNA_03889 at 946.907 kb on + strand, within CCNA_03889 at 946.907 kb on + strand, within CCNA_03889 at 946.917 kb on + strand, within CCNA_03889 at 946.917 kb on + strand, within CCNA_03889 at 946.917 kb on + strand, within CCNA_03889 at 946.917 kb on + strand, within CCNA_03889 at 946.917 kb on + strand, within CCNA_03889 at 946.925 kb on - strand, within CCNA_03889 at 946.925 kb on - strand, within CCNA_03889 at 946.925 kb on - strand, within CCNA_03889 at 946.925 kb on - strand, within CCNA_03889 at 946.952 kb on + strand, within CCNA_03889 at 946.952 kb on - strand, within CCNA_03889 at 946.963 kb on + strand, within CCNA_03889 at 946.971 kb on - strand, within CCNA_03889 at 946.978 kb on + strand, within CCNA_03889 at 946.986 kb on - strand, within CCNA_03889 at 946.999 kb on - strand, within CCNA_03889 at 947.004 kb on - strand, within CCNA_03889 at 947.009 kb on - strand, within CCNA_03889 at 947.017 kb on + strand, within CCNA_03889 at 947.029 kb on + strand, within CCNA_03889 at 947.031 kb on + strand, within CCNA_03889 at 947.037 kb on - strand, within CCNA_03889 at 947.037 kb on - strand, within CCNA_03889 at 947.037 kb on - strand, within CCNA_03889 at 947.062 kb on - strand, within CCNA_03889 at 947.088 kb on + strand, within CCNA_03889 at 947.101 kb on + strand, within CCNA_03889 at 947.115 kb on - strand, within CCNA_03889 at 947.115 kb on - strand, within CCNA_03889 at 947.172 kb on - strand, within CCNA_03889 at 947.172 kb on - strand, within CCNA_03889 at 947.203 kb on + strand, within CCNA_03889 at 947.237 kb on + strand at 947.237 kb on + strand at 947.247 kb on + strand at 947.255 kb on - strand at 947.257 kb on + strand at 947.262 kb on + strand at 947.262 kb on + strand at 947.262 kb on + strand at 947.269 kb on + strand at 947.270 kb on - strand at 947.270 kb on - strand at 947.270 kb on - strand at 947.314 kb on - strand at 947.355 kb on + strand at 947.356 kb on + strand at 947.399 kb on - strand at 947.409 kb on - strand at 947.414 kb on - strand at 947.417 kb on + strand at 947.418 kb on + strand at 947.418 kb on + strand at 947.419 kb on + strand at 947.426 kb on - strand at 947.426 kb on - strand at 947.426 kb on - strand at 947.426 kb on - strand at 947.426 kb on - strand at 947.427 kb on - strand at 947.515 kb on - strand at 947.542 kb on + strand at 947.547 kb on + strand at 947.551 kb on + strand at 947.555 kb on - strand at 947.559 kb on - strand at 947.617 kb on + strand at 947.617 kb on + strand at 947.625 kb on - strand at 947.641 kb on + strand at 947.739 kb on + strand, within CCNA_00869 at 947.739 kb on + strand, within CCNA_00869 at 947.818 kb on + strand, within CCNA_00869 at 947.838 kb on + strand, within CCNA_00869 at 947.846 kb on - strand, within CCNA_00869 at 947.885 kb on + strand, within CCNA_00869 at 947.893 kb on - strand, within CCNA_00869 at 947.893 kb on - strand, within CCNA_00869 at 947.948 kb on + strand, within CCNA_00869 at 948.035 kb on + strand, within CCNA_00869 at 948.061 kb on + strand, within CCNA_00869 at 948.087 kb on + strand, within CCNA_00869 at 948.143 kb on + strand, within CCNA_00869 at 948.231 kb on - strand, within CCNA_00869 at 948.252 kb on + strand, within CCNA_00869
