Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03778

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03777 and CCNA_03778 are separated by 202 nucleotidesCCNA_03778 and CCNA_03779 are separated by 84 nucleotidesCCNA_03779 and CCNA_03780 are separated by 528 nucleotides CCNA_03777: CCNA_03777 - Tas protein, at 3,943,462 to 3,944,514 _03777 CCNA_03778: CCNA_03778 - integral membrane protein, at 3,944,717 to 3,945,469 _03778 CCNA_03779: CCNA_03779 - hypothetical protein, at 3,945,554 to 3,945,886 _03779 CCNA_03780: CCNA_03780 - conserved hypothetical secreted protein, at 3,946,415 to 3,947,149 _03780 Position (kb) 3944 3945 3946Strain fitness (log2 ratio) -2 -1 0 1 2at 3943.721 kb on + strand, within CCNA_03777at 3943.721 kb on + strand, within CCNA_03777at 3943.731 kb on - strand, within CCNA_03777at 3943.747 kb on + strand, within CCNA_03777at 3943.753 kb on - strand, within CCNA_03777at 3943.760 kb on + strand, within CCNA_03777at 3943.807 kb on + strand, within CCNA_03777at 3943.822 kb on - strand, within CCNA_03777at 3943.845 kb on - strand, within CCNA_03777at 3943.883 kb on - strand, within CCNA_03777at 3943.893 kb on - strand, within CCNA_03777at 3943.949 kb on + strand, within CCNA_03777at 3943.949 kb on + strand, within CCNA_03777at 3943.979 kb on - strand, within CCNA_03777at 3944.051 kb on + strand, within CCNA_03777at 3944.058 kb on - strand, within CCNA_03777at 3944.065 kb on + strand, within CCNA_03777at 3944.094 kb on + strand, within CCNA_03777at 3944.099 kb on + strand, within CCNA_03777at 3944.107 kb on - strand, within CCNA_03777at 3944.107 kb on - strand, within CCNA_03777at 3944.126 kb on - strand, within CCNA_03777at 3944.132 kb on + strand, within CCNA_03777at 3944.171 kb on + strand, within CCNA_03777at 3944.177 kb on + strand, within CCNA_03777at 3944.221 kb on - strand, within CCNA_03777at 3944.227 kb on + strand, within CCNA_03777at 3944.298 kb on + strand, within CCNA_03777at 3944.315 kb on + strand, within CCNA_03777at 3944.315 kb on - strand, within CCNA_03777at 3944.362 kb on - strand, within CCNA_03777at 3944.393 kb on - strand, within CCNA_03777at 3944.419 kb on + strandat 3944.420 kb on - strandat 3944.440 kb on - strandat 3944.440 kb on - strandat 3944.450 kb on - strandat 3944.502 kb on - strandat 3944.502 kb on - strandat 3944.506 kb on - strandat 3944.542 kb on + strandat 3944.544 kb on - strandat 3944.555 kb on - strandat 3944.585 kb on + strandat 3944.655 kb on + strandat 3944.697 kb on - strandat 3944.700 kb on + strandat 3944.781 kb on + strandat 3944.815 kb on + strand, within CCNA_03778at 3944.854 kb on + strand, within CCNA_03778at 3944.903 kb on + strand, within CCNA_03778at 3944.940 kb on + strand, within