Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03777 and CCNA_03778 are separated by 202 nucleotides CCNA_03778 and CCNA_03779 are separated by 84 nucleotides CCNA_03779 and CCNA_03780 are separated by 528 nucleotides
CCNA_03777: CCNA_03777 - Tas protein, at 3,943,462 to 3,944,514
_03777
CCNA_03778: CCNA_03778 - integral membrane protein, at 3,944,717 to 3,945,469
_03778
CCNA_03779: CCNA_03779 - hypothetical protein, at 3,945,554 to 3,945,886
_03779
CCNA_03780: CCNA_03780 - conserved hypothetical secreted protein, at 3,946,415 to 3,947,149
_03780
Position (kb)
3944
3945
3946 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3943.721 kb on + strand, within CCNA_03777 at 3943.721 kb on + strand, within CCNA_03777 at 3943.731 kb on - strand, within CCNA_03777 at 3943.747 kb on + strand, within CCNA_03777 at 3943.753 kb on - strand, within CCNA_03777 at 3943.760 kb on + strand, within CCNA_03777 at 3943.807 kb on + strand, within CCNA_03777 at 3943.822 kb on - strand, within CCNA_03777 at 3943.845 kb on - strand, within CCNA_03777 at 3943.883 kb on - strand, within CCNA_03777 at 3943.893 kb on - strand, within CCNA_03777 at 3943.949 kb on + strand, within CCNA_03777 at 3943.949 kb on + strand, within CCNA_03777 at 3943.979 kb on - strand, within CCNA_03777 at 3944.051 kb on + strand, within CCNA_03777 at 3944.058 kb on - strand, within CCNA_03777 at 3944.065 kb on + strand, within CCNA_03777 at 3944.094 kb on + strand, within CCNA_03777 at 3944.099 kb on + strand, within CCNA_03777 at 3944.107 kb on - strand, within CCNA_03777 at 3944.107 kb on - strand, within CCNA_03777 at 3944.126 kb on - strand, within CCNA_03777 at 3944.132 kb on + strand, within CCNA_03777 at 3944.171 kb on + strand, within CCNA_03777 at 3944.177 kb on + strand, within CCNA_03777 at 3944.221 kb on - strand, within CCNA_03777 at 3944.227 kb on + strand, within CCNA_03777 at 3944.298 kb on + strand, within CCNA_03777 at 3944.315 kb on + strand, within CCNA_03777 at 3944.315 kb on - strand, within CCNA_03777 at 3944.362 kb on - strand, within CCNA_03777 at 3944.393 kb on - strand, within CCNA_03777 at 3944.419 kb on + strand at 3944.420 kb on - strand at 3944.440 kb on - strand at 3944.440 kb on - strand at 3944.450 kb on - strand at 3944.502 kb on - strand at 3944.502 kb on - strand at 3944.506 kb on - strand at 3944.542 kb on + strand at 3944.544 kb on - strand at 3944.555 kb on - strand at 3944.585 kb on + strand at 3944.655 kb on + strand at 3944.697 kb on - strand at 3944.700 kb on + strand at 3944.781 kb on + strand at 3944.815 kb on + strand, within CCNA_03778 at 3944.854 kb on + strand, within CCNA_03778 at 3944.903 kb on + strand, within CCNA_03778 at 3944.940 kb on + strand, within CCNA_03778 