Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03808 and CCNA_03809 are separated by 1 nucleotides CCNA_03809 and CCNA_03810 overlap by 4 nucleotides CCNA_03810 and CCNA_03811 are separated by 6 nucleotides
CCNA_03808: CCNA_03808 - organic solvent resistance transport system Ttg2C protein, at 3,972,688 to 3,973,200
_03808
CCNA_03809: CCNA_03809 - organic solvent resistance transport system permease, at 3,973,202 to 3,974,011
_03809
CCNA_03810: CCNA_03810 - organic solvent resistance transport system ATP-binding protein, at 3,974,008 to 3,974,778
_03810
CCNA_03811: CCNA_03811 - LysR-family transcriptional regulator, at 3,974,785 to 3,975,687
_03811
Position (kb)
3974
3975 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3973.010 kb on - strand, within CCNA_03808 at 3973.015 kb on + strand, within CCNA_03808 at 3973.049 kb on + strand, within CCNA_03808 at 3973.049 kb on + strand, within CCNA_03808 at 3973.049 kb on + strand, within CCNA_03808 at 3973.049 kb on + strand, within CCNA_03808 at 3973.057 kb on - strand, within CCNA_03808 at 3973.057 kb on - strand, within CCNA_03808 at 3973.102 kb on + strand, within CCNA_03808 at 3973.172 kb on - strand at 3973.265 kb on + strand at 3973.265 kb on + strand at 3973.273 kb on - strand at 3973.298 kb on - strand, within CCNA_03809 at 3973.312 kb on + strand, within CCNA_03809 at 3973.317 kb on + strand, within CCNA_03809 at 3973.339 kb on + strand, within CCNA_03809 at 3973.347 kb on - strand, within CCNA_03809 at 3973.447 kb on - strand, within CCNA_03809 at 3973.463 kb on + strand, within CCNA_03809 at 3973.465 kb on - strand, within CCNA_03809 at 3973.468 kb on + strand, within CCNA_03809 at 3973.468 kb on + strand, within CCNA_03809 at 3973.468 kb on + strand, within CCNA_03809 at 3973.476 kb on - strand, within CCNA_03809 at 3973.483 kb on + strand, within CCNA_03809 at 3973.483 kb on + strand, within CCNA_03809 at 3973.585 kb on + strand, within CCNA_03809 at 3973.612 kb on + strand, within CCNA_03809 at 3973.631 kb on + strand, within CCNA_03809 at 3973.699 kb on + strand, within CCNA_03809 at 3973.707 kb on - strand, within CCNA_03809 at 3973.718 kb on + strand, within CCNA_03809 at 3973.757 kb on + strand, within CCNA_03809 at 3973.842 kb on - strand, within CCNA_03809 at 3973.842 kb on - strand, within CCNA_03809 at 3973.842 kb on - strand, within CCNA_03809 at 3973.842 kb on - strand, within CCNA_03809 at 3973.865 kb on + strand, within CCNA_03809 at 3973.933 kb on - strand at 3973.963 kb on - strand at 3973.963 kb on - strand at 3973.968 kb on + strand at 3974.000 kb on + strand at 3974.071 kb on + strand at 3974.089 kb on - strand, within CCNA_03810 at 3974.115 kb on + strand, within CCNA_03810 at 3974.139 kb on + strand, within CCNA_03810 at 3974.139 kb on + strand, within CCNA_03810 at 3974.147 kb on - strand, within CCNA_03810 at 3974.147 kb on - strand, within CCNA_03810 at 3974.162 kb on - strand, within CCNA_03810 at 3974.178 kb on - strand, within CCNA_03810 at 3974.218 kb on - strand, within CCNA_03810 at 3974.237 kb on - strand, within CCNA_03810 at 3974.237 kb on - strand, within CCNA_03810 at 3974.237 kb on - strand, within CCNA_03810 at 3974.237 kb on - strand, within CCNA_03810 at 3974.261 kb on - strand, within CCNA_03810 at 3974.282 kb on + strand, within CCNA_03810 at 3974.282 kb on - strand, within CCNA_03810 at 3974.282 kb on - strand, within CCNA_03810 at 3974.282 kb on - strand, within CCNA_03810 at 3974.334 kb on + strand, within CCNA_03810 at 3974.350 kb on + strand, within CCNA_03810 at 3974.452 kb on + strand, within CCNA_03810 at 3974.467 kb on + strand, within CCNA_03810 at 3974.467 kb on + strand, within CCNA_03810 at 3974.467 kb on + strand, within CCNA_03810 at 3974.467 kb on + strand, within CCNA_03810 at 3974.472 kb on + strand, within CCNA_03810 at 3974.475 kb on - strand, within CCNA_03810 at 3974.475 kb on - strand, within CCNA_03810 at 3974.475 kb on - strand, within CCNA_03810 at 3974.475 kb on - strand, within CCNA_03810 at 3974.490 kb