Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03555 and CCNA_03556 are separated by 9 nucleotides CCNA_03556 and CCNA_03557 are separated by 109 nucleotides CCNA_03557 and CCNA_03558 are separated by 207 nucleotides CCNA_03558 and CCNA_03559 overlap by 1 nucleotides CCNA_03559 and CCNA_03560 overlap by 1 nucleotides
CCNA_03555: CCNA_03555 - esterase lipase family protein, at 3,711,896 to 3,712,645
_03555
CCNA_03556: CCNA_03556 - multidrug efflux system protein, at 3,712,655 to 3,712,975
_03556
CCNA_03557: CCNA_03557 - hypothetical protein, at 3,713,085 to 3,713,810
_03557
CCNA_03558: CCNA_03558 - ATP synthase epsilon chain, at 3,714,018 to 3,714,278
_03558
CCNA_03559: CCNA_03559 - hypothetical protein, at 3,714,278 to 3,714,529
_03559
CCNA_03560: CCNA_03560 - ATP synthase beta chain, at 3,714,529 to 3,716,148
_03560
Position (kb)
3713
3714 Strain fitness (log2 ratio)
-1
0
1 at 3712.141 kb on + strand, within CCNA_03555 at 3712.218 kb on + strand, within CCNA_03555 at 3712.218 kb on + strand, within CCNA_03555 at 3712.222 kb on + strand, within CCNA_03555 at 3712.284 kb on - strand, within CCNA_03555 at 3712.288 kb on + strand, within CCNA_03555 at 3712.291 kb on + strand, within CCNA_03555 at 3712.298 kb on + strand, within CCNA_03555 at 3712.314 kb on - strand, within CCNA_03555 at 3712.457 kb on - strand, within CCNA_03555 at 3712.457 kb on - strand, within CCNA_03555 at 3712.534 kb on + strand, within CCNA_03555 at 3712.535 kb on + strand, within CCNA_03555 at 3712.584 kb on + strand at 3712.622 kb on + strand at 3712.652 kb on + strand at 3712.665 kb on - strand at 3712.702 kb on + strand, within CCNA_03556 at 3712.705 kb on - strand, within CCNA_03556 at 3712.788 kb on + strand, within CCNA_03556 at 3712.791 kb on - strand, within CCNA_03556 at 3712.795 kb on + strand, within CCNA_03556 at 3712.913 kb on + strand, within CCNA_03556 at 3712.913 kb on + strand, within CCNA_03556 at 3712.920 kb on - strand, within CCNA_03556 at 3712.921 kb on - strand, within CCNA_03556 at 3713.083 kb on - strand at 3713.103 kb on + strand at 3713.174 kb on - strand, within CCNA_03557 at 3713.201 kb on - strand, within CCNA_03557 at 3713.252 kb on - strand, within CCNA_03557 at 3713.316 kb on - strand, within CCNA_03557 at 3713.316 kb on - strand, within CCNA_03557 at 3713.326 kb on - strand, within CCNA_03557 at 3713.330 kb on + strand, within CCNA_03557 at 3713.338 kb on - strand, within CCNA_03557 at 3713.338 kb on - strand, within CCNA_03557 at 3713.381 kb on + strand, within CCNA_03557 at 3713.418 kb on - strand, within CCNA_03557 at 3713.524 kb on - strand, within CCNA_03557 at 3713.547 kb on - strand, within CCNA_03557 at 3713.547 kb on - strand, within CCNA_03557 at 3713.547 kb on - strand, within CCNA_03557 at 3713.578 kb on + strand, within CCNA_03557 at 3713.701 kb on + strand, within CCNA_03557 at 3713.706 kb on + strand, within CCNA_03557 at 3713.869 kb on - strand at 3713.881 kb on + strand at 3713.991 kb on - strand at 3713.991 kb on - strand at 3714.016 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,712,141 + CCNA_03555 0.33 +0.5 3,712,218 + CCNA_03555 0.43 +1.3 3,712,218 + CCNA_03555 0.43 -0.4 3,712,222 + CCNA_03555 0.43 -0.2 3,712,284 - CCNA_03555 0.52 +0.2 3,712,288 + CCNA_03555 0.52 +0.1 3,712,291 + CCNA_03555 0.53 -0.3 3,712,298 + CCNA_03555 0.54 +0.3 3,712,314 - CCNA_03555 0.56 +0.3 3,712,457 - CCNA_03555 0.75 -0.5 3,712,457 - CCNA_03555 0.75 +0.3 3,712,534 + CCNA_03555 0.85 -0.0 3,712,535 + CCNA_03555 0.85 -0.3 3,712,584 + -0.0 3,712,622 + +1.0 3,712,652 + +0.3 3,712,665 - +0.0 3,712,702 + CCNA_03556 0.15 +1.1 3,712,705 - CCNA_03556 0.16 +0.0 3,712,788 + CCNA_03556 0.41 +0.3 3,712,791 - CCNA_03556 0.42 -0.2 3,712,795 + CCNA_03556 0.44 -0.2 3,712,913 + CCNA_03556 0.80 -0.0 3,712,913 + CCNA_03556 0.80 +0.4 3,712,920 - CCNA_03556 0.83 +0.2 3,712,921 - CCNA_03556 0.83 +0.9 3,713,083 - +0.3 3,713,103 + -0.3 3,713,174 - CCNA_03557 0.12 +0.3 3,713,201 - CCNA_03557 0.16 +0.5 3,713,252 - CCNA_03557 0.23 +0.2 3,713,316 - CCNA_03557 0.32 +0.6 3,713,316 - CCNA_03557 0.32 +0.5 3,713,326 - CCNA_03557 0.33 +0.0 3,713,330 + CCNA_03557 0.34 -0.2 3,713,338 - CCNA_03557 0.35 +0.3 3,713,338 - CCNA_03557 0.35 -0.6 3,713,381 + CCNA_03557 0.41 -1.5 3,713,418 - CCNA_03557 0.46 +0.1 3,713,524 - CCNA_03557 0.60 +1.6 3,713,547 - CCNA_03557 0.64 +0.1 3,713,547 - CCNA_03557 0.64 +0.5 3,713,547 - CCNA_03557 0.64 +0.0 3,713,578 + CCNA_03557 0.68 -0.5 3,713,701 + CCNA_03557 0.85 -1.5 3,713,706 + CCNA_03557 0.86 +0.2 3,713,869 - +0.2 3,713,881 + +0.1 3,713,991 - +0.4 3,713,991 - -0.3 3,714,016 + -0.3
Or see this region's nucleotide sequence