Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03612 and CCNA_03613 are separated by 399 nucleotides CCNA_03613 and CCNA_03614 are separated by 59 nucleotides CCNA_03614 and CCNA_03615 are separated by 100 nucleotides
CCNA_03612: CCNA_03612 - HTH XRE-family transcriptional regulator, at 3,767,028 to 3,767,276
_03612
CCNA_03613: CCNA_03613 - 3-hydroxybutyryl-CoA dehydratase, at 3,767,676 to 3,768,128
_03613
CCNA_03614: CCNA_03614 - hypothetical protein, at 3,768,188 to 3,768,616
_03614
CCNA_03615: CCNA_03615 - TonB dependent receptor, at 3,768,717 to 3,770,777
_03615
Position (kb)
3768
3769 Strain fitness (log2 ratio)
-2
-1
0
1 at 3767.195 kb on - strand, within CCNA_03612 at 3767.225 kb on - strand, within CCNA_03612 at 3767.236 kb on + strand, within CCNA_03612 at 3767.244 kb on - strand, within CCNA_03612 at 3767.244 kb on - strand, within CCNA_03612 at 3767.244 kb on - strand, within CCNA_03612 at 3767.276 kb on + strand at 3767.398 kb on + strand at 3767.420 kb on - strand at 3767.434 kb on + strand at 3767.439 kb on + strand at 3767.439 kb on + strand at 3767.463 kb on - strand at 3767.526 kb on + strand at 3767.526 kb on + strand at 3767.528 kb on + strand at 3767.534 kb on - strand at 3767.542 kb on + strand at 3767.550 kb on - strand at 3767.560 kb on + strand at 3767.589 kb on + strand at 3767.607 kb on - strand at 3767.618 kb on + strand at 3767.618 kb on + strand at 3767.621 kb on - strand at 3767.626 kb on - strand at 3767.699 kb on + strand at 3767.715 kb on - strand at 3767.720 kb on + strand at 3767.742 kb on - strand, within CCNA_03613 at 3767.758 kb on + strand, within CCNA_03613 at 3767.758 kb on + strand, within CCNA_03613 at 3767.797 kb on + strand, within CCNA_03613 at 3767.798 kb on + strand, within CCNA_03613 at 3767.806 kb on - strand, within CCNA_03613 at 3767.807 kb on + strand, within CCNA_03613 at 3767.817 kb on + strand, within CCNA_03613 at 3767.825 kb on - strand, within CCNA_03613 at 3767.860 kb on + strand, within CCNA_03613 at 3767.875 kb on - strand, within CCNA_03613 at 3767.881 kb on + strand, within CCNA_03613 at 3767.897 kb on + strand, within CCNA_03613 at 3767.900 kb on - strand, within CCNA_03613 at 3767.940 kb on - strand, within CCNA_03613 at 3767.940 kb on - strand, within CCNA_03613 at 3767.950 kb on - strand, within CCNA_03613 at 3767.951 kb on - strand, within CCNA_03613 at 3767.961 kb on - strand, within CCNA_03613 at 3768.033 kb on + strand, within CCNA_03613 at 3768.033 kb on + strand, within CCNA_03613 at 3768.033 kb on + strand, within CCNA_03613 at 3768.041 kb on - strand, within CCNA_03613 at 3768.041 kb on - strand, within CCNA_03613 at 3768.041 kb on - strand, within CCNA_03613 at 3768.041 kb on - strand, within CCNA_03613 at 3768.041 kb on - strand, within CCNA_03613 at 3768.048 kb on + strand, within CCNA_03613 at 3768.071 kb on + strand, within CCNA_03613 at 3768.082 kb on - strand, within CCNA_03613 at 3768.096 kb on - strand at 3768.115 kb on + strand at 3768.166 kb on + strand at 3768.166 kb on + strand at 3768.166 kb on + strand at 3768.168 kb on - strand at 3768.174 kb on - strand at 3768.185 kb on + strand at 3768.185 kb on + strand at 3768.215 kb on + strand at 3768.223 kb on - strand at 3768.223 kb on - strand at 3768.239 kb on - strand, within CCNA_03614 at 3768.250 kb on + strand, within CCNA_03614 at 3768.250 kb on + strand, within