at 3945.028 kb on + strand, within CCNA_03778 at 3945.028 kb on + strand, within CCNA_03778 at 3945.028 kb on + strand, within CCNA_03778 at 3945.028 kb on + strand, within CCNA_03778 at 3945.028 kb on + strand, within CCNA_03778 at 3945.064 kb on + strand, within CCNA_03778 at 3945.079 kb on + strand, within CCNA_03778 at 3945.082 kb on + strand, within CCNA_03778 at 3945.097 kb on - strand, within CCNA_03778 at 3945.138 kb on + strand, within CCNA_03778 at 3945.221 kb on - strand, within CCNA_03778 at 3945.252 kb on + strand, within CCNA_03778 at 3945.284 kb on + strand, within CCNA_03778 at 3945.305 kb on - strand, within CCNA_03778 at 3945.311 kb on + strand, within CCNA_03778 at 3945.417 kb on + strand at 3945.469 kb on + strand at 3945.477 kb on - strand at 3945.504 kb on + strand at 3945.597 kb on + strand, within CCNA_03779 at 3945.607 kb on + strand, within CCNA_03779 at 3945.607 kb on + strand, within CCNA_03779 at 3945.607 kb on + strand, within CCNA_03779 at 3945.615 kb on - strand, within CCNA_03779 at 3945.615 kb on - strand, within CCNA_03779 at 3945.640 kb on + strand, within CCNA_03779 at 3945.666 kb on - strand, within CCNA_03779 at 3945.671 kb on + strand, within CCNA_03779 at 3945.696 kb on + strand, within CCNA_03779 at 3945.696 kb on + strand, within CCNA_03779 at 3945.860 kb on - strand at 3945.862 kb on - strand at 3945.867 kb on + strand at 3945.875 kb on + strand at 3945.875 kb on + strand at 3945.875 kb on + strand at 3945.875 kb on + strand at 3945.875 kb on - strand at 3945.883 kb on - strand at 3945.883 kb on - strand at 3945.883 kb on - strand at 3945.883 kb on - strand at 3945.883 kb on - strand at 3945.913 kb on + strand at 3945.917 kb on + strand at 3946.042 kb on - strand at 3946.052 kb on - strand at 3946.075 kb on - strand at 3946.089 kb on + strand at 3946.127 kb on - strand at 3946.127 kb on - strand at 3946.127 kb on - strand at 3946.144 kb on - strand at 3946.234 kb on + strand at 3946.277 kb on + strand at 3946.277 kb on + strand at 3946.298 kb on + strand at 3946.298 kb on + strand at 3946.298 kb on + strand at 3946.298 kb on + strand at 3946.300 kb on - strand at 3946.306 kb on - strand at 3946.312 kb on + strand at 3946.319 kb on - strand at 3946.358 kb on + strand at 3946.385 kb on - strand at 3946.426 kb on - strand at 3946.429 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,943,721 + CCNA_03777 0.25 -0.9 3,943,721 + CCNA_03777 0.25 +0.2 3,943,731 - CCNA_03777 0.26 +0.2 3,943,747 + CCNA_03777 0.27 -0.5 3,943,753 - CCNA_03777 0.28 +0.2 3,943,760 + CCNA_03777 0.28 -0.3 3,943,807 + CCNA_03777 0.33 -1.8 3,943,822 - CCNA_03777 0.34 -0.1 3,943,845 - CCNA_03777 0.36 -0.4 3,943,883 - CCNA_03777 0.40 +0.7 3,943,893 - CCNA_03777 