Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03644 and CCNA_03645 are separated by 171 nucleotides CCNA_03645 and CCNA_03646 are separated by 9 nucleotides CCNA_03646 and CCNA_03647 are separated by 80 nucleotides CCNA_03647 and CCNA_03648 overlap by 4 nucleotides
CCNA_03644: CCNA_03644 - succinate dehydrogenase cytochrome B-556 subunit, at 3,803,238 to 3,803,645
_03644
CCNA_03645: CCNA_03645 - nucleotide-sugar pyrophosphatase, at 3,803,817 to 3,804,404
_03645
CCNA_03646: CCNA_03646 - ATPase, at 3,804,414 to 3,805,532
_03646
CCNA_03647: CCNA_03647 - lysophospholipid acyltransferases, at 3,805,613 to 3,806,488
_03647
CCNA_03648: CCNA_03648 - YjeE family ATPase, at 3,806,485 to 3,806,931
_03648
Position (kb)
3804
3805
3806 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3803.721 kb on + strand at 3803.726 kb on - strand at 3803.728 kb on + strand at 3803.728 kb on + strand at 3803.736 kb on - strand at 3803.775 kb on + strand at 3803.783 kb on - strand at 3803.787 kb on + strand at 3803.797 kb on - strand at 3803.814 kb on + strand at 3803.814 kb on + strand at 3803.814 kb on + strand at 3803.814 kb on + strand at 3803.814 kb on + strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.824 kb on + strand at 3803.829 kb on - strand at 3803.834 kb on + strand at 3803.834 kb on - strand at 3803.839 kb on - strand at 3803.844 kb on - strand at 3803.849 kb on - strand at 3803.874 kb on - strand at 3803.887 kb on - strand, within CCNA_03645 at 3803.933 kb on - strand, within CCNA_03645 at 3803.940 kb on + strand, within CCNA_03645 at 3803.948 kb on - strand, within CCNA_03645 at 3803.979 kb on - strand, within CCNA_03645 at 3804.042 kb on + strand, within CCNA_03645 at 3804.048 kb on + strand, within CCNA_03645 at 3804.050 kb on - strand, within CCNA_03645 at 3804.059 kb on - strand, within CCNA_03645 at 3804.074 kb on - strand, within CCNA_03645 at 3804.074 kb on - strand, within CCNA_03645 at 3804.079 kb on - strand, within CCNA_03645 at 3804.094 kb on + strand, within CCNA_03645 at 3804.119 kb on - strand, within CCNA_03645 at 3804.135 kb on + strand, within CCNA_03645 at 3804.138 kb on - strand, within CCNA_03645 at 3804.141 kb on - strand, within CCNA_03645 at 3804.189 kb on + strand, within CCNA_03645 at 3804.198 kb on + strand, within CCNA_03645 at 3804.231 kb on - strand, within CCNA_03645 at 3804.237 kb on + strand, within CCNA_03645 at 3804.243 kb on + strand, within CCNA_03645 at 3804.243 kb on - strand, within CCNA_03645 at 3804.245 kb on + strand, within CCNA_03645 at 3804.251 kb on - strand, within CCNA_03645 at 3804.314 kb on - strand, within CCNA_03645 at 3804.329 kb on - strand, within CCNA_03645 at 3804.343 kb on + strand, within CCNA_03645 at 3804.351 kb on - strand at 3804.363 kb on - strand at 3804.363 kb on - strand at 3804.426 kb on - strand at 3804.467 kb on + strand at 3804.483 kb on + strand at 3804.505 kb on + strand at 3804.505 kb on + strand at 3804.505 kb on + strand at 3804.505 kb on + strand at 3804.505 kb on + strand at 3804.508 kb on - strand at 3804.510 kb on + strand at 3804.513 kb on - strand at 3804.513 