Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03781

Experiment: PYE no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_03780 and CCNA_03781 are separated by 170 nucleotidesCCNA_03781 and CCNA_03782 are separated by 183 nucleotidesCCNA_03782 and CCNA_03783 overlap by 4 nucleotides CCNA_03780: CCNA_03780 - conserved hypothetical secreted protein, at 3,946,415 to 3,947,149 _03780 CCNA_03781: CCNA_03781 - aconitate hydratase, at 3,947,320 to 3,950,007 _03781 CCNA_03782: CCNA_03782 - cytochrome c biogenesis ATP-binding export protein CcmA, at 3,950,191 to 3,950,805 _03782 CCNA_03783: CCNA_03783 - cytochrome c biogenesis ABC transporter permease component CcmB, at 3,950,802 to 3,951,467 _03783 Position (kb) 3947 3948 3949 3950 3951Strain fitness (log2 ratio) -2 -1 0 1at 3946.358 kb on + strandat 3946.385 kb on - strandat 3946.426 kb on - strandat 3946.429 kb on + strandat 3947.147 kb on - strandat 3947.156 kb on + strandat 3947.194 kb on + strandat 3947.202 kb on - strandat 3947.207 kb on - strandat 3947.326 kb on - strandat 3947.327 kb on + strandat 3947.327 kb on + strandat 3947.356 kb on - strandat 3950.024 kb on - strandat 3950.034 kb on - strandat 3950.191 kb on - strandat 3950.322 kb on - strand, within CCNA_03782at 3950.477 kb on + strand, within CCNA_03782at 3950.482 kb on - strand, within CCNA_03782at 3950.500 kb on + strand, within CCNA_03782at 3950.609 kb on + strand, within CCNA_03782at 3950.614 kb on + strand, within CCNA_03782at 3950.622 kb on - strand, within CCNA_03782at 3950.794 kb on - strandat 3950.806 kb on - strandat 3950.806 kb on - strandat 3950.838 kb on + strandat 3950.851 kb on - strandat 3950.868 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
remove
3,946,358 + -0.0
3,946,385 - +0.1
3,946,426 - +1.4
3,946,429 + +0.1
3,947,147 - +0.5
3,947,156 + +0.3
3,947,194 + +0.1
3,947,202 - -0.4
3,947,207 - -0.3
3,947,326 - +0.1
3,947,327 + +1.2
3,947,327 + -0.5
3,947,356 - -1.1
3,950,024 - +0.5
3,950,034 - -0.1
3,950,191 - -2.6
3,950,322 - CCNA_03782 0.21 +0.2
3,950,477 + CCNA_03782 0.47 -0.0
3,950,482 - CCNA_03782 0.47 +0.5
3,950,500 + CCNA_03782 0.50 +0.5
3,950,609 + CCNA_03782 0.68 -0.5
3,950,614 + CCNA_03782 0.69 -1.3
3,950,622 - CCNA_03782 0.70 +0.5
3,950,794 - +0.3
3,950,806 - -1.0
3,950,806 - +1.1
3,950,838 + -1.5
3,950,851 - +0.5
3,950,868 + -0.0

Or see this region's nucleotide sequence