0.41 +0.8 3,943,949 + CCNA_03777 0.46 -1.3 3,943,949 + CCNA_03777 0.46 +0.6 3,943,979 - CCNA_03777 0.49 +1.4 3,944,051 + CCNA_03777 0.56 +1.4 3,944,058 - CCNA_03777 0.57 +0.5 3,944,065 + CCNA_03777 0.57 -0.1 3,944,094 + CCNA_03777 0.60 -0.0 3,944,099 + CCNA_03777 0.60 -0.2 3,944,107 - CCNA_03777 0.61 +0.3 3,944,107 - CCNA_03777 0.61 +0.7 3,944,126 - CCNA_03777 0.63 +0.7 3,944,132 + CCNA_03777 0.64 +0.5 3,944,171 + CCNA_03777 0.67 +0.3 3,944,177 + CCNA_03777 0.68 -1.2 3,944,221 - CCNA_03777 0.72 -0.3 3,944,227 + CCNA_03777 0.73 +2.3 3,944,298 + CCNA_03777 0.79 +0.7 3,944,315 + CCNA_03777 0.81 -1.9 3,944,315 - CCNA_03777 0.81 +0.2 3,944,362 - CCNA_03777 0.85 -0.1 3,944,393 - CCNA_03777 0.88 +0.5 3,944,419 + +1.0 3,944,420 - +0.8 3,944,440 - +0.0 3,944,440 - +0.3 3,944,450 - -0.8 3,944,502 - -0.0 3,944,502 - +1.5 3,944,506 - +0.2 3,944,542 + -1.0 3,944,544 - +1.4 3,944,555 - +0.2 3,944,585 + +0.0 3,944,655 + -0.1 3,944,697 - +0.2 3,944,700 + +1.5 3,944,781 + +0.2 3,944,815 + CCNA_03778 0.13 +2.1 3,944,854 + CCNA_03778 0.18 +0.2 3,944,903 + CCNA_03778 0.25 +0.6 3,944,940 + CCNA_03778 0.30 +0.5 3,945,028 + CCNA_03778 0.41 -1.6 3,945,028 + CCNA_03778 0.41 +0.1 3,945,028 + CCNA_03778 0.41 -1.4 3,945,028 + CCNA_03778 0.41 +0.1 3,945,028 + CCNA_03778 0.41 -0.1 3,945,064 + CCNA_03778 0.46 -0.5 3,945,079 + CCNA_03778 0.48 -1.6 3,945,082 + CCNA_03778 0.48 +0.6 3,945,097 - CCNA_03778 0.50 +0.2 3,945,138 + CCNA_03778 0.56 -0.2 3,945,221 - CCNA_03778 0.67 -0.8 3,945,252 + CCNA_03778 0.71 +0.1 3,945,284 + CCNA_03778 0.75 -1.1 3,945,305 - CCNA_03778 0.78 +0.5 3,945,311 + CCNA_03778 0.79 -0.6 3,945,417 + +0.3 3,945,469 + +0.5 3,945,477 - -0.3 3,945,504 + -0.5 3,945,597 + CCNA_03779 0.13 +0.7 3,945,607 + CCNA_03779 0.16 +0.3 3,945,607 + CCNA_03779 0.16 -0.0 3,945,607 + CCNA_03779 0.16 +1.1 3,945,615 - CCNA_03779 0.18 +0.6 3,945,615 - CCNA_03779 0.18 +1.1 3,945,640 + CCNA_03779 0.26 +1.0 3,945,666 - CCNA_03779 0.34 -0.1 3,945,671 + CCNA_03779 0.35 +0.2 3,945,696 + CCNA_03779 0.43 +0.1 3,945,696 + CCNA_03779 0.43 -0.3 3,945,860 - +0.3 3,945,862 - +0.1 3,945,867 + -0.5 3,945,875 + -1.3 3,945,875 + +0.0 3,945,875 + -0.5 3,945,875 + +0.6 3,945,875 - +0.3 3,945,883 - +0.1 3,945,883 - +0.2 3,945,883 - -0.2 3,945,883 - +0.3 3,945,883 - -0.4 3,945,913 + -2.4 3,945,917 + -1.4 3,946,042 - -1.1 3,946,052 - +1.4 3,946,075 - -0.6 3,946,089 + -0.4 3,946,127 - -1.6 3,946,127 - +0.0 3,946,127 - -1.9 3,946,144 - -0.0 3,946,234 + +0.2 3,946,277 + +0.2 3,946,277 + +0.1 3,946,298 + +0.6 3,946,298 + +0.2 3,946,298 + +0.1 3,946,298 + +0.1 3,946,300 - +0.1 3,946,306 - +0.3 3,946,312 + -0.0 3,946,319 - +0.7 3,946,358 + -0.0 3,946,385 - +0.1 3,946,426 - +1.4 3,946,429 + +0.1
Or see this region's nucleotide sequence