kb on - strand at 3804.513 kb on - strand at 3804.513 kb on - strand at 3804.513 kb on - strand at 3804.513 kb on - strand at 3804.513 kb on - strand at 3804.513 kb on - strand at 3804.518 kb on - strand at 3804.526 kb on + strand, within CCNA_03646 at 3804.526 kb on + strand, within CCNA_03646 at 3804.534 kb on - strand, within CCNA_03646 at 3804.534 kb on - strand, within CCNA_03646 at 3804.534 kb on - strand, within CCNA_03646 at 3804.534 kb on - strand, within CCNA_03646 at 3804.556 kb on + strand, within CCNA_03646 at 3804.578 kb on + strand, within CCNA_03646 at 3804.581 kb on - strand, within CCNA_03646 at 3804.598 kb on + strand, within CCNA_03646 at 3804.598 kb on + strand, within CCNA_03646 at 3804.606 kb on - strand, within CCNA_03646 at 3804.634 kb on - strand, within CCNA_03646 at 3804.652 kb on - strand, within CCNA_03646 at 3804.654 kb on - strand, within CCNA_03646 at 3804.678 kb on - strand, within CCNA_03646 at 3804.691 kb on - strand, within CCNA_03646 at 3804.702 kb on - strand, within CCNA_03646 at 3804.731 kb on - strand, within CCNA_03646 at 3804.794 kb on - strand, within CCNA_03646 at 3804.794 kb on - strand, within CCNA_03646 at 3804.809 kb on - strand, within CCNA_03646 at 3804.814 kb on + strand, within CCNA_03646 at 3804.814 kb on + strand, within CCNA_03646 at 3804.822 kb on - strand, within CCNA_03646 at 3804.822 kb on - strand, within CCNA_03646 at 3804.867 kb on + strand, within CCNA_03646 at 3804.893 kb on + strand, within CCNA_03646 at 3804.915 kb on + strand, within CCNA_03646 at 3804.917 kb on + strand, within CCNA_03646 at 3804.925 kb on - strand, within CCNA_03646 at 3804.945 kb on - strand, within CCNA_03646 at 3804.985 kb on + strand, within CCNA_03646 at 3804.985 kb on + strand, within CCNA_03646 at 3804.993 kb on - strand, within CCNA_03646 at 3805.028 kb on + strand, within CCNA_03646 at 3805.028 kb on + strand, within CCNA_03646 at 3805.030 kb on - strand, within CCNA_03646 at 3805.079 kb on + strand, within CCNA_03646 at 3805.142 kb on + strand, within CCNA_03646 at 3805.171 kb on + strand, within CCNA_03646 at 3805.171 kb on + strand, within CCNA_03646 at 3805.171 kb on + strand, within CCNA_03646 at 3805.171 kb on + strand, within CCNA_03646 at 3805.171 kb on + strand, within CCNA_03646 at 3805.171 kb on + strand, within CCNA_03646 at 3805.171 kb on + strand, within CCNA_03646 at 3805.171 kb on + strand, within CCNA_03646 at 3805.171 kb on + strand, within CCNA_03646 at 3805.171 kb on + strand, within CCNA_03646 at 3805.171 kb on + strand, within CCNA_03646 at 3805.171 kb on + strand, within CCNA_03646 at 3805.171 kb on + strand, within CCNA_03646 at 3805.171 kb on + strand, within CCNA_03646 at 3805.171 kb on + strand, within CCNA_03646 at 3805.171 kb on + strand, within CCNA_03646 at 3805.172 kb on - strand, within CCNA_03646 at 3805.179 kb on - strand, within CCNA_03646 at 3805.179 kb on - strand, within CCNA_03646 at 3805.179 kb on - strand, within CCNA_03646 at 3805.179 kb on - strand, within CCNA_03646 at 3805.179 kb on - strand, within CCNA_03646 at 3805.179 kb on - strand, within CCNA_03646 at 