Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03780 and CCNA_03781 are separated by 170 nucleotides CCNA_03781 and CCNA_03782 are separated by 183 nucleotides CCNA_03782 and CCNA_03783 overlap by 4 nucleotides
CCNA_03780: CCNA_03780 - conserved hypothetical secreted protein, at 3,946,415 to 3,947,149
_03780
CCNA_03781: CCNA_03781 - aconitate hydratase, at 3,947,320 to 3,950,007
_03781
CCNA_03782: CCNA_03782 - cytochrome c biogenesis ATP-binding export protein CcmA, at 3,950,191 to 3,950,805
_03782
CCNA_03783: CCNA_03783 - cytochrome c biogenesis ABC transporter permease component CcmB, at 3,950,802 to 3,951,467
_03783
Position (kb)
3947
3948
3949
3950
3951 Strain fitness (log2 ratio)
-2
-1
0
1 at 3946.358 kb on + strand at 3946.385 kb on - strand at 3946.426 kb on - strand at 3946.429 kb on + strand at 3947.147 kb on - strand at 3947.156 kb on + strand at 3947.194 kb on + strand at 3947.202 kb on - strand at 3947.207 kb on - strand at 3947.326 kb on - strand at 3947.327 kb on + strand at 3947.327 kb on + strand at 3947.356 kb on - strand at 3950.024 kb on - strand at 3950.034 kb on - strand at 3950.191 kb on - strand at 3950.322 kb on - strand, within CCNA_03782 at 3950.477 kb on + strand, within CCNA_03782 at 3950.482 kb on - strand, within CCNA_03782 at 3950.500 kb on + strand, within CCNA_03782 at 3950.609 kb on + strand, within CCNA_03782 at 3950.614 kb on + strand, within CCNA_03782 at 3950.622 kb on - strand, within CCNA_03782 at 3950.794 kb on - strand at 3950.806 kb on - strand at 3950.806 kb on - strand at 3950.838 kb on + strand at 3950.851 kb on - strand at 3950.868 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,946,358 + -0.0 3,946,385 - +0.1 3,946,426 - +1.4 3,946,429 + +0.1 3,947,147 - +0.5 3,947,156 + +0.3 3,947,194 + +0.1 3,947,202 - -0.4 3,947,207 - -0.3 3,947,326 - +0.1 3,947,327 + +1.2 3,947,327 + -0.5 3,947,356 - -1.1 3,950,024 - +0.5 3,950,034 - -0.1 3,950,191 - -2.6 3,950,322 - CCNA_03782 0.21 +0.2 3,950,477 + CCNA_03782 0.47 -0.0 3,950,482 - CCNA_03782 0.47 +0.5 3,950,500 + CCNA_03782 0.50 +0.5 3,950,609 + CCNA_03782 0.68 -0.5 3,950,614 + CCNA_03782 0.69 -1.3 3,950,622 - CCNA_03782 0.70 +0.5 3,950,794 - +0.3 3,950,806 - -1.0 3,950,806 - +1.1 3,950,838 + -1.5 3,950,851 - +0.5 3,950,868 + -0.0
Or see this region's nucleotide sequence