on - strand, within CCNA_03810 at 3974.517 kb on + strand, within CCNA_03810 at 3974.522 kb on + strand, within CCNA_03810 at 3974.612 kb on + strand, within CCNA_03810 at 3974.612 kb on + strand, within CCNA_03810 at 3974.612 kb on + strand, within CCNA_03810 at 3974.612 kb on + strand, within CCNA_03810 at 3974.620 kb on - strand, within CCNA_03810 at 3974.620 kb on - strand, within CCNA_03810 at 3974.625 kb on - strand, within CCNA_03810 at 3974.629 kb on + strand, within CCNA_03810 at 3974.629 kb on + strand, within CCNA_03810 at 3974.637 kb on - strand, within CCNA_03810 at 3974.661 kb on + strand, within CCNA_03810 at 3974.711 kb on + strand at 3974.717 kb on + strand at 3974.717 kb on + strand at 3974.755 kb on + strand at 3974.756 kb on - strand at 3974.775 kb on - strand at 3974.812 kb on - strand at 3974.812 kb on - strand at 3975.684 kb on + strand at 3975.684 kb on - strand at 3975.690 kb on - strand at 3975.752 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,973,010 - CCNA_03808 0.63 -0.1 3,973,015 + CCNA_03808 0.64 +1.3 3,973,049 + CCNA_03808 0.70 -0.3 3,973,049 + CCNA_03808 0.70 +0.9 3,973,049 + CCNA_03808 0.70 +0.4 3,973,049 + CCNA_03808 0.70 -0.4 3,973,057 - CCNA_03808 0.72 -0.0 3,973,057 - CCNA_03808 0.72 +0.2 3,973,102 + CCNA_03808 0.81 -0.2 3,973,172 - -0.6 3,973,265 + -2.3 3,973,265 + -0.1 3,973,273 - +0.1 3,973,298 - CCNA_03809 0.12 -0.2 3,973,312 + CCNA_03809 0.14 +1.5 3,973,317 + CCNA_03809 0.14 +0.4 3,973,339 + CCNA_03809 0.17 +0.4 3,973,347 - CCNA_03809 0.18 -0.8 3,973,447 - CCNA_03809 0.30 -0.2 3,973,463 + CCNA_03809 0.32 +0.1 3,973,465 - CCNA_03809 0.32 +0.1 3,973,468 + CCNA_03809 0.33 +0.4 3,973,468 + CCNA_03809 0.33 -0.7 3,973,468 + CCNA_03809 0.33 +0.5 3,973,476 - CCNA_03809 0.34 -0.1 3,973,483 + CCNA_03809 0.35 +0.5 3,973,483 + CCNA_03809 0.35 -0.4 3,973,585 + CCNA_03809 0.47 -0.2 3,973,612 + CCNA_03809 0.51 -0.7 3,973,631 + CCNA_03809 0.53 +0.3 3,973,699 + CCNA_03809 0.61 +0.2 3,973,707 - CCNA_03809 0.62 -0.1 3,973,718 + CCNA_03809 0.64 -0.1 3,973,757 + CCNA_03809 0.69 -0.7 3,973,842 - CCNA_03809 0.79 -0.8 3,973,842 - CCNA_03809 0.79 -0.9 3,973,842 - CCNA_03809 0.79 +0.0 3,973,842 - CCNA_03809 0.79 +0.1 3,973,865 + CCNA_03809 0.82 +0.0 3,973,933 - +0.4 3,973,963 - +0.8 3,973,963 - +0.2 3,973,968 + -0.1 3,974,000 + +0.2 3,974,071 + -0.1 3,974,089 - CCNA_03810 0.11 -0.7 3,974,115 + CCNA_03810 0.14 +0.1 3,974,139 + CCNA_03810 0.17 +0.2 3,974,139 + CCNA_03810 0.17 +0.2 3,974,147 - CCNA_03810 0.18 -0.5 3,974,147 - CCNA_03810 0.18 +2.0 3,974,162 - CCNA_03810 0.20 -1.1 3,974,178 - CCNA_03810 0.22 +0.4 3,974,218 - CCNA_03810 0.27 -0.3 3,974,237 - CCNA_03810 0.30 -0.4 3,974,237 - CCNA_03810 0.30 -0.1 3,974,237 - CCNA_03810 0.30 -0.9 3,974,237 - CCNA_03810 0.30 -1.0 3,974,261 - CCNA_03810 0.33 -0.1 3,974,282 + CCNA_03810 0.36 -0.7 3,974,282 - CCNA_03810 0.36 -0.0 3,974,282 - CCNA_03810 0.36 +0.4 3,974,282 - CCNA_03810 0.36 +0.2 3,974,334 + CCNA_03810 0.42 -1.0 3,974,350 + CCNA_03810 0.44 +0.9 3,974,452 + CCNA_03810 0.58 +0.9 3,974,467 + CCNA_03810 0.60 -0.0 3,974,467 + CCNA_03810 0.60 -0.7 3,974,467 + CCNA_03810 0.60 -0.3 3,974,467 + CCNA_03810 0.60 +0.6 3,974,472 + CCNA_03810 0.60 -1.4 3,974,475 - CCNA_03810 0.61 -0.8 3,974,475 - CCNA_03810 0.61 +0.1 3,974,475 - CCNA_03810 0.61 +0.3 3,974,475 - CCNA_03810 0.61 -1.7 3,974,490 - CCNA_03810 0.63 -0.0 3,974,517 + CCNA_03810 0.66 +0.3 3,974,522 + CCNA_03810 0.67 -0.3 3,974,612 + CCNA_03810 0.78 +0.4 3,974,612 + CCNA_03810 0.78 +0.3 3,974,612 + CCNA_03810 0.78 -0.1 3,974,612 + CCNA_03810 0.78 -0.4 3,974,620 - CCNA_03810 0.79 +1.3 3,974,620 - CCNA_03810 0.79 -1.1 3,974,625 - CCNA_03810 0.80 +0.3 3,974,629 + CCNA_03810 0.81 -0.4 3,974,629 + CCNA_03810 0.81 +0.6 3,974,637 - CCNA_03810 0.82 -0.0 3,974,661 + CCNA_03810 0.85 -0.1 3,974,711 + -0.0 3,974,717 + +0.7 3,974,717 + -0.1 3,974,755 + -0.7 3,974,756 - +0.2 3,974,775 - -0.1 3,974,812 - -0.8 3,974,812 - -0.9 3,975,684 + -1.9 3,975,684 - +0.2 3,975,690 - +0.0 3,975,752 - +0.3
Or see this region's nucleotide sequence