CCNA_03614 at 3768.258 kb on - strand, within CCNA_03614 at 3768.268 kb on + strand, within CCNA_03614 at 3768.319 kb on + strand, within CCNA_03614 at 3768.320 kb on + strand, within CCNA_03614 at 3768.321 kb on + strand, within CCNA_03614 at 3768.321 kb on + strand, within CCNA_03614 at 3768.322 kb on - strand, within CCNA_03614 at 3768.322 kb on - strand, within CCNA_03614 at 3768.327 kb on + strand, within CCNA_03614 at 3768.327 kb on - strand, within CCNA_03614 at 3768.334 kb on + strand, within CCNA_03614 at 3768.351 kb on + strand, within CCNA_03614 at 3768.369 kb on - strand, within CCNA_03614 at 3768.388 kb on - strand, within CCNA_03614 at 3768.412 kb on + strand, within CCNA_03614 at 3768.433 kb on - strand, within CCNA_03614 at 3768.452 kb on + strand, within CCNA_03614 at 3768.452 kb on + strand, within CCNA_03614 at 3768.460 kb on - strand, within CCNA_03614 at 3768.554 kb on - strand, within CCNA_03614 at 3768.562 kb on + strand, within CCNA_03614 at 3768.593 kb on + strand at 3768.605 kb on + strand at 3768.605 kb on + strand at 3768.674 kb on - strand at 3768.704 kb on - strand at 3768.707 kb on + strand at 3768.747 kb on + strand at 3768.747 kb on + strand at 3768.813 kb on + strand at 3768.868 kb on - strand at 3768.920 kb on - strand at 3768.940 kb on - strand, within CCNA_03615 at 3768.999 kb on - strand, within CCNA_03615 at 3768.999 kb on - strand, within CCNA_03615 at 3769.004 kb on - strand, within CCNA_03615 at 3769.009 kb on - strand, within CCNA_03615 at 3769.049 kb on + strand, within CCNA_03615 at 3769.083 kb on + strand, within CCNA_03615 at 3769.083 kb on + strand, within CCNA_03615 at 3769.098 kb on + strand, within CCNA_03615 at 3769.103 kb on + strand, within CCNA_03615 at 3769.117 kb on + strand, within CCNA_03615 at 3769.188 kb on - strand, within CCNA_03615 at 3769.206 kb on + strand, within CCNA_03615 at 3769.206 kb on + strand, within CCNA_03615 at 3769.208 kb on + strand, within CCNA_03615 at 3769.220 kb on + strand, within CCNA_03615 at 3769.238 kb on - strand, within CCNA_03615 at 3769.268 kb on + strand, within CCNA_03615 at 3769.280 kb on - strand, within CCNA_03615 at 3769.357 kb on + strand, within CCNA_03615 at 3769.371 kb on + strand, within CCNA_03615 at 3769.376 kb on + strand, within CCNA_03615 at 3769.379 kb on - strand, within CCNA_03615 at 3769.387 kb on + strand, within CCNA_03615 at 3769.403 kb on + strand, within CCNA_03615 at 3769.461 kb on - strand, within CCNA_03615 at 3769.464 kb on + strand, within CCNA_03615 at 3769.515 kb on + strand, within CCNA_03615 at 3769.528 kb on - strand, within CCNA_03615 at 3769.528 kb on - strand, within CCNA_03615 at 3769.528 kb on - strand, within CCNA_03615 at 3769.528 kb on - strand, within CCNA_03615 at 3769.606 kb on + strand, within CCNA_03615
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,767,195 - CCNA_03612 0.67 +0.7 3,767,225 - CCNA_03612 0.79 -0.1 3,767,236 + CCNA_03612 0.84 +0.2 3,767,244 - CCNA_03612 0.87 +0.5 3,767,244 - CCNA_03612 0.87 -0.4 3,767,244 - CCNA_03612 0.87 +0.1 3,767,276 + -0.4 3,767,398 + +0.2 3,767,420 - -0.7 3,767,434 + -0.2 3,767,439 + -0.4 3,767,439 + +0.6 3,767,463 - -1.0 3,767,526 + +1.0 3,767,526 + +0.0 3,767,528 + +0.0 3,767,534 - -0.0 3,767,542 + +0.5 3,767,550 - -1.9 3,767,560 + -0.7 3,767,589 + -1.3 3,767,607 - -2.1 3,767,618 + -0.2 3,767,618 + -0.9 3,767,621 - -1.2 