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 945,918 - +1.4 945,921 + -0.5 945,921 + -0.6 945,921 + -0.4 945,921 + +0.1 945,921 + -0.3 945,921 + -0.6 945,921 + -0.9 945,929 - +0.2 945,929 - -0.1 945,929 - +0.7 945,929 - -0.3 945,929 - -0.3 945,929 - +0.4 945,929 - -0.5 945,963 + +0.4 945,993 + -0.1 945,993 + -1.2 945,996 - -0.6 946,057 + CCNA_00867 0.11 +0.5 946,057 + CCNA_00867 0.11 +0.3 946,057 + CCNA_00867 0.11 +0.0 946,115 - CCNA_00867 0.23 -0.2 946,134 - CCNA_00867 0.27 -0.8 946,143 + CCNA_00867 0.28 -0.5 946,151 - CCNA_00867 0.30 -1.0 946,172 + CCNA_00867 0.34 +0.2 946,190 + CCNA_00867 0.38 +0.3 946,190 + CCNA_00867 0.38 +1.5 946,200 + CCNA_00867 0.40 +1.5 946,232 + CCNA_00867 0.47 +0.1 946,244 + CCNA_00867 0.49 -0.3 946,245 - CCNA_00867 0.49 -1.2 946,245 - CCNA_00867 0.49 +1.4 946,245 - CCNA_00867 0.49 -0.7 946,245 - CCNA_00867 0.49 +0.9 946,312 - CCNA_00867 0.63 +0.7 946,324 + CCNA_00867 0.65 +0.0 946,324 + CCNA_00867 0.65 +0.5 946,324 + CCNA_00867 0.65 +0.3 946,324 + CCNA_00867 0.65 +0.3 946,352 + CCNA_00867 0.71 +0.5 946,376 + CCNA_00867 0.76 +0.6 946,376 + CCNA_00867 0.76 -0.3 946,376 + CCNA_00867 0.76 +0.1 946,381 + CCNA_00867 0.77 +1.4 946,384 - CCNA_00867 0.78 -1.8 946,413 - CCNA_00867 0.84 -1.1 946,415 + CCNA_00867 0.84 -2.0 946,425 + CCNA_00867 0.86 -0.9 946,430 + CCNA_00867 0.87 -0.9 946,487 + +0.5 946,509 + -0.0 946,509 + +0.3 946,509 + -0.4 946,540 + -2.1 946,548 - -0.5 946,548 - -0.5 946,589 + -0.2 946,645 + +0.1 946,656 + -1.4 946,664 - +0.2 946,664 - -0.5 946,664 - +0.6 946,664 - +0.3 946,665 - -0.1 946,711 - +1.1 946,769 - -0.1 946,797 - +0.0 946,813 - CCNA_03889 0.13 -0.3 946,815 + CCNA_03889 0.13 +0.0 946,815 + CCNA_03889 0.13 -1.6 946,869 + CCNA_03889 0.23 +0.5 946,907 + CCNA_03889 0.31 +0.4 946,907 + CCNA_03889 0.31 +0.1 946,917 + CCNA_03889 0.33 -0.3 946,917 + CCNA_03889 0.33 +0.8 946,917 + CCNA_03889 0.33 +0.9 946,917 + CCNA_03889 0.33 +0.2 946,917 + CCNA_03889 0.33 +0.4 946,925 - CCNA_03889 0.34 -0.8 946,925 - CCNA_03889 0.34 -0.7 946,925 - CCNA_03889 0.34 -0.3 946,925 - CCNA_03889 0.34 +0.7 946,952 + CCNA_03889 0.39 +2.0 946,952 - CCNA_03889 0.39 -1.1 946,963 + CCNA_03889 0.41 +0.1 946,971 - CCNA_03889 0.43 -0.8 946,978 + CCNA_03889 0.44 -0.2 946,986 - CCNA_03889 0.46 -0.8 946,999 - CCNA_03889 0.48 +0.0 947,004 - CCNA_03889 0.49 +0.4 947,009 - CCNA_03889 0.50 +0.1 947,017 + CCNA_03889 0.52 +0.6 947,029 + CCNA_03889 0.54 -1.1 947,031 + CCNA_03889 0.54 -0.0 947,037 - CCNA_03889 0.56 -0.6 947,037 - CCNA_03889 0.56 -0.2 947,037 - CCNA_03889 0.56 +0.4 947,062 - CCNA_03889 0.60 -0.3 947,088 + CCNA_03889 0.65 -0.2 947,101 + CCNA_03889 0.68 -0.3 947,115 - CCNA_03889 0.70 +0.6 947,115 - CCNA_03889 0.70 -0.7 947,172 - CCNA_03889 0.81 -0.4 947,172 - CCNA_03889 0.81 -1.2 947,203 + CCNA_03889 0.87 -0.1 947,237 + +0.2 947,237 + +0.4 947,247 + +0.1 947,255 - -0.1 947,257 + -0.3 947,262 + +0.7 947,262 + -1.8 947,262 + +0.5 947,269 + -0.1 947,270 - +0.7 947,270 - +0.6 947,270 - -0.8 947,314 - -0.0 947,355 + -0.2 947,356 + +0.6 947,399 - +1.2 947,409 - +0.7 947,414 - -2.0 947,417 + +0.1 947,418 + +0.2 947,418 + +1.0 947,419 + +0.7 947,426 - +0.1 947,426 - +0.2 947,426 - -0.4 947,426 - +0.4 947,426 - +0.2 947,427 - +1.1 947,515 - +0.5 947,542 + -1.5 947,547 + +0.5 947,551 + -0.2 947,555 - +1.2 947,559 - +0.3 947,617 + -0.5 947,617 + -1.6 947,625 - +0.2 947,641 + +1.3 947,739 + CCNA_00869 0.11 -1.5 947,739 + CCNA_00869 0.11 +0.4 947,818 + CCNA_00869 0.13 -0.3 947,838 + CCNA_00869 0.14 -2.2 947,846 - CCNA_00869 0.14 +0.7 947,885 + CCNA_00869 0.16 -0.0 947,893 - CCNA_00869 0.16 -0.5 947,893 - CCNA_00869 0.16 +1.0 947,948 + CCNA_00869 0.18 -0.6 948,035 + CCNA_00869 0.21 -1.3 948,061 + CCNA_00869 0.21 -2.9 948,087 + CCNA_00869 0.22 +0.1 948,143 + CCNA_00869 0.24 -0.8 948,231 - CCNA_00869 0.27 +0.3 948,252 + CCNA_00869 0.28 +0.1
Or see this region's nucleotide sequence