CCNA_03778at 3945.028 kb on + strand, within CCNA_03778at 3945.028 kb on + strand, within CCNA_03778at 3945.028 kb on + strand, within CCNA_03778at 3945.028 kb on + strand, within CCNA_03778at 3945.028 kb on + strand, within CCNA_03778at 3945.064 kb on + strand, within CCNA_03778at 3945.079 kb on + strand, within CCNA_03778at 3945.082 kb on + strand, within CCNA_03778at 3945.097 kb on - strand, within CCNA_03778at 3945.138 kb on + strand, within CCNA_03778at 3945.221 kb on - strand, within CCNA_03778at 3945.252 kb on + strand, within CCNA_03778at 3945.284 kb on + strand, within CCNA_03778at 3945.305 kb on - strand, within CCNA_03778at 3945.311 kb on + strand, within CCNA_03778at 3945.417 kb on + strandat 3945.469 kb on + strandat 3945.477 kb on - strandat 3945.504 kb on + strandat 3945.597 kb on + strand, within CCNA_03779at 3945.607 kb on + strand, within CCNA_03779at 3945.607 kb on + strand, within CCNA_03779at 3945.607 kb on + strand, within CCNA_03779at 3945.615 kb on - strand, within CCNA_03779at 3945.615 kb on - strand, within CCNA_03779at 3945.640 kb on + strand, within CCNA_03779at 3945.666 kb on - strand, within CCNA_03779at 3945.671 kb on + strand, within CCNA_03779at 3945.696 kb on + strand, within CCNA_03779at 3945.696 kb on + strand, within CCNA_03779at 3945.860 kb on - strandat 3945.862 kb on - strandat 3945.867 kb on + strandat 3945.875 kb on + strandat 3945.875 kb on + strandat 3945.875 kb on + strandat 3945.875 kb on + strandat 3945.875 kb on - strandat 3945.883 kb on - strandat 3945.883 kb on - strandat 3945.883 kb on - strandat 3945.883 kb on - strandat 3945.883 kb on - strandat 3945.913 kb on + strandat 3945.917 kb on + strandat 3946.042 kb on - strandat 3946.052 kb on - strandat 3946.075 kb on - strandat 3946.089 kb on + strandat 3946.127 kb on - strandat 3946.127 kb on - strandat 3946.127 kb on - strandat 3946.144 kb on - strandat 3946.234 kb on + strandat 3946.277 kb on + strandat 3946.277 kb on + strandat 3946.298 kb on + strandat 3946.298 kb on + strandat 3946.298 kb on + strandat 3946.298 kb on + strandat 3946.300 kb on - strandat 3946.306 kb on - strandat 3946.312 kb on + strandat 3946.319 kb on - strandat 3946.358 kb on + strandat 3946.385 kb on - strandat 3946.426 kb on - strandat 3946.429 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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3,943,721 + CCNA_03777 0.25 -0.9
3,943,721 + CCNA_03777 0.25 +0.2
3,943,731 - CCNA_03777 0.26 +0.2
3,943,747 + CCNA_03777 0.27 -0.5
3,943,753 - CCNA_03777 0.28 +0.2
3,943,760 + CCNA_03777 0.28 -0.3
3,943,807 + CCNA_03777 0.33 -1.8
3,943,822 - CCNA_03777 0.34 -0.1
3,943,845 - CCNA_03777 0.36 -0.4
3,943,883 - CCNA_03777 0.40 +0.7
3,943,893 - CCNA_03777 0.41 +0.8
