Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03856 and CCNA_03857 overlap by 1 nucleotides CCNA_03857 and CCNA_03858 are separated by 145 nucleotides CCNA_03858 and CCNA_03859 are separated by 61 nucleotides CCNA_03859 and CCNA_03860 are separated by 73 nucleotides
CCNA_03856: CCNA_03856 - membrane-bound lytic murein transglycosylase A, at 4,019,778 to 4,020,965
_03856
CCNA_03857: CCNA_03857 - Tim44-like domain protein, at 4,020,965 to 4,021,567
_03857
CCNA_03858: CCNA_03858 - protein translocase subunit secB, at 4,021,713 to 4,022,204
_03858
CCNA_03859: CCNA_03859 - two-component response regulator cenR, at 4,022,266 to 4,022,952
_03859
CCNA_03860: CCNA_03860 - hypothetical protein, at 4,023,026 to 4,023,535
_03860
Position (kb)
4021
4022
4023 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4020.757 kb on - strand, within CCNA_03856 at 4020.767 kb on - strand, within CCNA_03856 at 4020.770 kb on + strand, within CCNA_03856 at 4020.857 kb on + strand at 4020.878 kb on + strand at 4020.890 kb on + strand at 4020.895 kb on + strand at 4020.946 kb on + strand at 4020.946 kb on + strand at 4020.946 kb on + strand at 4020.953 kb on - strand at 4020.954 kb on - strand at 4020.954 kb on - strand at 4020.963 kb on + strand at 4021.112 kb on + strand, within CCNA_03857 at 4021.161 kb on + strand, within CCNA_03857 at 4021.202 kb on + strand, within CCNA_03857 at 4021.296 kb on + strand, within CCNA_03857 at 4021.296 kb on + strand, within CCNA_03857 at 4021.304 kb on - strand, within CCNA_03857 at 4021.399 kb on - strand, within CCNA_03857 at 4021.413 kb on - strand, within CCNA_03857 at 4021.452 kb on + strand, within CCNA_03857 at 4021.502 kb on - strand, within CCNA_03857 at 4021.583 kb on + strand at 4021.591 kb on - strand at 4021.591 kb on - strand at 4021.616 kb on + strand at 4021.633 kb on - strand at 4021.650 kb on - strand at 4021.729 kb on + strand at 4021.749 kb on - strand at 4021.751 kb on + strand at 4021.782 kb on - strand, within CCNA_03858 at 4021.910 kb on + strand, within CCNA_03858 at 4021.910 kb on + strand, within CCNA_03858 at 4021.979 kb on + strand, within CCNA_03858 at 4021.987 kb on - strand, within CCNA_03858 at 4021.987 kb on - strand, within CCNA_03858 at 4021.987 kb on - strand, within CCNA_03858 at 4021.987 kb on - strand, within CCNA_03858 at 4022.000 kb on - strand, within CCNA_03858 at 4022.002 kb on - strand, within CCNA_03858 at 4022.143 kb on - strand, within CCNA_03858 at 4022.158 kb on - strand at 4022.158 kb on - strand at 4022.158 kb on - strand at 4022.158 kb on - strand at 4022.169 kb on + strand at 4022.177 kb on - strand at 4022.198 kb on + strand at 4022.264 kb on + strand at 4022.285 kb on - strand at 4022.404 kb on - strand, within CCNA_03859 at 4022.404 kb on - strand, within CCNA_03859 at 4022.420 kb on - strand, within CCNA_03859 at 4022.432 kb on + strand, within CCNA_03859 at 4022.432 kb on + strand, within CCNA_03859 at 4022.440 kb on - strand, within CCNA_03859 at 4022.449 kb on + strand, within CCNA_03859 at 4022.560 kb on - strand, within CCNA_03859 at 4022.560 kb on - strand, within CCNA_03859 at 4022.576 kb on - strand, within CCNA_03859 at 4022.799 kb on + strand, within CCNA_03859 at 4022.936 kb on - strand at 4022.954 kb on - strand at 4022.957 kb on - strand at 4022.970 kb on + strand at 4022.987 kb on - strand at 4022.992 kb on - strand at 4022.992 kb on - strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.031 kb on + strand at 4023.181 kb on - strand, within CCNA_03860 at 4023.181 kb on - strand, within CCNA_03860 at 4023.203 kb on + strand, within CCNA_03860 at 4023.203 kb on + strand, within CCNA_03860
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 4,020,757 - CCNA_03856 0.82 +0.2 4,020,767 - CCNA_03856 0.83 -1.0 4,020,770 + CCNA_03856 0.84 +0.0 4,020,857 + +0.1 4,020,878 + +0.1 4,020,890 + -1.0 4,020,895 + -1.0 4,020,946 + +0.6 4,020,946 + -0.2 4,020,946 + +1.1 4,020,953 - +0.1 4,020,954 - -0.0 4,020,954 - +0.1 4,020,963 + +0.0 4,021,112 + CCNA_03857 0.24 -0.0 4,021,161 + CCNA_03857 0.33 -0.8 4,021,202 + CCNA_03857 0.39 +0.2 4,021,296 + CCNA_03857 0.55 -1.0 4,021,296 + CCNA_03857 0.55 +0.2 4,021,304 - CCNA_03857 0.56 -0.7 4,021,399 - CCNA_03857 0.72 +0.4 4,021,413 - CCNA_03857 0.74 +0.4 4,021,452 + CCNA_03857 0.81 +0.4 4,021,502 - CCNA_03857 0.89 -0.2 4,021,583 + -2.5 4,021,591 - -0.4 4,021,591 - +0.2 4,021,616 + -0.9 4,021,633 - -0.3 4,021,650 - +0.7 4,021,729 + +0.4 4,021,749 - -0.2 4,021,751 + -0.2 4,021,782 - CCNA_03858 0.14 +0.4 4,021,910 + CCNA_03858 0.40 +0.4 4,021,910 + CCNA_03858 0.40 +0.1 4,021,979 + CCNA_03858 0.54 +0.7 4,021,987 - CCNA_03858 0.56 +1.2 4,021,987 - CCNA_03858 0.56 -0.6 4,021,987 - CCNA_03858 0.56 +0.0 4,021,987 - CCNA_03858 0.56 +0.5 4,022,000 - CCNA_03858 0.58 -1.1 4,022,002 - CCNA_03858 0.59 -0.8 4,022,143 - CCNA_03858 0.87 +0.5 4,022,158 - -1.4 4,022,158 - +1.1 4,022,158 - +0.4 4,022,158 - +0.2 4,022,169 + -0.0 4,022,177 - -2.2 4,022,198 + +0.0 4,022,264 + -0.7 4,022,285 - +0.2 4,022,404 - CCNA_03859 0.20 -0.8 4,022,404 - CCNA_03859 0.20 -1.2 4,022,420 - CCNA_03859 0.22 -1.4 4,022,432 + CCNA_03859 0.24 -1.3 4,022,432 + CCNA_03859 0.24 +0.5 4,022,440 - CCNA_03859 0.25 -1.0 4,022,449 + CCNA_03859 0.27 -1.0 4,022,560 - CCNA_03859 0.43 -0.5 4,022,560 - CCNA_03859 0.43 +0.5 4,022,576 - CCNA_03859 0.45 -0.0 4,022,799 + CCNA_03859 0.78 -0.0 4,022,936 - -0.3 4,022,954 - +0.1 4,022,957 - +1.7 4,022,970 + -1.4 4,022,987 - +2.1 4,022,992 - +0.1 4,022,992 - -0.8 4,023,001 + -2.0 4,023,001 + -0.7 4,023,001 + -0.7 4,023,001 + -0.1 4,023,001 + -0.3 4,023,001 + +0.1 4,023,001 + -0.4 4,023,001 + +0.3 4,023,009 - -0.4 4,023,009 - +0.6 4,023,009 - +0.1 4,023,009 - -0.6 4,023,009 - -0.3 4,023,009 - +0.8 4,023,031 + +1.4 4,023,181 - CCNA_03860 0.30 +0.0 4,023,181 - CCNA_03860 0.30 -0.6 4,023,203 + CCNA_03860 0.35 -0.1 4,023,203 + CCNA_03860 0.35 -0.8
Or see this region's nucleotide sequence