3805.179 kb on - strand, within CCNA_03646 at 3805.179 kb on - strand, within CCNA_03646 at 3805.179 kb on - strand, within CCNA_03646 at 3805.181 kb on + strand, within CCNA_03646 at 3805.213 kb on + strand, within CCNA_03646 at 3805.245 kb on - strand, within CCNA_03646 at 3805.305 kb on + strand, within CCNA_03646 at 3805.307 kb on - strand, within CCNA_03646 at 3805.324 kb on + strand, within CCNA_03646 at 3805.326 kb on - strand, within CCNA_03646 at 3805.352 kb on + strand, within CCNA_03646 at 3805.355 kb on - strand, within CCNA_03646 at 3805.360 kb on - strand, within CCNA_03646 at 3805.369 kb on + strand, within CCNA_03646 at 3805.377 kb on - strand, within CCNA_03646 at 3805.406 kb on - strand, within CCNA_03646 at 3805.426 kb on + strand at 3805.426 kb on + strand at 3805.452 kb on - strand at 3805.482 kb on - strand at 3805.565 kb on + strand at 3805.573 kb on - strand at 3805.586 kb on + strand at 3805.640 kb on + strand at 3805.648 kb on - strand at 3805.732 kb on + strand, within CCNA_03647 at 3805.732 kb on + strand, within CCNA_03647 at 3805.732 kb on + strand, within CCNA_03647 at 3805.732 kb on + strand, within CCNA_03647 at 3805.733 kb on - strand, within CCNA_03647 at 3805.737 kb on + strand, within CCNA_03647 at 3805.740 kb on - strand, within CCNA_03647 at 3805.740 kb on - strand, within CCNA_03647 at 3805.745 kb on - strand, within CCNA_03647 at 3805.779 kb on - strand, within CCNA_03647 at 3805.782 kb on + strand, within CCNA_03647 at 3805.791 kb on - strand, within CCNA_03647 at 3805.793 kb on + strand, within CCNA_03647 at 3805.817 kb on - strand, within CCNA_03647 at 3805.954 kb on + strand, within CCNA_03647 at 3805.962 kb on - strand, within CCNA_03647 at 3805.987 kb on - strand, within CCNA_03647 at 3806.018 kb on + strand, within CCNA_03647 at 3806.018 kb on + strand, within CCNA_03647 at 3806.030 kb on + strand, within CCNA_03647 at 3806.030 kb on + strand, within CCNA_03647 at 3806.031 kb on + strand, within CCNA_03647 at 3806.038 kb on - strand, within CCNA_03647 at 3806.038 kb on - strand, within CCNA_03647 at 3806.081 kb on + strand, within CCNA_03647 at 3806.086 kb on + strand, within CCNA_03647 at 3806.087 kb on + strand, within CCNA_03647 at 3806.124 kb on - strand, within CCNA_03647 at 3806.187 kb on - strand, within CCNA_03647 at 3806.201 kb on + strand, within CCNA_03647 at 3806.208 kb on - strand, within CCNA_03647 at 3806.217 kb on - strand, within CCNA_03647 at 3806.224 kb on + strand, within CCNA_03647 at 3806.260 kb on - strand, within CCNA_03647 at 3806.281 kb on - strand, within CCNA_03647 at 3806.281 kb on - strand, within CCNA_03647 at 3806.307 kb on + strand, within CCNA_03647 at 3806.321 kb on + strand, within CCNA_03647 at 3806.336 kb on + strand, within CCNA_03647 at 3806.344 kb on - strand, within CCNA_03647 at 3806.344 kb on - strand, within CCNA_03647 at 3806.349 kb on - strand, within CCNA_03647 at 3806.378 kb on - strand, within CCNA_03647 at 3806.378 kb on - strand, within CCNA_03647 at 3806.414 kb on + strand at 3806.437 kb on + strand at 3806.445 kb on - strand at 3806.457 kb on - strand at 3806.477 kb on + strand at 3806.499 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,803,721 + -0.9 3,803,726 - -0.1 3,803,728 + -0.2 3,803,728 + -0.0 3,803,736 - -0.6 3,803,775 + -0.6 3,803,783 - +0.0 3,803,787 + -1.3 3,803,797 - -0.2 3,803,814 + -0.8 3,803,814 + +0.6 3,803,814 + +1.0 3,803,814 + -1.1 3,803,814 + -0.2 3,803,822 - -0.4 3,803,822 - +0.3 3,803,822 - -0.4 3,803,822 - -0.6 3,803,822 - +1.4 3,803,824 + -0.9 3,803,829 - +0.6 3,803,834 + -1.4 3,803,834 - -0.4 3,803,839 - -0.2 3,803,844 - +0.3 3,803,849 - +1.1 3,803,874 - -0.3 3,803,887 - CCNA_03645 0.12 -0.2 3,803,933 - CCNA_03645 0.20 +0.3 3,803,940 + CCNA_03645 0.21 -1.9 3,803,948 - CCNA_03645 0.22 +0.0 3,803,979 - CCNA_03645 0.28 +0.0 3,804,042 + CCNA_03645 0.38 -0.5 3,804,048 + CCNA_03645 0.39 +0.5 3,804,050 - CCNA_03645 0.40 +0.1 3,804,059 - CCNA_03645 0.41 +0.0 3,804,074 - CCNA_03645 0.44 -1.5 3,804,074 - CCNA_03645 0.44 +0.2 3,804,079 - CCNA_03645 0.45 -0.4 3,804,094 + CCNA_03645 0.47 -1.5 3,804,119 - CCNA_03645 0.51 +0.2 3,804,135 + CCNA_03645 0.54 -0.4 3,804,138 - CCNA_03645 0.55 -2.4 3,804,141 - CCNA_03645 0.55 +0.2 3,804,189 + CCNA_03645 0.63 +0.1 3,804,198 + CCNA_03645 0.65 +0.1 3,804,231 - CCNA_03645 0.70 +0.2 3,804,237 + CCNA_03645 0.71 -0.3 3,804,243 + CCNA_03645 0.72 -0.4 3,804,243 - CCNA_03645 0.72 -0.4 3,804,245 + CCNA_03645 0.73 -1.4 3,804,251 - CCNA_03645 0.74 -0.7 3,804,314 - CCNA_03645 0.85 +0.4 3,804,329 - CCNA_03645 0.87 -0.0 3,804,343 + CCNA_03645 0.89 -0.2 3,804,351 - -0.6 3,804,363 - -0.6 3,804,363 - -0.2 3,804,426 - -0.7 3,804,467 + -0.4 3,804,483 + -0.6 3,804,505 + +0.4 3,804,505 + -1.6 3,804,505 + -0.8 3,804,505 + -0.8 3,804,505 + -0.1 3,804,508 - -1.4 3,804,510 + -0.7 3,804,513 - +0.1 3,804,513 - +0.0 3,804,513 - +1.1 3,804,513 - -0.5 3,804,513 - -0.0 3,804,513 - +0.5 3,804,513 - -0.4 3,804,513 - +1.9 3,804,518 - -1.4 3,804,526 + CCNA_03646 0.10 +2.4 3,804,526 + CCNA_03646 0.10 +0.2 3,804,534 - CCNA_03646 0.11 +2.0 3,804,534 - CCNA_03646 0.11 +0.6 3,804,534 - CCNA_03646 0.11 -0.7 3,804,534 - CCNA_03646 0.11 -0.4 3,804,556 + CCNA_03646 0.13 -0.5 3,804,578 + CCNA_03646 0.15 -1.3 3,804,581 - CCNA_03646 0.15 -1.1 3,804,598 + CCNA_03646 0.16 +0.2 3,804,598 + CCNA_03646 0.16 -1.1 3,804,606 - CCNA_03646 0.17 -0.8 3,804,634 - CCNA_03646 0.20 +0.8 3,804,652 - CCNA_03646 0.21 -1.7 3,804,654 - CCNA_03646 0.21 -1.3 3,804,678 - CCNA_03646 0.24 -0.2 3,804,691 - CCNA_03646 0.25 +0.0 3,804,702 - CCNA_03646 0.26 -0.9 3,804,731 - CCNA_03646 0.28 -1.4 3,804,794 - CCNA_03646 0.34 +0.7 3,804,794 - CCNA_03646 0.34 -1.0 3,804,809 - CCNA_03646 0.35 +0.7 3,804,814 + CCNA_03646 0.36 -0.2 3,804,814 + CCNA_03646 0.36 +2.9 3,804,822 - CCNA_03646 0.36 -0.0 3,804,822 - CCNA_03646 0.36 -0.5 3,804,867 + CCNA_03646 0.40 -0.5 3,804,893 + CCNA_03646 0.43 -1.2 3,804,915 + CCNA_03646 0.45 +0.0 3,804,917 + CCNA_03646 0.45 -0.7 3,804,925 - CCNA_03646 0.46 -1.3 3,804,945 - CCNA_03646 0.47 -0.3 3,804,985 + CCNA_03646 0.51 +0.0 3,804,985 + CCNA_03646 0.51 -0.6 3,804,993 - CCNA_03646 0.52 -1.6 3,805,028 + CCNA_03646 0.55 -1.1 3,805,028 + CCNA_03646 0.55 -0.7 3,805,030 - CCNA_03646 0.55 +0.2 3,805,079 + CCNA_03646 0.59 -2.0 3,805,142 + CCNA_03646 0.65 +0.2 3,805,171 + CCNA_03646 0.68 -0.6 3,805,171 + CCNA_03646 0.68 +0.4 3,805,171 + CCNA_03646 0.68 -1.2 3,805,171 + CCNA_03646 0.68 +0.1 3,805,171 + CCNA_03646 0.68 +0.7 3,805,171 + CCNA_03646 0.68 -1.0 3,805,171 + CCNA_03646 0.68 -0.0 3,805,171 + CCNA_03646 0.68 -0.9 3,805,171 + CCNA_03646 0.68 -1.9 3,805,171 + CCNA_03646 0.68 +0.8 3,805,171 + CCNA_03646 0.68 -1.3 3,805,171 + CCNA_03646 0.68 -1.1 3,805,171 + CCNA_03646 0.68 -0.3 3,805,171 + CCNA_03646 0.68 +0.8 3,805,171 + CCNA_03646 0.68 -0.8 3,805,171 + CCNA_03646 0.68 -0.5 3,805,172 - CCNA_03646 0.68 +0.1 3,805,179 - CCNA_03646 0.68 +1.6 3,805,179 - CCNA_03646 0.68 -0.4 3,805,179 - CCNA_03646 0.68 -0.1 3,805,179 - CCNA_03646 0.68 +1.1 3,805,179 - CCNA_03646 0.68 -0.2 3,805,179 - CCNA_03646 0.68 -0.2 3,805,179 - CCNA_03646 0.68 -0.1 3,805,179 - CCNA_03646 0.68 -0.2 3,805,179 - CCNA_03646 0.68 -1.6 3,805,181 + CCNA_03646 0.69 -1.2 3,805,213 + CCNA_03646 0.71 -2.8 3,805,245 - CCNA_03646 0.74 +0.1 3,805,305 + CCNA_03646 0.80 -0.2 3,805,307 - CCNA_03646 0.80 -1.5 3,805,324 + CCNA_03646 0.81 -1.9 3,805,326 - CCNA_03646 0.82 +1.8 3,805,352 + CCNA_03646 0.84 -0.5 3,805,355 - CCNA_03646 0.84 +0.4 3,805,360 - CCNA_03646 0.85 -0.8 3,805,369 + CCNA_03646 0.85 -0.7 3,805,377 - CCNA_03646 0.86 -0.5 3,805,406 - CCNA_03646 0.89 -0.4 3,805,426 + -0.7 3,805,426 + -1.2 3,805,452 - -0.4 3,805,482 - -0.6 3,805,565 + -0.5 3,805,573 - -0.6 3,805,586 + -0.7 3,805,640 + -0.2 3,805,648 - -1.6 3,805,732 + CCNA_03647 0.14 +0.6 3,805,732 + CCNA_03647 0.14 -0.7 3,805,732 + CCNA_03647 0.14 +0.4 3,805,732 + CCNA_03647 0.14 -0.1 3,805,733 - CCNA_03647 0.14 -0.2 3,805,737 + CCNA_03647 0.14 -0.1 3,805,740 - CCNA_03647 0.14 +0.1 3,805,740 - CCNA_03647 0.14 -0.5 3,805,745 - CCNA_03647 0.15 +0.9 3,805,779 - CCNA_03647 0.19 -0.8 3,805,782 + CCNA_03647 0.19 -0.4 3,805,791 - CCNA_03647 0.20 -0.6 3,805,793 + CCNA_03647 0.21 +0.6 3,805,817 - CCNA_03647 0.23 +0.4 3,805,954 + CCNA_03647 0.39 +0.4 3,805,962 - CCNA_03647 0.40 -1.2 3,805,987 - CCNA_03647 0.43 -1.8 3,806,018 + CCNA_03647 0.46 -0.3 3,806,018 + CCNA_03647 0.46 -0.5 3,806,030 + CCNA_03647 0.48 +0.4 3,806,030 + CCNA_03647 0.48 -0.1 3,806,031 + CCNA_03647 0.48 +0.2 3,806,038 - CCNA_03647 0.49 +0.7 3,806,038 - CCNA_03647 0.49 +1.6 3,806,081 + CCNA_03647 0.53 -0.1 3,806,086 + CCNA_03647 0.54 -0.0 3,806,087 + CCNA_03647 0.54 +0.0 3,806,124 - CCNA_03647 0.58 -0.2 3,806,187 - CCNA_03647 0.66 -2.1 3,806,201 + CCNA_03647 0.67 +0.7 3,806,208 - CCNA_03647 0.68 -0.2 3,806,217 - CCNA_03647 0.69 -0.3 3,806,224 + CCNA_03647 0.70 -0.4 3,806,260 - CCNA_03647 0.74 +0.1 3,806,281 - CCNA_03647 0.76 +0.9 3,806,281 - CCNA_03647 0.76 -0.6 3,806,307 + CCNA_03647 0.79 +0.0 3,806,321 + CCNA_03647 0.81 +0.5 3,806,336 + CCNA_03647 0.83 -0.3 3,806,344 - CCNA_03647 0.83 -1.0 3,806,344 - CCNA_03647 0.83 -0.3 3,806,349 - CCNA_03647 0.84 +0.3 3,806,378 - CCNA_03647 0.87 -0.1 3,806,378 - CCNA_03647 0.87 +0.0 3,806,414 + +0.4 3,806,437 + -0.8 3,806,445 - -0.8 3,806,457 - -0.8 3,806,477 + -1.0 3,806,499 - -0.8
Or see this region's nucleotide sequence