3,767,626 - -0.2 3,767,699 + -0.4 3,767,715 - +0.3 3,767,720 + -1.2 3,767,742 - CCNA_03613 0.15 -0.1 3,767,758 + CCNA_03613 0.18 -0.2 3,767,758 + CCNA_03613 0.18 -0.4 3,767,797 + CCNA_03613 0.27 +0.8 3,767,798 + CCNA_03613 0.27 +0.1 3,767,806 - CCNA_03613 0.29 -0.4 3,767,807 + CCNA_03613 0.29 +0.2 3,767,817 + CCNA_03613 0.31 +0.2 3,767,825 - CCNA_03613 0.33 -1.1 3,767,860 + CCNA_03613 0.41 -0.6 3,767,875 - CCNA_03613 0.44 +0.2 3,767,881 + CCNA_03613 0.45 +0.0 3,767,897 + CCNA_03613 0.49 -0.4 3,767,900 - CCNA_03613 0.49 -0.0 3,767,940 - CCNA_03613 0.58 -0.8 3,767,940 - CCNA_03613 0.58 +0.7 3,767,950 - CCNA_03613 0.60 -0.3 3,767,951 - CCNA_03613 0.61 +0.5 3,767,961 - CCNA_03613 0.63 +0.3 3,768,033 + CCNA_03613 0.79 -0.3 3,768,033 + CCNA_03613 0.79 +1.0 3,768,033 + CCNA_03613 0.79 +0.1 3,768,041 - CCNA_03613 0.81 -0.4 3,768,041 - CCNA_03613 0.81 -0.8 3,768,041 - CCNA_03613 0.81 -0.2 3,768,041 - CCNA_03613 0.81 +1.0 3,768,041 - CCNA_03613 0.81 -0.4 3,768,048 + CCNA_03613 0.82 -0.1 3,768,071 + CCNA_03613 0.87 +0.0 3,768,082 - CCNA_03613 0.90 -1.3 3,768,096 - -0.5 3,768,115 + +0.2 3,768,166 + -0.2 3,768,166 + +0.1 3,768,166 + +0.6 3,768,168 - +0.1 3,768,174 - -0.4 3,768,185 + -0.0 3,768,185 + -0.1 3,768,215 + +0.7 3,768,223 - -0.2 3,768,223 - -0.8 3,768,239 - CCNA_03614 0.12 +0.1 3,768,250 + CCNA_03614 0.14 -0.0 3,768,250 + CCNA_03614 0.14 +0.1 3,768,258 - CCNA_03614 0.16 -0.5 3,768,268 + CCNA_03614 0.19 +0.3 3,768,319 + CCNA_03614 0.31 +0.2 3,768,320 + CCNA_03614 0.31 +0.5 3,768,321 + CCNA_03614 0.31 -0.2 3,768,321 + CCNA_03614 0.31 -0.0 3,768,322 - CCNA_03614 0.31 +0.2 3,768,322 - CCNA_03614 0.31 +0.1 3,768,327 + CCNA_03614 0.32 -0.3 3,768,327 - CCNA_03614 0.32 -0.9 3,768,334 + CCNA_03614 0.34 -0.0 3,768,351 + CCNA_03614 0.38 -0.1 3,768,369 - CCNA_03614 0.42 +0.9 3,768,388 - CCNA_03614 0.47 -0.4 3,768,412 + CCNA_03614 0.52 -0.5 3,768,433 - CCNA_03614 0.57 +0.1 3,768,452 + CCNA_03614 0.62 +0.0 3,768,452 + CCNA_03614 0.62 +0.4 3,768,460 - CCNA_03614 0.63 +0.0 3,768,554 - CCNA_03614 0.85 -0.5 3,768,562 + CCNA_03614 0.87 +0.2 3,768,593 + -0.0 3,768,605 + +0.2 3,768,605 + -0.4 3,768,674 - -0.5 3,768,704 - -0.0 3,768,707 + +0.0 3,768,747 + -0.0 3,768,747 + -0.2 3,768,813 + +0.0 3,768,868 - +0.7 3,768,920 - -0.0 3,768,940 - CCNA_03615 0.11 -0.7 3,768,999 - CCNA_03615 0.14 +0.2 3,768,999 - CCNA_03615 0.14 -0.1 3,769,004 - CCNA_03615 0.14 -0.2 3,769,009 - CCNA_03615 0.14 +0.2 3,769,049 + CCNA_03615 0.16 -0.2 3,769,083 + CCNA_03615 0.18 +0.1 3,769,083 + CCNA_03615 0.18 +0.0 3,769,098 + CCNA_03615 0.18 -0.2 3,769,103 + CCNA_03615 0.19 -0.0 3,769,117 + CCNA_03615 0.19 -0.2 3,769,188 - CCNA_03615 0.23 +1.2 3,769,206 + CCNA_03615 0.24 +0.0 3,769,206 + CCNA_03615 0.24 -0.1 3,769,208 + CCNA_03615 0.24 +0.3 3,769,220 + CCNA_03615 0.24 +0.2 3,769,238 - CCNA_03615 0.25 +0.0 3,769,268 + CCNA_03615 0.27 -0.1 3,769,280 - CCNA_03615 0.27 +0.2 3,769,357 + CCNA_03615 0.31 -0.9 3,769,371 + CCNA_03615 0.32 +0.2 3,769,376 + CCNA_03615 0.32 +0.4 3,769,379 - CCNA_03615 0.32 +0.1 3,769,387 + CCNA_03615 0.33 +0.2 3,769,403 + CCNA_03615 0.33 +0.2 3,769,461 - CCNA_03615 0.36 +0.5 3,769,464 + CCNA_03615 0.36 +1.4 3,769,515 + CCNA_03615 0.39 -0.2 3,769,528 - CCNA_03615 0.39 +1.4 3,769,528 - CCNA_03615 0.39 -0.1 3,769,528 - CCNA_03615 0.39 +0.3 3,769,528 - CCNA_03615 0.39 -0.5 3,769,606 + CCNA_03615 0.43 -0.0
Or see this region's nucleotide sequence