Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03841 and CCNA_03842 are separated by 54 nucleotides CCNA_03842 and CCNA_03843 are separated by 5 nucleotides CCNA_03843 and CCNA_03844 overlap by 1 nucleotides
CCNA_03841: CCNA_03841 - alpha/beta hydrolase family protein, at 4,007,847 to 4,008,806
_03841
CCNA_03842: CCNA_03842 - molybdopterin biosynthesis protein MoeB, at 4,008,861 to 4,009,598
_03842
CCNA_03843: CCNA_03843 - ATP-dependent endopeptidase hsl proteolytic subunit HslV, at 4,009,604 to 4,010,206
_03843
CCNA_03844: CCNA_03844 - ATP-dependent endopeptidase hsl ATP-binding subunit HslU, at 4,010,206 to 4,011,498
_03844
Position (kb)
4009
4010
4011 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4008.620 kb on + strand, within CCNA_03841 at 4008.620 kb on + strand, within CCNA_03841 at 4008.620 kb on + strand, within CCNA_03841 at 4008.620 kb on + strand, within CCNA_03841 at 4008.620 kb on + strand, within CCNA_03841 at 4008.620 kb on + strand, within CCNA_03841 at 4008.620 kb on + strand, within CCNA_03841 at 4008.628 kb on - strand, within CCNA_03841 at 4008.628 kb on - strand, within CCNA_03841 at 4008.628 kb on - strand, within CCNA_03841 at 4008.628 kb on - strand, within CCNA_03841 at 4008.634 kb on - strand, within CCNA_03841 at 4008.649 kb on - strand, within CCNA_03841 at 4008.657 kb on - strand, within CCNA_03841 at 4008.672 kb on + strand, within CCNA_03841 at 4008.709 kb on - strand, within CCNA_03841 at 4008.716 kb on + strand at 4008.716 kb on + strand at 4008.726 kb on + strand at 4008.731 kb on + strand at 4008.734 kb on - strand at 4008.745 kb on + strand at 4008.753 kb on - strand at 4008.767 kb on + strand at 4008.776 kb on - strand at 4008.793 kb on - strand at 4008.844 kb on + strand at 4008.868 kb on - strand at 4009.602 kb on + strand at 4009.621 kb on - strand at 4009.637 kb on + strand at 4009.640 kb on + strand at 4009.735 kb on + strand, within CCNA_03843 at 4009.735 kb on + strand, within CCNA_03843 at 4009.743 kb on - strand, within CCNA_03843 at 4009.778 kb on + strand, within CCNA_03843 at 4009.778 kb on - strand, within CCNA_03843 at 4009.778 kb on - strand, within CCNA_03843 at 4009.787 kb on - strand, within CCNA_03843 at 4009.805 kb on + strand, within CCNA_03843 at 4009.819 kb on - strand, within CCNA_03843 at 4009.819 kb on - strand, within CCNA_03843 at 4009.836 kb on + strand, within CCNA_03843 at 4009.836 kb on + strand, within CCNA_03843 at 4009.836 kb on + strand, within CCNA_03843 at 4009.836 kb on + strand, within CCNA_03843 at 4009.836 kb on + strand, within CCNA_03843 at 4009.844 kb on - strand, within CCNA_03843 at 4009.844 kb on - strand, within CCNA_03843 at 4009.844 kb on - strand, within CCNA_03843 at 4009.855 kb on + strand, within CCNA_03843 at 4009.861 kb on + strand, within CCNA_03843 at 4009.863 kb on - strand, within CCNA_03843 at 4009.863 kb on - strand, within CCNA_03843 at 4009.878 kb on + strand, within CCNA_03843 at 4009.878 kb on + strand, within CCNA_03843 at 4009.881 kb on - strand, within CCNA_03843 at 4009.897 kb on + strand, within CCNA_03843 at 4009.918 kb on + strand, within CCNA_03843 at 4009.918 kb on + strand, within CCNA_03843 at 4010.066 kb on + strand, within CCNA_03843 at 4010.079 kb on + strand, within CCNA_03843 at 4010.113 kb on + strand, within CCNA_03843 at 4010.120 kb on + strand, within CCNA_03843 at 4010.121 kb on - strand, within CCNA_03843 at 4010.156 kb on + strand at 4010.164 kb on - strand at 4010.168 kb on + strand at 4010.198 kb on + strand at 4010.208 kb on - strand at 4010.301 kb on - strand at 4010.301 kb on - strand at 4010.322 kb on + strand at 4010.327 kb on + strand at 4010.335 kb on - strand at 4010.345 kb on + strand, within CCNA_03844 at 4010.351 kb on + strand, within CCNA_03844 at 4010.351 kb on + strand, within CCNA_03844 at 4010.423 kb on - strand, within CCNA_03844 at 4010.460 kb on + strand, within CCNA_03844 at 4010.497 kb on - strand, within CCNA_03844 at 4010.529 kb on + strand, within CCNA_03844 at 4010.560 kb on - strand, within CCNA_03844 at 4010.565 kb on + strand, within CCNA_03844 at 4010.565 kb on + strand, within CCNA_03844 at 4010.565 kb on + strand, within CCNA_03844 at 4010.571 kb on + strand, within CCNA_03844 at 4010.571 kb on + strand, within CCNA_03844 at 4010.573 kb on - strand, within CCNA_03844 at 4010.573 kb on - strand, within CCNA_03844 at 4010.573 kb on - strand, within CCNA_03844 at 4010.573 kb on - strand, within CCNA_03844 at 4010.580 kb on - strand, within CCNA_03844 at 4010.582 kb on + strand, within CCNA_03844 at 4010.582 kb on + strand, within CCNA_03844 at 4010.587 kb on + strand, within CCNA_03844 at 4010.597 kb on + strand, within CCNA_03844 at 4010.615 kb on + strand, within CCNA_03844 at 4010.615 kb on + strand, within CCNA_03844 at 4010.624 kb on + strand, within CCNA_03844 at 4010.752 kb on + strand, within CCNA_03844 at 4010.762 kb on - strand, within CCNA_03844 at 4010.796 kb on + strand, within CCNA_03844 at 4010.821 kb on - strand, within CCNA_03844 at 4010.826 kb on - strand, within CCNA_03844 at 4010.826 kb on - strand, within CCNA_03844 at 4010.878 kb on + strand, within CCNA_03844 at 4010.885 kb on + strand, within CCNA_03844 at 4010.894 kb on + strand, within CCNA_03844 at 4011.042 kb on - strand, within CCNA_03844 at 4011.045 kb on + strand, within CCNA_03844 at 4011.054 kb on + strand, within CCNA_03844 at 4011.054 kb on + strand, within CCNA_03844 at 4011.062 kb on - strand, within CCNA_03844 at 4011.062 kb on - strand, within CCNA_03844 at 4011.062 kb on - strand, within CCNA_03844 at 4011.065 kb on + strand, within CCNA_03844 at 4011.067 kb on - strand, within CCNA_03844 at 4011.130 kb on + strand, within CCNA_03844 at 4011.130 kb on - strand, within CCNA_03844 at 4011.157 kb on + strand, within CCNA_03844 at 4011.157 kb on + strand, within CCNA_03844 at 4011.157 kb on + strand, within CCNA_03844 at 4011.159 kb on + strand, within CCNA_03844 at 4011.159 kb on + strand, within CCNA_03844 at 4011.165 kb on - strand, within CCNA_03844 at 4011.165 kb on - strand, within CCNA_03844 at 4011.167 kb on - strand, within CCNA_03844
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 4,008,620 + CCNA_03841 0.81 +0.5 4,008,620 + CCNA_03841 0.81 -0.1 4,008,620 + CCNA_03841 0.81 -0.5 4,008,620 + CCNA_03841 0.81 +0.4 4,008,620 + CCNA_03841 0.81 +0.1 4,008,620 + CCNA_03841 0.81 -1.0 4,008,620 + CCNA_03841 0.81 -1.9 4,008,628 - CCNA_03841 0.81 -0.4 4,008,628 - CCNA_03841 0.81 +0.3 4,008,628 - CCNA_03841 0.81 -0.9 4,008,628 - CCNA_03841 0.81 +0.1 4,008,634 - CCNA_03841 0.82 +0.2 4,008,649 - CCNA_03841 0.84 +1.2 4,008,657 - CCNA_03841 0.84 -0.2 4,008,672 + CCNA_03841 0.86 -0.6 4,008,709 - CCNA_03841 0.90 -0.6 4,008,716 + +0.5 4,008,716 + -0.0 4,008,726 + +0.3 4,008,731 + +0.1 4,008,734 - -0.0 4,008,745 + -1.6 4,008,753 - +0.8 4,008,767 + +0.5 4,008,776 - -0.2 4,008,793 - +0.4 4,008,844 + +1.0 4,008,868 - -0.1 4,009,602 + +0.4 4,009,621 - +0.2 4,009,637 + -0.2 4,009,640 + -0.6 4,009,735 + CCNA_03843 0.22 +0.2 4,009,735 + CCNA_03843 0.22 -0.4 4,009,743 - CCNA_03843 0.23 -0.6 4,009,778 + CCNA_03843 0.29 -0.2 4,009,778 - CCNA_03843 0.29 -1.1 4,009,778 - CCNA_03843 0.29 -0.4 4,009,787 - CCNA_03843 0.30 -0.6 4,009,805 + CCNA_03843 0.33 -0.6 4,009,819 - CCNA_03843 0.36 +1.5 4,009,819 - CCNA_03843 0.36 -0.5 4,009,836 + CCNA_03843 0.38 -1.1 4,009,836 + CCNA_03843 0.38 -1.1 4,009,836 + CCNA_03843 0.38 -0.1 4,009,836 + CCNA_03843 0.38 +0.3 4,009,836 + CCNA_03843 0.38 +0.1 4,009,844 - CCNA_03843 0.40 +0.1 4,009,844 - CCNA_03843 0.40 +0.1 4,009,844 - CCNA_03843 0.40 +0.0 4,009,855 + CCNA_03843 0.42 -1.3 4,009,861 + CCNA_03843 0.43 +0.6 4,009,863 - CCNA_03843 0.43 -0.6 4,009,863 - CCNA_03843 0.43 -0.4 4,009,878 + CCNA_03843 0.45 -0.4 4,009,878 + CCNA_03843 0.45 -0.0 4,009,881 - CCNA_03843 0.46 -1.0 4,009,897 + CCNA_03843 0.49 +0.4 4,009,918 + CCNA_03843 0.52 +0.5 4,009,918 + CCNA_03843 0.52 +0.0 4,010,066 + CCNA_03843 0.77 +0.8 4,010,079 + CCNA_03843 0.79 +0.1 4,010,113 + CCNA_03843 0.84 -0.0 4,010,120 + CCNA_03843 0.86 +0.2 4,010,121 - CCNA_03843 0.86 -2.9 4,010,156 + +0.2 4,010,164 - -1.2 4,010,168 + +0.6 4,010,198 + -0.0 4,010,208 - -1.0 4,010,301 - +1.1 4,010,301 - +0.0 4,010,322 + +0.6 4,010,327 + -0.1 4,010,335 - +0.8 4,010,345 + CCNA_03844 0.11 -0.0 4,010,351 + CCNA_03844 0.11 -0.1 4,010,351 + CCNA_03844 0.11 +0.3 4,010,423 - CCNA_03844 0.17 -0.5 4,010,460 + CCNA_03844 0.20 -0.0 4,010,497 - CCNA_03844 0.23 -0.3 4,010,529 + CCNA_03844 0.25 -0.6 4,010,560 - CCNA_03844 0.27 -0.4 4,010,565 + CCNA_03844 0.28 -0.1 4,010,565 + CCNA_03844 0.28 +0.6 4,010,565 + CCNA_03844 0.28 +0.6 4,010,571 + CCNA_03844 0.28 +1.0 4,010,571 + CCNA_03844 0.28 +0.6 4,010,573 - CCNA_03844 0.28 -0.0 4,010,573 - CCNA_03844 0.28 +1.2 4,010,573 - CCNA_03844 0.28 -1.0 4,010,573 - CCNA_03844 0.28 +0.2 4,010,580 - CCNA_03844 0.29 +0.1 4,010,582 + CCNA_03844 0.29 -0.1 4,010,582 + CCNA_03844 0.29 -0.1 4,010,587 + CCNA_03844 0.29 -0.0 4,010,597 + CCNA_03844 0.30 +0.2 4,010,615 + CCNA_03844 0.32 +0.3 4,010,615 + CCNA_03844 0.32 -0.6 4,010,624 + CCNA_03844 0.32 +0.1 4,010,752 + CCNA_03844 0.42 -0.8 4,010,762 - CCNA_03844 0.43 -1.0 4,010,796 + CCNA_03844 0.46 -0.2 4,010,821 - CCNA_03844 0.48 -0.7 4,010,826 - CCNA_03844 0.48 +0.4 4,010,826 - CCNA_03844 0.48 +0.7 4,010,878 + CCNA_03844 0.52 -1.3 4,010,885 + CCNA_03844 0.53 +0.2 4,010,894 + CCNA_03844 0.53 +0.3 4,011,042 - CCNA_03844 0.65 +0.2 4,011,045 + CCNA_03844 0.65 +1.1 4,011,054 + CCNA_03844 0.66 +1.3 4,011,054 + CCNA_03844 0.66 +0.4 4,011,062 - CCNA_03844 0.66 +0.7 4,011,062 - CCNA_03844 0.66 -0.3 4,011,062 - CCNA_03844 0.66 -0.2 4,011,065 + CCNA_03844 0.66 -1.7 4,011,067 - CCNA_03844 0.67 -0.1 4,011,130 + CCNA_03844 0.71 +0.1 4,011,130 - CCNA_03844 0.71 -1.2 4,011,157 + CCNA_03844 0.74 +0.3 4,011,157 + CCNA_03844 0.74 +0.0 4,011,157 + CCNA_03844 0.74 -0.2 4,011,159 + CCNA_03844 0.74 -0.2 4,011,159 + CCNA_03844 0.74 +0.8 4,011,165 - CCNA_03844 0.74 -1.6 4,011,165 - CCNA_03844 0.74 +1.1 4,011,167 - CCNA_03844 0.74 +0.3
Or see this region's nucleotide sequence