3,943,949 + CCNA_03777 0.46 -1.3
3,943,949 + CCNA_03777 0.46 +0.6
3,943,979 - CCNA_03777 0.49 +1.4
3,944,051 + CCNA_03777 0.56 +1.4
3,944,058 - CCNA_03777 0.57 +0.5
3,944,065 + CCNA_03777 0.57 -0.1
3,944,094 + CCNA_03777 0.60 -0.0
3,944,099 + CCNA_03777 0.60 -0.2
3,944,107 - CCNA_03777 0.61 +0.3
3,944,107 - CCNA_03777 0.61 +0.7
3,944,126 - CCNA_03777 0.63 +0.7
3,944,132 + CCNA_03777 0.64 +0.5
3,944,171 + CCNA_03777 0.67 +0.3
3,944,177 + CCNA_03777 0.68 -1.2
3,944,221 - CCNA_03777 0.72 -0.3
3,944,227 + CCNA_03777 0.73 +2.3
3,944,298 + CCNA_03777 0.79 +0.7
3,944,315 + CCNA_03777 0.81 -1.9
3,944,315 - CCNA_03777 0.81 +0.2
3,944,362 - CCNA_03777 0.85 -0.1
3,944,393 - CCNA_03777 0.88 +0.5
3,944,419 + +1.0
3,944,420 - +0.8
3,944,440 - +0.0
3,944,440 - +0.3
3,944,450 - -0.8
3,944,502 - -0.0
3,944,502 - +1.5
3,944,506 - +0.2
3,944,542 + -1.0
3,944,544 - +1.4
3,944,555 - +0.2
3,944,585 + +0.0
3,944,655 + -0.1
3,944,697 - +0.2
3,944,700 + +1.5
3,944,781 + +0.2
3,944,815 + CCNA_03778 0.13 +2.1
3,944,854 + CCNA_03778 0.18 +0.2
3,944,903 + CCNA_03778 0.25 +0.6
3,944,940 + CCNA_03778 0.30 +0.5
3,945,028 + CCNA_03778 0.41 -1.6
3,945,028 + CCNA_03778 0.41 +0.1
3,945,028 + CCNA_03778 0.41 -1.4
3,945,028 + CCNA_03778 0.41 +0.1
3,945,028 + CCNA_03778 0.41 -0.1
3,945,064 + CCNA_03778 0.46 -0.5
3,945,079 + CCNA_03778 0.48 -1.6
3,945,082 + CCNA_03778 0.48 +0.6
3,945,097 - CCNA_03778 0.50 +0.2
3,945,138 + CCNA_03778 0.56 -0.2
3,945,221 - CCNA_03778 0.67 -0.8
3,945,252 + CCNA_03778 0.71 +0.1
3,945,284 + CCNA_03778 0.75 -1.1
3,945,305 - CCNA_03778 0.78 +0.5
3,945,311 + CCNA_03778 0.79 -0.6
3,945,417 + +0.3
3,945,469 + +0.5
3,945,477 - -0.3
3,945,504 + -0.5
3,945,597 + CCNA_03779 0.13 +0.7
3,945,607 + CCNA_03779 0.16 +0.3
3,945,607 + CCNA_03779 0.16 -0.0
3,945,607 + CCNA_03779 0.16 +1.1
3,945,615 - CCNA_03779 0.18 +0.6
3,945,615 - CCNA_03779 0.18 +1.1
3,945,640 + CCNA_03779 0.26 +1.0
3,945,666 - CCNA_03779 0.34 -0.1
3,945,671 + CCNA_03779 0.35 +0.2
3,945,696 + CCNA_03779 0.43 +0.1
3,945,696 + CCNA_03779 0.43 -0.3
3,945,860 - +0.3
3,945,862 - +0.1
3,945,867 + -0.5
3,945,875 + -1.3
3,945,875 + +0.0
3,945,875 + -0.5
3,945,875 + +0.6
3,945,875 - +0.3
3,945,883 - +0.1
3,945,883 - +0.2
3,945,883 - -0.2
3,945,883 - +0.3
3,945,883 - -0.4
3,945,913 + -2.4
3,945,917 + -1.4
3,946,042 - -1.1
3,946,052 - +1.4
3,946,075 - -0.6
3,946,089 + -0.4
3,946,127 - -1.6
3,946,127 - +0.0
3,946,127 - -1.9
3,946,144 - -0.0
3,946,234 + +0.2
3,946,277 + +0.2
3,946,277 + +0.1
3,946,298 + +0.6
3,946,298 + +0.2
3,946,298 + +0.1
3,946,298 + +0.1
3,946,300 - +0.1
3,946,306 - +0.3
3,946,312 + -0.0
3,946,319 - +0.7
3,946,358 + -0.0
3,946,385 - +0.1
3,946,426 - +1.4
3,946,429 + +0.1

Or see this region's nucleotide sequence