Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03832

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03831 and CCNA_03832 are separated by 16 nucleotidesCCNA_03832 and CCNA_03833 are separated by 17 nucleotidesCCNA_03833 and CCNA_03834 are separated by 65 nucleotides CCNA_03831: CCNA_03831 - major facilitator superfamily transporter, at 3,995,750 to 3,997,351 _03831 CCNA_03832: CCNA_03832 - TetR-family transcriptional regulator, at 3,997,368 to 3,997,976 _03832 CCNA_03833: CCNA_03833 - enoyl-(acyl-carrier protein) reductase FabI, at 3,997,994 to 3,998,809 _03833 CCNA_03834: CCNA_03834 - tetratricopeptide repeat family protein, at 3,998,875 to 4,000,665 _03834 Position (kb) 3997 3998Strain fitness (log2 ratio) -2 -1 0 1at 3996.399 kb on - strand, within CCNA_03831at 3996.467 kb on + strand, within CCNA_03831at 3996.468 kb on + strand, within CCNA_03831at 3996.473 kb on + strand, within CCNA_03831at 3996.476 kb on - strand, within CCNA_03831at 3996.559 kb on + strand, within CCNA_03831at 3996.620 kb on + strand, within CCNA_03831at 3996.628 kb on - strand, within CCNA_03831at 3996.642 kb on + strand, within CCNA_03831at 3996.645 kb on - strand, within CCNA_03831at 3996.645 kb on - strand, within CCNA_03831at 3996.679 kb on + strand, within CCNA_03831at 3996.718 kb on + strand, within CCNA_03831at 3996.726 kb on - strand, within CCNA_03831at 3996.729 kb on + strand, within CCNA_03831at 3996.730 kb on + strand, within CCNA_03831at 3996.842 kb on - strand, within CCNA_03831at 3996.844 kb on + strand, within CCNA_03831at 3996.851 kb on + strand, within CCNA_03831at 3996.868 kb on + strand, within CCNA_03831at 3996.868 kb on + strand, within CCNA_03831at 3996.884 kb on - strand, within CCNA_03831at 3996.901 kb on + strand, within CCNA_03831at 3996.987 kb on - strand, within CCNA_03831at 3996.990 kb on + strand, within CCNA_03831at 3997.064 kb on - strand, within CCNA_03831at 3997.103 kb on - strand, within CCNA_03831at 3997.106 kb on + strand, within CCNA_03831at 3997.106 kb on + strand, within CCNA_03831at 3997.114 kb on - strand, within CCNA_03831at 3997.251 kb on + strandat 3997.259 kb on - strandat 3997.312 kb on + strandat 3997.312 kb on + strandat 3997.320 kb on - strandat 3997.360 kb on - strandat 3997.378 kb on + strandat 3997.386 kb on - strandat 3997.386 kb on - strandat 3997.416 kb on - strandat 3997.483 kb on + strand, within CCNA_03832at 3997.492 kb on + strand, within CCNA_03832at 3997.500 kb on - strand, within CCNA_03832at 3997.514 kb on - strand, within CCNA_03832at 3997.538 kb on + strand, within CCNA_03832at 3997.538 kb on + strand, within CCNA_03832at 3997.629 kb on + strand, within CCNA_03832at 3997.797 kb on + strand, within CCNA_03832at 3997.805 kb on - strand, within CCNA_03832at 3997.884 kb on + strand, within CCNA_03832at 3997.892 kb on - strand, within CCNA_03832at 3997.941 kb on - strandat 3997.958 kb on - strandat 3997.961 kb on + strandat 3997.961 kb on + strandat 3997.976 kb on + strandat 3997.986 kb on + strandat 3997.991 kb on + strandat 3997.992 kb on + strandat 3998.000 kb on - strandat 3998.000 kb on - strandat 3998.831 kb on + strandat 3998.873 kb on + strandat 3998.881 kb on - strandat 3998.901 kb on - strandat 3998.902 kb on - strandat 3998.948 kb on - strandat 3998.969 kb on - strandat 3998.969 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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3,996,399 - CCNA_03831 0.41 -0.4
3,996,467 + CCNA_03831 0.45 -0.0
3,996,468 + CCNA_03831 0.45 -0.3
3,996,473 + CCNA_03831 0.45 +1.1
3,996,476 - CCNA_03831 0.45 +1.0
3,996,559 + CCNA_03831 0.50 -1.8
3,996,620 + CCNA_03831 0.54 -0.2
3,996,628 - CCNA_03831 0.55 -2.6
3,996,642 + CCNA_03831 0.56 +0.0
3,996,645 - CCNA_03831 0.56 -0.9
3,996,645 - CCNA_03831 0.56 -1.9
3,996,679 + CCNA_03831 0.58 +0.4
3,996,718 + CCNA_03831 0.60 +0.6
3,996,726 - CCNA_03831 0.61 -0.1
3,996,729 + CCNA_03831 0.61 -0.3
3,996,730 + CCNA_03831 0.61 +0.2
3,996,842 - CCNA_03831 0.68 +0.4
3,996,844 + CCNA_03831 0.68 -0.4
3,996,851 + CCNA_03831 0.69 +0.7
3,996,868 + CCNA_03831 0.70 +0.1
3,996,868 + CCNA_03831 0.70 +0.3
3,996,884 - CCNA_03831 0.71 -1.2
3,996,901 + CCNA_03831 0.72 -0.2
3,996,987 - CCNA_03831 0.77 -0.3
3,996,990 + CCNA_03831 0.77 +0.3
3,997,064 - CCNA_03831 0.82 +0.2
3,997,103 - CCNA_03831 0.84 -0.1
3,997,106 + CCNA_03831 0.85 +0.8
3,997,106 + CCNA_03831 0.85 -0.4
3,997,114 - CCNA_03831 0.85 +0.5
3,997,251 + -0.7
3,997,259 - +0.2
3,997,312 + +0.1
3,997,312 + -0.6
3,997,320 - -0.6
3,997,360 - -1.0
3,997,378 + -0.5
3,997,386 - +0.1
3,997,386 - -0.3
3,997,416 - -0.5
3,997,483 + CCNA_03832 0.19 +1.1
3,997,492 + CCNA_03832 0.20 -0.4
3,997,500 - CCNA_03832 0.22 +0.2
3,997,514 - CCNA_03832 0.24 -0.7
3,997,538 + CCNA_03832 0.28 -0.2
3,997,538 + CCNA_03832 0.28 +0.4
3,997,629 + CCNA_03832 0.43 +0.0
3,997,797 + CCNA_03832 0.70 +0.2
3,997,805 - CCNA_03832 0.72 -0.8
3,997,884 + CCNA_03832 0.85 -0.2
3,997,892 - CCNA_03832 0.86 +0.1
3,997,941 - -0.4
3,997,958 - -0.5
3,997,961 + +0.0
3,997,961 + +0.4
3,997,976 + -0.1
3,997,986 + +0.2
3,997,991 + -0.1
3,997,992 + -0.1
3,998,000 - -0.3
3,998,000 - -1.0
3,998,831 + +0.2
3,998,873 + -0.6
3,998,881 - -0.9
3,998,901 - -0.1
3,998,902 - -0.8
3,998,948 - -0.0
3,998,969 - +0.0
3,998,969 - -0.6

Or see this region's nucleotide sequence